Rh1CG387500

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011453
Physical Location & Seq
Forward (+)
65718417 .. 65720005
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG387500.1

Sequence Viewer

Length: 756 bp
ATGTATGCTTCCATGGATGATGAGTCCGGTCAACAATTGAAGTCGAACATGTTCTCTTTGAGTGGAAATGGATTCTTTGGAGCCGTTGGTCGTAGCATAAACTTGGGGGGTCAAACTGCTCTGGCATTACGCGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCATCAGATACCAACCGTCCTTTCGGTGATGAGTTCCGCGCTGCTCGTAAAGCCTCTGAAGAAGTTGGTGCTCAAATTGTTTTGGGGGATCGCCCAATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGACATGGACAGAGAAACTGAGCTTAGTGACGTCGGTTTTTCGTGGGATAACATCACCATCTGATATGTCCCAAAAGAGTCTCAAGGATTCAAGTACAAGTGACAGCACATTTCAGCTGTATAAGCAACTAAGTTCTTCATATCCCTCACTCCTGCAACCTCTTATACATGAACGAGACACCTACCTAGCATGGTCTTTAAAGAGAAGCAAAGCTGTTAATAAGAGTAAGAGAGTGGTGGGGGTTATCGGAAAAGGCCACATGAATGGTGTAATCTATGCACTATTAGCTGACTCGGGAGACCTACGGTTTCGAGACCTTGTAGGAGGACAGAGGCCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAGGTTGCTCAAGGACTTGGTTAGAGATACTATCATTGGCATTGTCTTGTGGGCATTATATGAGCAGATCAAAGATGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

251

Amino Acids

27.59

Weight (kDa)

9.39

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 57 - 188 5.6e-12 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 326
AccII CGCG 2 cut(s) 132, 201
AciI CCGC 2 cut(s) 143, 199
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 2 cut(s) 135, 388
AflIII ACRYGT 2 cut(s) 48, 130
AgsI TTSAA 5 cut(s) 40, 156, 263, 275, 384
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 4 cut(s) 315, 409, 506, 581
AluI AGCT 4 cut(s) 315, 409, 506, 581
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 4 cut(s) 377, 462, 585, 600
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 2 cut(s) 547, 626
ApeKI GCWGC 2 cut(s) 203, 650
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 200, 339
AvaI CYCGRG 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 190, 637
BccI CCATC 2 cut(s) 358, 740
BceAI ACGGC 1 cut(s) 68
BcoDI GTCTC 4 cut(s) 377, 462, 585, 600
BfaI CTAG 1 cut(s) 479
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 204, 651
BlsI GCNGC 2 cut(s) 205, 652
BmeT110I CYCGRG 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 637
BpuEI CTTGAG 2 cut(s) 359, 665
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 2 cut(s) 585, 600
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 190, 637
BseYI CCCAGC 1 cut(s) 663
Bsh1236I CGCG 2 cut(s) 132, 201
BshFI GGCC 2 cut(s) 549, 628
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 346
BsmAI GTCTC 4 cut(s) 377, 462, 585, 600
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 2 cut(s) 549, 628
Bso31I GGTCTC 2 cut(s) 585, 600
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 3 cut(s) 159, 250, 738
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 143, 199
BspANI GGCC 2 cut(s) 549, 628
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 2 cut(s) 132, 201
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 258
BspTNI GGTCTC 2 cut(s) 585, 600
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 159, 250, 738
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 179, 600
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 311, 316, 422
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 2 cut(s) 132, 201
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 3 cut(s) 162, 253, 741
BstMAI GTCTC 4 cut(s) 377, 462, 585, 600
BstMBI GATC 3 cut(s) 159, 250, 738
BstMWI GCNNNNNNNGC 3 cut(s) 212, 415, 578
BstNSI RCATGY 1 cut(s) 52
BstUI CGCG 2 cut(s) 132, 201
BstV1I GCAGC 2 cut(s) 190, 637
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 2 cut(s) 549, 628
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 22
CfoI GCGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 134, 387
CviAII CATG 7 cut(s) 13, 49, 297, 461, 483, 553, 633
CviQI GTAC 2 cut(s) 134, 387
DdeI CTNAG 3 cut(s) 311, 316, 422
DpnI GATC 3 cut(s) 161, 252, 740
DpnII GATC 3 cut(s) 159, 250, 738
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 628
Eco31I GGTCTC 2 cut(s) 585, 600
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 7 cut(s) 16, 52, 300, 464, 486, 556, 636
FaqI GGGAC 1 cut(s) 346
FatI CATG 7 cut(s) 12, 48, 296, 460, 482, 552, 632
Fnu4HI GCNGC 2 cut(s) 204, 651
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 204, 651
FspBI CTAG 1 cut(s) 479
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 204, 651
GsaI CCCAGC 1 cut(s) 667
HaeIII GGCC 2 cut(s) 549, 628
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 7 cut(s) 16, 52, 300, 464, 486, 556, 636
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 5 cut(s) 23, 72, 370, 380, 584
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 200, 339
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 5 cut(s) 169, 220, 294, 355, 542
Hpy188III TCNNGA 3 cut(s) 272, 588, 605
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 639
HpyCH4III ACNGT 2 cut(s) 179, 600
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 448, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 415, 578
HpyF3I CTNAG 3 cut(s) 311, 316, 422
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 7 cut(s) 16, 52, 300, 464, 486, 556, 636
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 3 cut(s) 159, 250, 738
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 5 cut(s) 40, 107, 458, 649, 658
Lsp1109I GCAGC 2 cut(s) 190, 637
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 319, 392
MalI GATC 3 cut(s) 161, 252, 740
MboI GATC 3 cut(s) 159, 250, 738
MboII GAAGA 3 cut(s) 144, 233, 420
MfeI CAATTG 2 cut(s) 35, 258
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 4 cut(s) 35, 237, 258, 286
MluI ACGCGT 1 cut(s) 130
MlyI GAGTC 3 cut(s) 32, 379, 578
MnlI CCTC 5 cut(s) 226, 448, 462, 611, 618
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 2 cut(s) 491, 510
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 409
MspI CCGG 1 cut(s) 27
MunI CAATTG 2 cut(s) 35, 258
MvnI CGCG 2 cut(s) 132, 201
MwoI GCNNNNNNNGC 3 cut(s) 212, 415, 578
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 159, 250, 738
NlaIII CATG 7 cut(s) 16, 52, 300, 464, 486, 556, 636
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 319, 392
NspI RCATGY 1 cut(s) 52
PceI AGGCCT 1 cut(s) 628
PciI ACATGT 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 72, 380
PkrI GCNGC 2 cut(s) 205, 652
PleI GAGTC 3 cut(s) 31, 378, 578
PpsI GAGTC 3 cut(s) 31, 378, 578
PscI ACATGT 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 663
PspN4I GGNNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 2 cut(s) 135, 388
RsaNI GTAC 2 cut(s) 134, 387
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 2 cut(s) 491, 510
SatI GCNGC 2 cut(s) 204, 651
Sau3AI GATC 3 cut(s) 159, 250, 738
SchI GAGTC 3 cut(s) 32, 379, 578
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 374, 680
SmoI CTYRAG 2 cut(s) 374, 680
Sse9I AATT 4 cut(s) 35, 237, 258, 286
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 2 cut(s) 143, 199
SspMI CTAG 1 cut(s) 479
StuI AGGCCT 1 cut(s) 628
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 179, 600
TaiI ACGT 1 cut(s) 326
TaqI TCGA 2 cut(s) 44, 604
TasI AATT 4 cut(s) 35, 237, 258, 286
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 2 cut(s) 72, 380
Tru1I TTAA 2 cut(s) 491, 510
Tru9I TTAA 2 cut(s) 491, 510
TseFI GTSAC 2 cut(s) 319, 392
TseI GCWGC 2 cut(s) 203, 650
Tsp45I GTSAC 2 cut(s) 319, 392
TspDTI ATGAA 4 cut(s) 420, 477, 569, 621
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 479
ZraI GACGTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.