RLG00000026582

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011453
Physical Location & Seq
Reverse (-)
4027689 .. 4029240
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026582

Sequence Viewer

Length: 633 bp
ATGTTCTCTTTGAGTGGAAATGGATTCTTTGGAGCCGTTGGTCGTAGCATAAACTTGGGGGGTCAAACTGCTCTGGCATTACGCGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCATCAGATACGAACCGTCCTTTCGGTGATGAGCTTGAAAGGGCTTGGAATTTCCTGACATGGACAGAGAAACTGAGCTTAGTGACGTCGGTTTTTCGTGGGATAACATCACCATCTGATATGTCCCAAAAGAGTGTCAAGGATTCAAGTACAAGTGACAGCACATTTCAGCTGTATGAGCAACTAAGTTCTTCATATCCCTCGCTCCTGCAACCTCTTATACATGAACGAGACACCTACCTTGCATGGTCTTTAAAGAGGAGCAAAGCTGTTAATAAGAGTAAGAGAGTGGTGGGGGTTATCGGAAAAGGCCACATGAATGGTGTAATCTATGCACTATTAGCTGACTCGGGAGACCTACGGTTTCGAGACCTCGTAGGAGGACAGAGACCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAGGTTGCTCAAGGACTTGGTTAGAGATACTATCATTGGCATTGTCTTGTGGGCATTATATGAGCAGATCAAAGATGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

211

Amino Acids

23.14

Weight (kDa)

9.52

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 43 - 147 5.8e-07 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 203
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 2 cut(s) 87, 265
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 108, 152, 261
AluBI AGCT 5 cut(s) 148, 192, 286, 383, 458
AluI AGCT 5 cut(s) 148, 192, 286, 383, 458
Alw26I GTCTC 4 cut(s) 339, 462, 477, 496
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 152, 216
AvaI CYCGRG 1 cut(s) 463
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 235, 617
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 4 cut(s) 339, 462, 477, 496
BglII AGATCT 1 cut(s) 111
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 200
BsaI GGTCTC 3 cut(s) 462, 477, 496
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 463
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 4 cut(s) 339, 462, 477, 496
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 3 cut(s) 462, 477, 496
BsoBI CYCGRG 1 cut(s) 463
Bsp143I GATC 2 cut(s) 111, 615
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 34
BspTNI GGTCTC 3 cut(s) 462, 477, 496
BssMI GATC 2 cut(s) 111, 615
BssNI GRCGYC 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 131, 477
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 188, 193, 299
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 2 cut(s) 114, 618
BstMAI GTCTC 4 cut(s) 339, 462, 477, 496
BstMBI GATC 2 cut(s) 111, 615
BstMWI GCNNNNNNNGC 2 cut(s) 292, 455
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 434
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 86, 264
CviAII CATG 5 cut(s) 174, 338, 360, 430, 510
CviJI RGCY 9 cut(s) 35, 148, 158, 192, 286, 383, 426, 458, 540
CviKI_1 RGCY 9 cut(s) 35, 148, 158, 192, 286, 383, 426, 458, 540
CviQI GTAC 2 cut(s) 86, 264
DdeI CTNAG 3 cut(s) 188, 193, 299
DpnI GATC 2 cut(s) 113, 617
DpnII GATC 2 cut(s) 111, 615
DraI TTTAAA 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco31I GGTCTC 3 cut(s) 462, 477, 496
Eco88I CYCGRG 1 cut(s) 463
FaeI CATG 5 cut(s) 177, 341, 363, 433, 513
FaqI GGGAC 1 cut(s) 223
FatI CATG 5 cut(s) 173, 337, 359, 429, 509
Fnu4HI GCNGC 1 cut(s) 528
Fsp4HI GCNGC 1 cut(s) 528
GluI GCNGC 1 cut(s) 528
GsaI CCCAGC 1 cut(s) 544
HaeIII GGCC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 5 cut(s) 177, 341, 363, 433, 513
HinfI GANTC 3 cut(s) 24, 257, 461
HphI GGTGA 2 cut(s) 152, 216
Hpy188I TCNGA 3 cut(s) 121, 232, 419
Hpy188III TCNNGA 3 cut(s) 169, 465, 482
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 2 cut(s) 131, 477
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 325, 359, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 455
HpyF3I CTNAG 3 cut(s) 188, 193, 299
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 5 cut(s) 177, 341, 363, 433, 513
Kzo9I GATC 2 cut(s) 111, 615
LmnI GCTCC 3 cut(s) 32, 324, 375
LpnPI CCDG 5 cut(s) 59, 182, 335, 526, 535
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 514
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 196, 269
MalI GATC 2 cut(s) 113, 617
MboI GATC 2 cut(s) 111, 615
MboII GAAGA 2 cut(s) 96, 297
MflI RGATCY 1 cut(s) 111
MluCI AATT 1 cut(s) 163
MluI ACGCGT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 5 cut(s) 325, 339, 366, 488, 497
MseI TTAA 2 cut(s) 368, 387
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 286
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 292, 455
NdeII GATC 2 cut(s) 111, 615
NlaIII CATG 5 cut(s) 177, 341, 363, 433, 513
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 196, 269
PfeI GAWTC 2 cut(s) 24, 257
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 2 cut(s) 87, 265
RsaNI GTAC 2 cut(s) 86, 264
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 2 cut(s) 368, 387
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 2 cut(s) 111, 615
SchI GAGTC 1 cut(s) 455
SfaNI GCATC 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 95
TaaI ACNGT 2 cut(s) 131, 477
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 481
TasI AATT 1 cut(s) 163
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 2 cut(s) 24, 257
Tru1I TTAA 2 cut(s) 368, 387
Tru9I TTAA 2 cut(s) 368, 387
TseFI GTSAC 2 cut(s) 196, 269
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 2 cut(s) 196, 269
TspDTI ATGAA 4 cut(s) 297, 354, 446, 498
XapI RAATTY 1 cut(s) 163
ZraI GACGTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.