Rh1BG373600

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011453
Physical Location & Seq
Forward (+)
50474753 .. 50476293
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG373600.1

Sequence Viewer

Length: 708 bp
ATGTTCTCTTTGAGTGGAAATGGATTCTTTGGAGCCGTTGGTCGTAGCATAAACTTGGGGGGTCAAACTGCTCTGGCATTACGCGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCATCAGATACCAACCGTCCTTTCGGTGATGAGTTCCGCGCTGCTCGTAAAGCCTCTGAAGAAGTTGGTGCTCAAATTGTTTTGGGGGATCGCCCAATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGACATGGACAGAGAAACTGAGCTTAGTGACGTCGGTTTTTCGTGGGATAACATCACCATCTGATATGTCCCAAAAGAGTCTCAAGGATTCAAGTACAAGTGACAGCACATTTCAGCTGTATAAGCAACTAAGTTCTTCATATCCCTCACTCCTGCAACCTCTTATACATGAACGAGACACCTACCTAGCATGGTCTTTAAAGAGAAGCAAAGCTGTTAATAAGAGTAAGAGAGTGGTGGGGGTTATCGGAAAAGGCCACATGAATGGTGTAATCTATGCACTATTAGCTGACTCGGGAGACCTACGGTTTCGAGACCTTGTAGGAGGACAGAGGCCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAGGTTGCTCAAGGACTTGGTTAGAGATACTATCATTGGCATTGTCTTGTGGGCATTATATGAGCAGATCAAAGATGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

235

Amino Acids

25.8

Weight (kDa)

9.69

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 41 - 172 4.9e-12 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
AccII CGCG 2 cut(s) 84, 153
AciI CCGC 2 cut(s) 95, 151
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 2 cut(s) 87, 340
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 4 cut(s) 108, 215, 227, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 267, 361, 458, 533
AluI AGCT 4 cut(s) 267, 361, 458, 533
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 4 cut(s) 329, 414, 537, 552
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 2 cut(s) 499, 578
ApeKI GCWGC 2 cut(s) 155, 602
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 152, 291
AvaI CYCGRG 1 cut(s) 538
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 142, 589
BccI CCATC 2 cut(s) 310, 692
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 4 cut(s) 329, 414, 537, 552
BfaI CTAG 1 cut(s) 431
BglII AGATCT 1 cut(s) 111
BisI GCNGC 2 cut(s) 156, 603
BlsI GCNGC 2 cut(s) 157, 604
BmeT110I CYCGRG 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 589
BpuEI CTTGAG 2 cut(s) 311, 617
BsaHI GRCGYC 1 cut(s) 275
BsaI GGTCTC 2 cut(s) 537, 552
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 142, 589
BseYI CCCAGC 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 84, 153
BshFI GGCC 2 cut(s) 501, 580
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 538
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 4 cut(s) 329, 414, 537, 552
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 2 cut(s) 501, 580
Bso31I GGTCTC 2 cut(s) 537, 552
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 111, 202, 690
BspACI CCGC 2 cut(s) 95, 151
BspANI GGCC 2 cut(s) 501, 580
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 2 cut(s) 84, 153
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 537, 552
BssMI GATC 3 cut(s) 111, 202, 690
BssNI GRCGYC 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 131, 552
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 263, 268, 374
BstFNI CGCG 2 cut(s) 84, 153
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 3 cut(s) 114, 205, 693
BstMAI GTCTC 4 cut(s) 329, 414, 537, 552
BstMBI GATC 3 cut(s) 111, 202, 690
BstMWI GCNNNNNNNGC 3 cut(s) 164, 367, 530
BstUI CGCG 2 cut(s) 84, 153
BstV1I GCAGC 2 cut(s) 142, 589
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 2 cut(s) 501, 580
CfoI GCGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 86, 339
CviAII CATG 5 cut(s) 249, 413, 435, 505, 585
CviQI GTAC 2 cut(s) 86, 339
DdeI CTNAG 3 cut(s) 263, 268, 374
DpnI GATC 3 cut(s) 113, 204, 692
DpnII GATC 3 cut(s) 111, 202, 690
DraI TTTAAA 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 580
Eco31I GGTCTC 2 cut(s) 537, 552
Eco57I CTGAAG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 238
FaeI CATG 5 cut(s) 252, 416, 438, 508, 588
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 248, 412, 434, 504, 584
Fnu4HI GCNGC 2 cut(s) 156, 603
Fsp4HI GCNGC 2 cut(s) 156, 603
FspBI CTAG 1 cut(s) 431
GlaI GCGC 1 cut(s) 154
GluI GCNGC 2 cut(s) 156, 603
GsaI CCCAGC 1 cut(s) 619
HaeIII GGCC 2 cut(s) 501, 580
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 5 cut(s) 252, 416, 438, 508, 588
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 4 cut(s) 24, 322, 332, 536
HphI GGTGA 2 cut(s) 152, 291
Hpy188I TCNGA 5 cut(s) 121, 172, 246, 307, 494
Hpy188III TCNNGA 3 cut(s) 224, 540, 557
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 591
HpyCH4III ACNGT 2 cut(s) 131, 552
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 400, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 367, 530
HpyF3I CTNAG 3 cut(s) 263, 268, 374
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 5 cut(s) 252, 416, 438, 508, 588
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 3 cut(s) 111, 202, 690
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 4 cut(s) 59, 410, 601, 610
Lsp1109I GCAGC 2 cut(s) 142, 589
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 271, 344
MalI GATC 3 cut(s) 113, 204, 692
MboI GATC 3 cut(s) 111, 202, 690
MboII GAAGA 3 cut(s) 96, 185, 372
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 3 cut(s) 189, 210, 238
MluI ACGCGT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 331, 530
MnlI CCTC 5 cut(s) 178, 400, 414, 563, 570
MseI TTAA 2 cut(s) 443, 462
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 361
MunI CAATTG 1 cut(s) 210
MvnI CGCG 2 cut(s) 84, 153
MwoI GCNNNNNNNGC 3 cut(s) 164, 367, 530
NdeII GATC 3 cut(s) 111, 202, 690
NlaIII CATG 5 cut(s) 252, 416, 438, 508, 588
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 271, 344
PceI AGGCCT 1 cut(s) 580
PfeI GAWTC 2 cut(s) 24, 332
PkrI GCNGC 2 cut(s) 157, 604
PleI GAGTC 2 cut(s) 330, 530
PpsI GAGTC 2 cut(s) 330, 530
PspFI CCCAGC 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 2 cut(s) 87, 340
RsaNI GTAC 2 cut(s) 86, 339
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 2 cut(s) 443, 462
SatI GCNGC 2 cut(s) 156, 603
Sau3AI GATC 3 cut(s) 111, 202, 690
SchI GAGTC 2 cut(s) 331, 530
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 326, 632
SmoI CTYRAG 2 cut(s) 326, 632
Sse9I AATT 3 cut(s) 189, 210, 238
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 2 cut(s) 95, 151
SspMI CTAG 1 cut(s) 431
StuI AGGCCT 1 cut(s) 580
TaaI ACNGT 2 cut(s) 131, 552
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 556
TasI AATT 3 cut(s) 189, 210, 238
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 2 cut(s) 24, 332
Tru1I TTAA 2 cut(s) 443, 462
Tru9I TTAA 2 cut(s) 443, 462
TseFI GTSAC 2 cut(s) 271, 344
TseI GCWGC 2 cut(s) 155, 602
Tsp45I GTSAC 2 cut(s) 271, 344
TspDTI ATGAA 4 cut(s) 372, 429, 521, 573
XapI RAATTY 1 cut(s) 238
XspI CTAG 1 cut(s) 431
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.