Rh1AG414300

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011453
Physical Location & Seq
Forward (+)
64657237 .. 64659422
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG414300.1

Sequence Viewer

Length: 1146 bp
ATGGAGACCATTCACTCAAGCTTTTCAATTTTCCACACAAACCCAGTTTTCTTCACCCGCAAGCCTCGTAGACCCATCAAGGTTTCCATCAAACCTCCACCACCAGACTTCGATTTCAGGTCAGAAATATTGGAAGACTCGAGAGCCACAATCGCAAAAACTTACCCTGAATTGCTTGATTTGGCTGAAAATGGGAGCTTGTTCTTGGTCGATAAGAGCCGGTTCGGCCCGGTTCCCGCATGGAGAGCCGAGTTCGTTGAGCCTGAGGCGATATGGTTAGTTGGAACCACTCATATTTCTCAGGACTCTGCTCTGGAGGTTGAGCGTGTAGTCCGGGCAGTGAAACCTGATAATGTGGTTGTGGAGCTATGTAGAAGCAGAGCTGGGATTATGTATGCTTCCATGGATGATGAGTCCGATCATCAATTGAAGTCTAACATGTTCTCTTTGAGTGGAAATGGATTCTTTGGAGCCGTTGGTCGTAGCATAAACTTGGGGGGTCAAACTGCTCTGGCATTACGCGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCGTCAGATACCAACCGTCCTTTCGGTGATGAGTTCCGCGCTGCTCGTAAAGCCTCTGAAGAAGTTGGTGCTCAAATTGTTTTGGGGGATCGCCCAATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGACATGGACAGAGAAACTGAGCTTAGTGACGTCGGTTTTTCGTGGGATAACATCACCATCTGATATGTCCCAAAAGAGTCTCAAGGATTCAAGTACAAGTGACAGCACATTTCAGCTGTATGAGCAACTAAGTTCTTCATATCCCTCACTCCTGCAACCTCTTATACATGAACGAGACACCTATCTAGCATGGTCTTTAAAGAGAAGCAAAGCTGTTAATAAGAGTAAGAGAGTGGTGGGGGTTATCGGAAAAGGCCACATGAATGGTGTAATCTATGCACTATTAGCTGACTCGGGAGACCTACGGTTTCGAGACCTTGTTGGAGGACAGAGGCCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAGGTTGCTCAAGGACTTGGTTAGAGATACTATCATTGGCATTGTCTTGTGGGCATTATATGAGCAGATCAAAGATGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

381

Amino Acids

42.37

Weight (kDa)

7.82

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 81 - 318 5.8e-22 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 716
AccI GTMKAC 1 cut(s) 70
AccII CGCG 2 cut(s) 522, 591
AciI CCGC 4 cut(s) 58, 237, 533, 589
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 713
AfaI GTAC 2 cut(s) 525, 778
AflIII ACRYGT 2 cut(s) 438, 520
AgsI TTSAA 6 cut(s) 27, 430, 546, 653, 665, 774
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 8 cut(s) 21, 198, 367, 383, 705, 799, 896, 971
AluI AGCT 8 cut(s) 21, 198, 367, 383, 705, 799, 896, 971
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 4 cut(s) 767, 852, 975, 990
AlwI GGATC 1 cut(s) 648
Ama87I CYCGRG 2 cut(s) 139, 976
AoxI GGCC 3 cut(s) 226, 937, 1016
ApeKI GCWGC 2 cut(s) 593, 1040
ApoI RAATTY 1 cut(s) 676
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 2 cut(s) 230, 335
AsuHPI GGTGA 3 cut(s) 46, 590, 729
AvaI CYCGRG 2 cut(s) 139, 976
AxyI CCTNAGG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 580, 1027
BccI CCATC 4 cut(s) 83, 95, 748, 1130
BceAI ACGGC 1 cut(s) 458
BcnI CCSGG 2 cut(s) 230, 335
BcoDI GTCTC 4 cut(s) 767, 852, 975, 990
BfaI CTAG 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 225
BglII AGATCT 1 cut(s) 549
BisI GCNGC 2 cut(s) 594, 1041
BlsI GCNGC 2 cut(s) 595, 1042
Bme1390I CCNGG 2 cut(s) 230, 335
BmeT110I CYCGRG 2 cut(s) 139, 976
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 3 cut(s) 234, 286, 472
BmrFI CCNGG 2 cut(s) 230, 335
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 1027
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 749, 1055
BpuMI CCSGG 2 cut(s) 230, 335
BsaHI GRCGYC 1 cut(s) 713
BsaI GGTCTC 2 cut(s) 975, 990
BsaJI CCNNGG 1 cut(s) 402
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 255, 314, 692
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 580, 1027
BseYI CCCAGC 2 cut(s) 383, 1053
Bsh1236I CGCG 2 cut(s) 522, 591
BshFI GGCC 3 cut(s) 228, 939, 1018
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 2 cut(s) 139, 976
BsiSI CCGG 3 cut(s) 220, 230, 334
BslFI GGGAC 1 cut(s) 736
BsmAI GTCTC 4 cut(s) 767, 852, 975, 990
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 3 cut(s) 228, 939, 1018
Bso31I GGTCTC 2 cut(s) 975, 990
BsoBI CYCGRG 2 cut(s) 139, 976
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 4 cut(s) 418, 549, 640, 1128
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 4 cut(s) 58, 237, 533, 589
BspANI GGCC 3 cut(s) 228, 939, 1018
BspCNI CTCAG 3 cut(s) 256, 313, 693
BspFNI CGCG 2 cut(s) 522, 591
BspLI GGNNCC 3 cut(s) 234, 286, 472
BspPI GGATC 1 cut(s) 648
BspTNI GGTCTC 2 cut(s) 975, 990
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 4 cut(s) 418, 549, 640, 1128
BssNI GRCGYC 1 cut(s) 713
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 569, 990
Bst6I CTCTTC 1 cut(s) 547
BstACI GRCGYC 1 cut(s) 713
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 5 cut(s) 264, 300, 701, 706, 812
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 2 cut(s) 522, 591
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 4 cut(s) 421, 552, 643, 1131
BstMAI GTCTC 4 cut(s) 767, 852, 975, 990
BstMBI GATC 4 cut(s) 418, 549, 640, 1128
BstMWI GCNNNNNNNGC 6 cut(s) 152, 225, 245, 602, 805, 968
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 228, 333
BstUI CGCG 2 cut(s) 522, 591
BstV1I GCAGC 2 cut(s) 580, 1027
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 3 cut(s) 228, 939, 1018
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 524, 777
CviAII CATG 8 cut(s) 240, 403, 439, 687, 851, 873, 943, 1023
CviQI GTAC 2 cut(s) 524, 777
DdeI CTNAG 5 cut(s) 264, 300, 701, 706, 812
DpnI GATC 4 cut(s) 420, 551, 642, 1130
DpnII GATC 4 cut(s) 418, 549, 640, 1128
DraI TTTAAA 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 402
Eco147I AGGCCT 1 cut(s) 1018
Eco31I GGTCTC 2 cut(s) 975, 990
Eco57I CTGAAG 1 cut(s) 630
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 139, 976
EcoRI GAATTC 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 8 cut(s) 243, 406, 442, 690, 854, 876, 946, 1026
FaqI GGGAC 1 cut(s) 736
FatI CATG 8 cut(s) 239, 402, 438, 686, 850, 872, 942, 1022
FauI CCCGC 2 cut(s) 65, 244
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 594, 1041
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 594, 1041
FspBI CTAG 1 cut(s) 869
GlaI GCGC 1 cut(s) 592
GluI GCNGC 2 cut(s) 594, 1041
GsaI CCCAGC 2 cut(s) 387, 1057
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 3 cut(s) 228, 939, 1018
HapII CCGG 3 cut(s) 220, 230, 334
HhaI GCGC 1 cut(s) 593
Hin1I GRCGYC 1 cut(s) 713
Hin1II CATG 8 cut(s) 243, 406, 442, 690, 854, 876, 946, 1026
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 7 cut(s) 137, 305, 413, 462, 760, 770, 974
HpaII CCGG 3 cut(s) 220, 230, 334
HphI GGTGA 3 cut(s) 46, 590, 729
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 7 cut(s) 124, 418, 559, 610, 684, 745, 932
Hpy188III TCNNGA 6 cut(s) 141, 302, 314, 662, 978, 995
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 1 cut(s) 1029
HpyCH4III ACNGT 2 cut(s) 569, 990
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 2 cut(s) 838, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 225, 245, 602, 805, 968
HpyF3I CTNAG 5 cut(s) 264, 300, 701, 706, 812
HpySE526I ACGT 1 cut(s) 713
Hsp92I GRCGYC 1 cut(s) 713
Hsp92II CATG 8 cut(s) 243, 406, 442, 690, 854, 876, 946, 1026
HspAI GCGC 1 cut(s) 591
Kzo9I GATC 4 cut(s) 418, 549, 640, 1128
LmnI GCTCC 3 cut(s) 195, 364, 470
Lsp1109I GCAGC 2 cut(s) 580, 1027
LweI GCATC 1 cut(s) 1027
MaeI CTAG 1 cut(s) 869
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 2 cut(s) 709, 782
MalI GATC 4 cut(s) 420, 551, 642, 1130
MboI GATC 4 cut(s) 418, 549, 640, 1128
MboII GAAGA 5 cut(s) 43, 146, 534, 623, 810
MfeI CAATTG 2 cut(s) 425, 648
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 6 cut(s) 27, 170, 425, 627, 648, 676
MluI ACGCGT 1 cut(s) 520
MlyI GAGTC 5 cut(s) 131, 299, 422, 769, 968
MmeI TCCRAC 2 cut(s) 262, 985
MnlI CCTC 9 cut(s) 75, 105, 259, 310, 616, 838, 852, 1001, 1008
MseI TTAA 2 cut(s) 881, 900
MslI CAYNNNNRTG 1 cut(s) 945
MspA1I CMGCKG 1 cut(s) 799
MspI CCGG 3 cut(s) 220, 230, 334
MspR9I CCNGG 2 cut(s) 230, 335
MunI CAATTG 2 cut(s) 425, 648
MvnI CGCG 2 cut(s) 522, 591
MwoI GCNNNNNNNGC 6 cut(s) 152, 225, 245, 602, 805, 968
NciI CCSGG 2 cut(s) 230, 335
NcoI CCATGG 1 cut(s) 402
NdeII GATC 4 cut(s) 418, 549, 640, 1128
NlaIII CATG 8 cut(s) 243, 406, 442, 690, 854, 876, 946, 1026
NlaIV GGNNCC 3 cut(s) 234, 286, 472
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 709, 782
NspI RCATGY 1 cut(s) 442
PaeR7I CTCGAG 1 cut(s) 139
PceI AGGCCT 1 cut(s) 1018
PciI ACATGT 1 cut(s) 438
PfeI GAWTC 2 cut(s) 462, 770
PkrI GCNGC 2 cut(s) 595, 1042
PleI GAGTC 5 cut(s) 131, 299, 421, 768, 968
PpsI GAGTC 5 cut(s) 131, 299, 421, 768, 968
PscI ACATGT 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 383, 1053
PspN4I GGNNCC 3 cut(s) 234, 286, 472
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 2 cut(s) 525, 778
RsaNI GTAC 2 cut(s) 524, 777
RseI CAYNNNNRTG 1 cut(s) 945
SaqAI TTAA 2 cut(s) 881, 900
SatI GCNGC 2 cut(s) 594, 1041
Sau3AI GATC 4 cut(s) 418, 549, 640, 1128
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 5 cut(s) 131, 299, 422, 769, 968
ScrFI CCNGG 2 cut(s) 230, 335
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 1027
Sfr274I CTCGAG 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 4 cut(s) 16, 139, 764, 1070
SmoI CTYRAG 4 cut(s) 16, 139, 764, 1070
Sse9I AATT 6 cut(s) 27, 170, 425, 627, 648, 676
SseBI AGGCCT 1 cut(s) 1018
SsiI CCGC 4 cut(s) 58, 237, 533, 589
SspI AATATT 1 cut(s) 129
SspMI CTAG 1 cut(s) 869
StuI AGGCCT 1 cut(s) 1018
StyD4I CCNGG 2 cut(s) 228, 333
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 569, 990
TaiI ACGT 1 cut(s) 716
TaqI TCGA 4 cut(s) 111, 140, 210, 994
TasI AATT 6 cut(s) 27, 170, 425, 627, 648, 676
TatI WGTACW 1 cut(s) 776
TfiI GAWTC 2 cut(s) 462, 770
Tru1I TTAA 2 cut(s) 881, 900
Tru9I TTAA 2 cut(s) 881, 900
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 2 cut(s) 709, 782
TseI GCWGC 2 cut(s) 593, 1040
Tsp45I GTSAC 2 cut(s) 709, 782
TspDTI ATGAA 4 cut(s) 810, 867, 959, 1011
TspRI CASTG 1 cut(s) 345
XapI RAATTY 1 cut(s) 676
XceI RCATGY 1 cut(s) 442
XhoI CTCGAG 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 1 cut(s) 869
ZraI GACGTC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.