Prupe.2G289700_v2.0.a1

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011453
Physical Location & Seq
Forward (+)
28407319 .. 28410008
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G289700.3

Sequence Viewer

Length: 1170 bp
ATGGAGACCATTCGATCAACCTTCCCAATTTTCCAAACCAACCCAGTTTTCCTCACTCCCAAGCCTCTAAAACCCTTCAAGGTTTCCATCAAACCTCCACCACCAGACTTCAATTTCAGGTCAGAAATTTCAGACCACTCAAAAGCCACAATAGCCAAAACTCACCCTGAGTTGCTTGATTTGGCTGAAAATGGGACCTTGTTCTTCATCGACAAGAGCCGGTTTGGTCCAGTTCCGGCCTGGAGGACCGAGTTCGTCGAACCGGAGGCCATCTGGTTAGTTGGCACCACTCATATTTCTCAAGACTCTGCTCTGGAGGTTGAGCGCGTAGTCCGGGCAGTGAAGCCAGACAATGTGGTGGTTGAGCTCTGCAGAAGCAGGCAACCCAATTTCAGAGCTGGGATTATGTATGCTAATGCCTCCATGGATGGTGAGGCAGGCCAACAATTAAGGTCAAATATGTTCTCTTTGACTGGAACTGGGTTTTTTGGCGCCGTTGGTCGGAGCATAAACTTAGGGGGTCAAACTGCTCTGGCATTACGAGTACTTTTGGCGGTTTTCTCATCAAAGATCTCGTCAGATACCAATCGTCCGTTTGGTGATGAGTTCCGTGCTGCTCGAAAGGTCTCTGAAGAAGTTGGTGCTCAAATAGTTCTGGGGGACCGGCCGATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGAATTGGACAGAGAAACTGAGCTTGGTGGCCTCAGTTGTTCGTGGGATAACCTCACCATCTGATATGTCCCAAAAGAATCTCAAGGAATCAAGTGCAAGTGATGATGGCACATTTCAGCTTTATGAGCAGCTAAGTTCTTCATATCCTTCACTCCTCCAGCCTCTGATACATGAACGAGACACTTACCTTGCATGGTCTCTAAAGAGGAGCAAAGCTGTGAATAAGAGTAAGAGAGTGGTGGGGGTTATTGGAAAGGGACACATGAATGGTGTAATATATGCATTGCTAGCTGATCTGGGAGATCTGCGGTTTAGGGACCTTGTAGGACAGAGGCCTTCAAGTCAAGGTACCGACGCTAGTTCTAATGGCAAATGGGTTGTCAAATTGGTCCAGGACTTGGTCAGAGACACTGTCATTGGCACCCTCCTGTGGGCATTATATGAGCAGATAAAAGGTGGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

390

Amino Acids

42.97

Weight (kDa)

9.16

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1052
AccB1I GGYRCC 4 cut(s) 284, 491, 1052, 1124
AccB7I CCANNNNNTGG 1 cut(s) 1102
AccII CGCG 1 cut(s) 327
AciI CCGC 2 cut(s) 554, 1012
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 2 cut(s) 126, 697
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 2 cut(s) 546, 1054
AfiI CCNNNNNNNGG 4 cut(s) 501, 1102, 1134, 1135
AgsI TTSAA 5 cut(s) 79, 112, 674, 686, 1044
AjnI CCWGG 2 cut(s) 239, 1095
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 710, 742
AluBI AGCT 7 cut(s) 367, 398, 726, 823, 835, 920, 995
AluI AGCT 7 cut(s) 367, 398, 726, 823, 835, 920, 995
Alw21I GWGCWC 2 cut(s) 369, 646
Alw26I GTCTC 4 cut(s) 631, 876, 906, 1104
AlwNI CAGNNNCTG 1 cut(s) 868
AoxI GGCC 6 cut(s) 237, 267, 439, 665, 732, 1037
ApeKI GCWGC 2 cut(s) 614, 832
ApoI RAATTY 2 cut(s) 126, 697
ArsI GACNNNNNNTTYG 4 cut(s) 560, 592, 1068, 1100
Asp718I GGTACC 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 327, 494
AspS9I GGNCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 4 cut(s) 155, 443, 611, 750
AsuNHI GCTAGC 1 cut(s) 991
AvaII GGWCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
BanI GGYRCC 4 cut(s) 284, 491, 1052, 1124
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 369, 646
BbvI GCAGC 2 cut(s) 601, 844
BccI CCATC 5 cut(s) 95, 278, 422, 769, 803
BceAI ACGGC 1 cut(s) 479
BciT130I CCWGG 2 cut(s) 241, 1097
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 4 cut(s) 631, 876, 906, 1104
BfaI CTAG 2 cut(s) 992, 1062
BfmI CTRYAG 2 cut(s) 370, 1166
BfoI RGCGCY 1 cut(s) 495
BglII AGATCT 2 cut(s) 570, 1006
BisI GCNGC 2 cut(s) 615, 833
BlsI GCNGC 2 cut(s) 616, 834
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 3 cut(s) 241, 335, 1097
Bme18I GGWCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
BmgT120I GGNCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
BmiI GGNNCC 7 cut(s) 196, 286, 493, 662, 1022, 1054, 1126
BmrFI CCNGG 3 cut(s) 241, 335, 1097
BmrI ACTGGG 2 cut(s) 38, 489
BmtI GCTAGC 1 cut(s) 995
BmuI ACTGGG 2 cut(s) 38, 489
BpmI CTGGAG 3 cut(s) 262, 335, 845
BpuEI CTTGAG 2 cut(s) 285, 770
BpuMI CCSGG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 585
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 2 cut(s) 631, 906
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 501, 1102, 1134, 1135
Bse118I RCCGGY 2 cut(s) 219, 663
Bse1I ACTGG 4 cut(s) 44, 230, 478, 484
Bse3DI GCAATG 1 cut(s) 986
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 2 cut(s) 241, 1097
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 4 cut(s) 501, 1102, 1134, 1135
BseMI GCAATG 1 cut(s) 986
BseMII CTCAG 3 cut(s) 159, 713, 750
BseNI ACTGG 4 cut(s) 44, 230, 478, 484
BseRI GAGGAG 2 cut(s) 848, 925
BseX3I CGGCCG 1 cut(s) 665
BseXI GCAGC 2 cut(s) 601, 844
BseYI CCCAGC 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 668
BshFI GGCC 6 cut(s) 239, 269, 441, 667, 734, 1039
BshNI GGYRCC 4 cut(s) 284, 491, 1052, 1124
BsiEI CGRYCG 1 cut(s) 668
BsiHKAI GWGCWC 2 cut(s) 369, 646
BsiSI CCGG 5 cut(s) 220, 236, 263, 334, 664
BslFI GGGAC 5 cut(s) 208, 674, 757, 975, 1034
BslI CCNNNNNNNGG 4 cut(s) 501, 1102, 1134, 1135
BsmAI GTCTC 4 cut(s) 631, 876, 906, 1104
BsmFI GGGAC 5 cut(s) 208, 674, 757, 975, 1034
BsnI GGCC 6 cut(s) 239, 269, 441, 667, 734, 1039
Bso31I GGTCTC 2 cut(s) 631, 906
Bsp1286I GDGCHC 2 cut(s) 369, 646
Bsp143I GATC 4 cut(s) 14, 570, 997, 1006
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 2 cut(s) 554, 1012
BspANI GGCC 6 cut(s) 239, 269, 441, 667, 734, 1039
BspCNI CTCAG 3 cut(s) 160, 714, 749
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 7 cut(s) 196, 286, 493, 662, 1022, 1054, 1126
BspMAI CTGCAG 1 cut(s) 374
BspOI GCTAGC 1 cut(s) 995
BspT107I GGYRCC 4 cut(s) 284, 491, 1052, 1124
BspTNI GGTCTC 2 cut(s) 631, 906
BsrDI GCAATG 1 cut(s) 986
BsrFI RCCGGY 2 cut(s) 219, 663
BsrI ACTGG 4 cut(s) 44, 230, 478, 484
BssAI RCCGGY 2 cut(s) 219, 663
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 4 cut(s) 14, 570, 997, 1006
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 241, 1097
Bst4CI ACNGT 1 cut(s) 1117
BstACI GRCGYC 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 380, 439, 993
BstDEI CTNAG 5 cut(s) 168, 514, 722, 736, 836
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 495
BstHHI GCGC 2 cut(s) 327, 494
BstKTI GATC 4 cut(s) 17, 573, 1000, 1009
BstMAI GTCTC 4 cut(s) 631, 876, 906, 1104
BstMBI GATC 4 cut(s) 14, 570, 997, 1006
BstMCI CGRYCG 1 cut(s) 668
BstMWI GCNNNNNNNGC 3 cut(s) 152, 829, 992
BstNI CCWGG 2 cut(s) 241, 1097
BstSCI CCNGG 3 cut(s) 239, 333, 1095
BstSFI CTRYAG 2 cut(s) 370, 1166
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 601, 844
BstX2I RGATCY 2 cut(s) 570, 1006
BstYI RGATCY 2 cut(s) 570, 1006
BstZI CGGCCG 1 cut(s) 665
BsuRI GGCC 6 cut(s) 239, 269, 441, 667, 734, 1039
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 345, 1113
Cac8I GCNNGC 3 cut(s) 380, 439, 993
CaiI CAGNNNCTG 1 cut(s) 868
CfoI GCGC 2 cut(s) 327, 494
Cfr10I RCCGGY 2 cut(s) 219, 663
Cfr13I GGNCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 2 cut(s) 545, 1053
CviAII CATG 4 cut(s) 424, 875, 897, 967
CviQI GTAC 2 cut(s) 545, 1053
DdeI CTNAG 5 cut(s) 168, 514, 722, 736, 836
DinI GGCGCC 1 cut(s) 493
DpnI GATC 4 cut(s) 16, 572, 999, 1008
DpnII GATC 4 cut(s) 14, 570, 997, 1006
EaeI YGGCCR 1 cut(s) 665
EagI CGGCCG 1 cut(s) 665
Ecl136II GAGCTC 1 cut(s) 367
EclXI CGGCCG 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 423
Eco147I AGGCCT 1 cut(s) 1039
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 2 cut(s) 631, 906
Eco47I GGWCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
Eco52I CGGCCG 1 cut(s) 665
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 367
EcoO109I RGGNCCY 2 cut(s) 195, 1021
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 239, 1095
EcoT14I CCWWGG 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 369
EgeI GGCGCC 1 cut(s) 493
EheI GGCGCC 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 4 cut(s) 427, 878, 900, 970
FaqI GGGAC 5 cut(s) 208, 674, 757, 975, 1034
FatI CATG 4 cut(s) 423, 874, 896, 966
Fnu4HI GCNGC 2 cut(s) 615, 833
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 615, 833
FspBI CTAG 2 cut(s) 992, 1062
GlaI GCGC 2 cut(s) 326, 493
GluI GCNGC 2 cut(s) 615, 833
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 3 cut(s) 262, 335, 845
HaeII RGCGCY 1 cut(s) 495
HaeIII GGCC 6 cut(s) 239, 269, 441, 667, 734, 1039
HapII CCGG 5 cut(s) 220, 236, 263, 334, 664
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 2 cut(s) 327, 494
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 427, 878, 900, 970
Hin6I GCGC 2 cut(s) 325, 492
HinP1I GCGC 2 cut(s) 325, 492
HinfI GANTC 3 cut(s) 305, 781, 791
HpaII CCGG 5 cut(s) 220, 236, 263, 334, 664
HphI GGTGA 4 cut(s) 155, 443, 611, 750
Hpy188III TCNNGA 3 cut(s) 302, 314, 683
Hpy99I CGWCG 2 cut(s) 260, 1061
HpyAV CCTTC 4 cut(s) 31, 85, 861, 1050
HpyCH4III ACNGT 1 cut(s) 1117
HpyCH4V TGCA 4 cut(s) 372, 800, 896, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 829, 992
HpyF3I CTNAG 5 cut(s) 168, 514, 722, 736, 836
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 427, 878, 900, 970
HspAI GCGC 2 cut(s) 325, 492
KasI GGCGCC 1 cut(s) 491
KpnI GGTACC 1 cut(s) 1056
Kzo9I GATC 4 cut(s) 14, 570, 997, 1006
LmnI GCTCC 2 cut(s) 504, 912
Lsp1109I GCAGC 2 cut(s) 601, 844
MaeI CTAG 2 cut(s) 992, 1062
MalI GATC 4 cut(s) 16, 572, 999, 1008
MboI GATC 4 cut(s) 14, 570, 997, 1006
MboII GAAGA 3 cut(s) 196, 644, 834
MflI RGATCY 2 cut(s) 570, 1006
MhlI GDGCHC 2 cut(s) 369, 646
MluCI AATT 8 cut(s) 27, 112, 126, 388, 446, 697, 706, 1088
Mly113I GGCGCC 1 cut(s) 492
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 482
Mph1103I ATGCAT 1 cut(s) 988
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 1 cut(s) 969
MspI CCGG 5 cut(s) 220, 236, 263, 334, 664
MspR9I CCNGG 3 cut(s) 241, 335, 1097
MvaI CCWGG 2 cut(s) 241, 1097
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 152, 829, 992
NarI GGCGCC 1 cut(s) 492
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 423
NdeII GATC 4 cut(s) 14, 570, 997, 1006
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 4 cut(s) 427, 878, 900, 970
NlaIV GGNNCC 7 cut(s) 196, 286, 493, 662, 1022, 1054, 1126
NsiI ATGCAT 1 cut(s) 988
PceI AGGCCT 1 cut(s) 1039
PfeI GAWTC 2 cut(s) 781, 791
PflFI GACNNNGTC 2 cut(s) 1103, 1115
PflMI CCANNNNNTGG 1 cut(s) 1102
PfoI TCCNGGA 1 cut(s) 1095
PkrI GCNGC 2 cut(s) 616, 834
PleI GAGTC 1 cut(s) 299
PluTI GGCGCC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 299
PpuMI RGGWCCY 2 cut(s) 195, 1021
Psp124BI GAGCTC 1 cut(s) 369
Psp5II RGGWCCY 2 cut(s) 195, 1021
Psp6I CCWGG 2 cut(s) 239, 1095
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 239, 1095
PspN4I GGNNCC 7 cut(s) 196, 286, 493, 662, 1022, 1054, 1126
PspPI GGNCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
PspPPI RGGWCCY 2 cut(s) 195, 1021
PstI CTGCAG 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 868
PsuI RGATCY 2 cut(s) 570, 1006
PsyI GACNNNGTC 2 cut(s) 1103, 1115
RsaI GTAC 2 cut(s) 546, 1054
RsaNI GTAC 2 cut(s) 545, 1053
RseI CAYNNNNRTG 1 cut(s) 969
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 2 cut(s) 615, 833
Sau3AI GATC 4 cut(s) 14, 570, 997, 1006
Sau96I GGNCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 241, 335, 1097
SduI GDGCHC 2 cut(s) 369, 646
SfcI CTRYAG 2 cut(s) 370, 1166
SfoI GGCGCC 1 cut(s) 493
SinI GGWCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 2 cut(s) 300, 785
SmoI CTYRAG 2 cut(s) 300, 785
Sse9I AATT 8 cut(s) 27, 112, 126, 388, 446, 697, 706, 1088
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 2 cut(s) 554, 1012
SspDI GGCGCC 1 cut(s) 491
SspMI CTAG 2 cut(s) 992, 1062
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 3 cut(s) 239, 333, 1095
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 1117
TaqI TCGA 4 cut(s) 13, 210, 258, 619
TaqII GACCGA 1 cut(s) 263
TasI AATT 8 cut(s) 27, 112, 126, 388, 446, 697, 706, 1088
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 2 cut(s) 781, 791
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 2 cut(s) 345, 1120
TseI GCWGC 2 cut(s) 614, 832
TspDTI ATGAA 4 cut(s) 196, 834, 891, 983
TspGWI ACGGA 2 cut(s) 582, 599
TspRI CASTG 2 cut(s) 345, 1120
Tth111I GACNNNGTC 2 cut(s) 1103, 1115
Van91I CCANNNNNTGG 1 cut(s) 1102
VpaK11BI GGWCC 6 cut(s) 195, 227, 246, 661, 1021, 1093
XapI RAATTY 2 cut(s) 126, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XspI CTAG 2 cut(s) 992, 1062
ZrmI AGTACT 1 cut(s) 546
Zsp2I ATGCAT 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.