FvH4_7g28970

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011453
Physical Location & Seq
Forward (+)
21399583 .. 21402038
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28970.t1

Sequence Viewer

Length: 813 bp
ATGTGGTTGTGGAGCTATGTAGAAGCAGAGCCCATTTTCAGAGCTGGGATTATGTATGCTTCCATGGATGACGAGTCGGGTCAACAACTGAAGTCGAACATGTTCTCTTTGAGTGGTAATGGATTCTTTGGAGCCGTTGGCCGTAGCATAAACTTGGGGGGACAAACTGCTCTGGCATTACGAGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCATCGAATATCAATCGTCCTTTCGGTGATGAGTTCCGAGCTGCTCGAAAAGCTTCTGAAGAAGTTGGTGCTCAAATTGTGTTGGGGGATCGTCCAATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGACATGGACAGAGAAACTGAGCTTAGTGACGTCAGTTTTTCGTGGGATAACATCTTCATCTGATATGTCCCAGATGAGTCTCAAGGAATCAAGTACAAGTGACAGCACCTTTCAGCTGTATGAGCAACTAAGTTCTTCATATCCCTCCCTCCTGCAACCTCTTATACATGAACGTGACACCTACCTTGCATGGTCTTTAAAGAGGAGCAAAGCTGTCAACAAGAGTAAGAGAGTGGTGGGGGTTATCGGAAAAGGCCACATGAATGGTGTAATCTATGCACTACTGGCTGACTCGGGAGACCTGCGGTTTCGAGACCTTGTAGGAGGACAGAGGCCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAAGTTGCTCAAGGACTTGGTTAGAGATACTATCATTGGCATCGTCTTGTGGGCATTTTATGAGCAGATAAAAGGTGGGTTTATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

271

Amino Acids

29.88

Weight (kDa)

8.73

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 77 - 205 1.2e-12 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 654
AciI CCGC 2 cut(s) 194, 649
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 110, 291
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 2 cut(s) 186, 439
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 207, 314, 326
AluBI AGCT 7 cut(s) 15, 44, 254, 266, 366, 460, 557
AluI AGCT 7 cut(s) 15, 44, 254, 266, 366, 460, 557
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 428, 636, 651
AlwI GGATC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 3 cut(s) 139, 598, 677
ApeKI GCWGC 2 cut(s) 254, 701
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 2 cut(s) 101, 265
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 637
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 241, 688
BceAI ACGGC 2 cut(s) 119, 126
BcoDI GTCTC 3 cut(s) 428, 636, 651
BfuAI ACCTGC 1 cut(s) 654
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 255, 702
BlsI GCNGC 2 cut(s) 256, 703
BmcAI AGTACT 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 2 cut(s) 688, 771
BpuEI CTTGAG 2 cut(s) 410, 716
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 2 cut(s) 636, 651
BsaJI CCNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 241, 688
BseYI CCCAGC 2 cut(s) 44, 714
BshFI GGCC 3 cut(s) 141, 600, 679
BsiHKAI GWGCWC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 637
BslFI GGGAC 2 cut(s) 174, 397
BsmAI GTCTC 3 cut(s) 428, 636, 651
BsmFI GGGAC 2 cut(s) 174, 397
BsnI GGCC 3 cut(s) 141, 600, 679
Bso31I GGTCTC 2 cut(s) 636, 651
BsoBI CYCGRG 1 cut(s) 637
Bsp1286I GDGCHC 2 cut(s) 33, 286
Bsp143I GATC 2 cut(s) 210, 301
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 194, 649
BspANI GGCC 3 cut(s) 141, 600, 679
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 654
BspPI GGATC 1 cut(s) 309
BspTNI GGTCTC 2 cut(s) 636, 651
BsrI ACTGG 1 cut(s) 633
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 210, 301
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 362, 367, 473
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 213, 304
BstMAI GTCTC 3 cut(s) 428, 636, 651
BstMBI GATC 2 cut(s) 210, 301
BstMWI GCNNNNNNNGC 3 cut(s) 263, 466, 629
BstNSI RCATGY 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 241, 688
BstX2I RGATCY 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 3 cut(s) 141, 600, 679
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 654
Csp6I GTAC 2 cut(s) 185, 438
CviAII CATG 7 cut(s) 64, 100, 348, 512, 534, 604, 684
CviQI GTAC 2 cut(s) 185, 438
DdeI CTNAG 3 cut(s) 362, 367, 473
DpnI GATC 2 cut(s) 212, 303
DpnII GATC 2 cut(s) 210, 301
DraI TTTAAA 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 2 cut(s) 636, 651
Eco57I CTGAAG 2 cut(s) 110, 291
Eco88I CYCGRG 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 7 cut(s) 67, 103, 351, 515, 537, 607, 687
FaqI GGGAC 2 cut(s) 174, 397
FatI CATG 7 cut(s) 63, 99, 347, 511, 533, 603, 683
Fnu4HI GCNGC 2 cut(s) 255, 702
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 2 cut(s) 255, 702
GluI GCNGC 2 cut(s) 255, 702
GsaI CCCAGC 2 cut(s) 48, 718
HaeIII GGCC 3 cut(s) 141, 600, 679
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 7 cut(s) 67, 103, 351, 515, 537, 607, 687
HincII GTYRAC 2 cut(s) 83, 562
HindII GTYRAC 2 cut(s) 83, 562
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 5 cut(s) 74, 123, 421, 431, 635
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 83, 562
Hpy188I TCNGA 6 cut(s) 41, 251, 271, 345, 406, 593
Hpy188III TCNNGA 3 cut(s) 323, 639, 656
Hpy8I GTNNAC 2 cut(s) 83, 562
HpyAV CCTTC 1 cut(s) 690
HpyCH4IV ACGT 2 cut(s) 374, 517
HpyCH4V TGCA 3 cut(s) 499, 533, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 466, 629
HpyF3I CTNAG 3 cut(s) 362, 367, 473
HpySE526I ACGT 2 cut(s) 374, 517
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 7 cut(s) 67, 103, 351, 515, 537, 607, 687
Kzo9I GATC 2 cut(s) 210, 301
LmnI GCTCC 3 cut(s) 12, 131, 549
LpnPI CCDG 7 cut(s) 30, 158, 428, 509, 614, 659, 700
Lsp1109I GCAGC 2 cut(s) 241, 688
LweI GCATC 2 cut(s) 688, 771
MaeII ACGT 2 cut(s) 374, 517
MaeIII GTNAC 3 cut(s) 370, 443, 518
MalI GATC 2 cut(s) 212, 303
MboI GATC 2 cut(s) 210, 301
MboII GAAGA 4 cut(s) 195, 284, 390, 471
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 33, 286
MluCI AATT 3 cut(s) 288, 309, 337
MlyI GAGTC 3 cut(s) 83, 430, 629
MnlI CCTC 6 cut(s) 499, 503, 513, 540, 662, 669
MroXI GAANNNNTTC 2 cut(s) 101, 265
MseI TTAA 1 cut(s) 542
MslI CAYNNNNRTG 2 cut(s) 516, 606
MspA1I CMGCKG 1 cut(s) 460
MunI CAATTG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 263, 466, 629
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 210, 301
NlaIII CATG 7 cut(s) 67, 103, 351, 515, 537, 607, 687
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 3 cut(s) 370, 443, 518
NspI RCATGY 1 cut(s) 103
PceI AGGCCT 1 cut(s) 679
PciI ACATGT 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 101, 265
PfeI GAWTC 2 cut(s) 123, 431
PkrI GCNGC 2 cut(s) 256, 703
PleI GAGTC 3 cut(s) 82, 429, 629
PpsI GAGTC 3 cut(s) 82, 429, 629
PscI ACATGT 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 44, 714
PspN4I GGNNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 186, 439
RsaNI GTAC 2 cut(s) 185, 438
RseI CAYNNNNRTG 2 cut(s) 516, 606
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 2 cut(s) 255, 702
Sau3AI GATC 2 cut(s) 210, 301
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 3 cut(s) 83, 430, 629
SduI GDGCHC 2 cut(s) 33, 286
SfaNI GCATC 2 cut(s) 688, 771
SmiMI CAYNNNNRTG 2 cut(s) 516, 606
SmlI CTYRAG 2 cut(s) 425, 731
SmoI CTYRAG 2 cut(s) 425, 731
Sse9I AATT 3 cut(s) 288, 309, 337
SseBI AGGCCT 1 cut(s) 679
SsiI CCGC 2 cut(s) 194, 649
StuI AGGCCT 1 cut(s) 679
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 2 cut(s) 377, 520
TaqI TCGA 4 cut(s) 95, 218, 259, 655
TasI AATT 3 cut(s) 288, 309, 337
TatI WGTACW 2 cut(s) 184, 437
TfiI GAWTC 2 cut(s) 123, 431
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TseFI GTSAC 3 cut(s) 370, 443, 518
TseI GCWGC 2 cut(s) 254, 701
Tsp45I GTSAC 3 cut(s) 370, 443, 518
TspDTI ATGAA 5 cut(s) 390, 471, 528, 620, 672
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 103
XmnI GAANNNNTTC 2 cut(s) 101, 265
ZraI GACGTC 1 cut(s) 375
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.