Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004094

Physical Location & Seq

Genomic Coordinates Reverse (-)

21247355 .. 21250426

Gene Structure 3072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCAAAGACTGATGTGGATGATGAGTATGGTCTTAAACCCTCTGAGTTATATGGAAAAAATACATGGAAGATTAAGAAATTTTCACAAATCAGCAAAAGGGAGTTCGCTAGCAGTGTTTTTGAAATTGGAGGCTACAGTTGGCATATTTTAATGTATCCAGAAGGATGTGATGTTAGCAATCATCTCTCATTATTTCTCTGTGTTGCAAACCATGATGAACTTCTTCCAGGCTGGAGTCAGTTGGCTCAGTTTACTATATCTGTGATGCATAAAGATCCAAAGAAGTCTAAGTTTTCAGATACGCTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAAAAGTTTATGGAGTTACCGAAGTTACGGGATGGCTTCATAGATGATTCTGGCTGTCTTACAATTGAAACTAAAGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTTCTTCCTTGATTATGGTTACAAGACAGAAATTGTTAGGGTGTATTTTCGAAATATAGAGCAAATTTTCCTACGCTTTGTGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGATAGAGGACAAGGCCAAATGGACAAGCTTCGGTGTTTTCTGGTTAGGAATGGACAAAAACTCTAGGCGTGAGATGTCTAGAGAGAAAATGGACGTAATCCTAAAAGGATTTGTAAAACACTTTTTCATGGAAAATGTTGTTACATCACCTATAGCGATGGATTGCTTGTATAATGGGTTGAAGGATCTTGAAGTCCAAACTAAGAACAAGAAAGCTAGCCCAAAACTGTTAGATGACAAGGAATTGCCAGCTCCGTTTGTTAAAGTGGACAGAGATATGTTCGTATTAGTTGATGATGATGTGTTGTTACTCCTAGAGAGGGCTGCACTCCTAGAGAGGGCTGCTCCAGAGCCATTGCCTCCGAAAGATGATAAAGCTCTTCAAAACCGTATTAAGGAGGACAAGGATGAAGAAGATATCAACAAGGAAGCTTATGAGATATGTTTAAATGAGTGGGGTAGACGAACTGTGGAGATATTTGTTCTTGACCATATCTTTAGCAAAATTGAGGTTGCATACAAAGAAGCTATTGCGCTTAAAAGGCAGGAAGAACTTATCCGTGAAGAAGAGGAAACTTCAAAACGGAGCAAAGTGCTAAAAAAGGGTTTTGGGAAATGTAGACTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0061919 GO:0071840 GO:0071944 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

397

Amino Acids

46.77

Weight (kDa)

7.09

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 141	5.5e-28	MATH domain
MATH	PF00917	25 - 141	2e-20	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT5G43560 AT5G43560 AT5G52330 AT5G52330 AT5G52330 AT5G52330
fragaria_vesca	FvH4_4g02970 FvH4_4g02970
malus_domestica	MD13G1209100.v1.1 MD16G1211000.v1.1
prunus_persica	Prupe.1G033200_v2.0.a1 Prupe.1G033200_v2.0.a1
pyrus_communis	pycom13g18110 pycom13g18140 pycom16g17710
rosa_chinensis	RchiOBHm_Chr4g0391041
rosa_laevigata	RLG00000009900
rosa_multiflora	Rmu_sc0001824.1_g000032
rosa_roxburghii	Rroxscaffold_5G00336880
rosa_rugosa	Rorug03G0333900 Rorug03G0333900 Rorug03G0334000
rosa_samantha	Rh4AG034400 Rh4BG029300 Rh4CG038100 Rh4DG031700
rosa_wichuraiana	Rw4G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1024, 1183
AclWI	GGATC	2 cut(s)	272, 756
AcsI	RAATTY	2 cut(s)	80, 516
AfiI	CCNNNNNNNGG	3 cut(s)	883, 901, 958
AgeI	ACCGGT	1 cut(s)	312
AgsI	TTSAA	6 cut(s)	125, 413, 745, 755, 947, 1143
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	7 cut(s)	553, 591, 779, 815, 941, 995, 1091
AluI	AGCT	7 cut(s)	553, 591, 779, 815, 941, 995, 1091
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	272, 756
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	3 cut(s)	307, 887, 905
ApoI	RAATTY	2 cut(s)	80, 516
AsiGI	ACCGGT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	1099
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	439, 702
AsuII	TTCGAA	1 cut(s)	502
AsuNHI	GCTAGC	2 cut(s)	110, 779
AvaII	GGWCC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	294, 874, 892
BccI	CCATC	3 cut(s)	336, 371, 715
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	6 cut(s)	111, 627, 642, 780, 878, 896
BfmI	CTRYAG	2 cut(s)	136, 714
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	3 cut(s)	308, 888, 906
BlsI	GCNGC	3 cut(s)	309, 889, 907
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	258
BmtI	GCTAGC	2 cut(s)	114, 783
BplI	GAGNNNNNCTC	2 cut(s)	892, 924
BpmI	CTGGAG	2 cut(s)	256, 894
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	883, 901, 958
Bse118I	RCCGGY	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	231
BseGI	GGATG	5 cut(s)	25, 173, 347, 382, 976
BseLI	CCNNNNNNNGG	3 cut(s)	883, 901, 958
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	2 cut(s)	36, 263
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	3 cut(s)	294, 874, 892
BsgI	GTGCAG	2 cut(s)	293, 873
BshFI	GGCC	1 cut(s)	578
BshTI	ACCGGT	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	883, 901, 958
BsmAI	GTCTC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	578
Bsp119I	TTCGAA	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	277, 429, 748
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	37, 262
BspOI	GCTAGC	2 cut(s)	114, 783
BspPI	GGATC	2 cut(s)	272, 756
BspQI	GCTCTTC	1 cut(s)	948
BspT104I	TTCGAA	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	917
BsrFI	RCCGGY	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	312
BssMI	GATC	3 cut(s)	277, 429, 748
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	140, 792, 953, 1033
Bst6I	CTCTTC	2 cut(s)	948, 1125
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	4 cut(s)	112, 551, 781, 813
BstDEI	CTNAG	4 cut(s)	45, 249, 291, 765
BstF5I	GGATG	5 cut(s)	25, 173, 347, 382, 976
BstHHI	GCGC	1 cut(s)	1099
BstKTI	GATC	3 cut(s)	280, 432, 751
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	277, 429, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	1105
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	136, 714
BstV1I	GCAGC	3 cut(s)	294, 874, 892
BstX2I	RGATCY	2 cut(s)	277, 748
BstYI	RGATCY	2 cut(s)	277, 748
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	734
BtsCI	GGATG	5 cut(s)	25, 173, 347, 382, 976
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	4 cut(s)	112, 551, 781, 813
CfoI	GCGC	1 cut(s)	1099
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	445
CspAI	ACCGGT	1 cut(s)	312
CviAII	CATG	4 cut(s)	66, 215, 332, 691
DdeI	CTNAG	4 cut(s)	45, 249, 291, 765
DpnI	GATC	3 cut(s)	279, 431, 750
DpnII	GATC	3 cut(s)	277, 429, 748
DraI	TTTAAA	1 cut(s)	1011
Eam1104I	CTCTTC	2 cut(s)	948, 1125
EarI	CTCTTC	2 cut(s)	948, 1125
Eco32I	GATATC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	273
FaeI	CATG	4 cut(s)	69, 218, 335, 694
FatI	CATG	4 cut(s)	65, 214, 331, 690
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	2 cut(s)	1024, 1183
Fnu4HI	GCNGC	3 cut(s)	308, 888, 906
FokI	GGATG	5 cut(s)	32, 180, 354, 389, 983
Fsp4HI	GCNGC	3 cut(s)	308, 888, 906
FspBI	CTAG	6 cut(s)	111, 627, 642, 780, 878, 896
GlaI	GCGC	1 cut(s)	1098
GluI	GCNGC	3 cut(s)	308, 888, 906
GsuI	CTGGAG	2 cut(s)	256, 894
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	313
HhaI	GCGC	1 cut(s)	1099
Hin1II	CATG	4 cut(s)	69, 218, 335, 694
Hin6I	GCGC	1 cut(s)	1097
HinP1I	GCGC	1 cut(s)	1097
HindIII	AAGCTT	3 cut(s)	551, 589, 993
HinfI	GANTC	2 cut(s)	238, 392
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	2 cut(s)	439, 702
Hpy166II	GTNNAC	5 cut(s)	255, 445, 832, 1025, 1184
Hpy188I	TCNGA	4 cut(s)	46, 301, 434, 927
Hpy188III	TCNNGA	5 cut(s)	161, 642, 752, 911, 1049
Hpy8I	GTNNAC	5 cut(s)	255, 445, 832, 1025, 1184
HpyAV	CCTTC	2 cut(s)	158, 739
HpyCH4III	ACNGT	4 cut(s)	140, 792, 953, 1033
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	5 cut(s)	209, 271, 310, 890, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1105
HpyF3I	CTNAG	4 cut(s)	45, 249, 291, 765
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	4 cut(s)	69, 218, 335, 694
HspAI	GCGC	1 cut(s)	1097
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	277, 429, 748
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	3 cut(s)	820, 913, 1149
Lsp1109I	GCAGC	3 cut(s)	294, 874, 892
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	6 cut(s)	111, 627, 642, 780, 878, 896
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	5 cut(s)	360, 369, 470, 703, 870
MalI	GATC	3 cut(s)	279, 431, 750
MboI	GATC	3 cut(s)	277, 429, 748
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	277, 748
MluCI	AATT	8 cut(s)	80, 126, 408, 483, 516, 806, 1068, 1189
MlyI	GAGTC	1 cut(s)	247
Mph1103I	ATGCAT	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	7 cut(s)	36, 75, 152, 825, 957, 1010, 1101
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	1105
NdeII	GATC	3 cut(s)	277, 429, 748
NheI	GCTAGC	2 cut(s)	110, 779
NlaIII	CATG	4 cut(s)	69, 218, 335, 694
NsiI	ATGCAT	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	948
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	392
PinAI	ACCGGT	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	309, 889, 907
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	277, 748
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	7 cut(s)	36, 75, 152, 825, 957, 1010, 1101
SatI	GCNGC	3 cut(s)	308, 888, 906
Sau3AI	GATC	3 cut(s)	277, 429, 748
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	2 cut(s)	136, 714
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	8 cut(s)	80, 126, 408, 483, 516, 806, 1068, 1189
SspMI	CTAG	6 cut(s)	111, 627, 642, 780, 878, 896
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	4 cut(s)	140, 792, 953, 1033
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	1 cut(s)	502
TaqII	GACCGA	1 cut(s)	462
TasI	AATT	8 cut(s)	80, 126, 408, 483, 516, 806, 1068, 1189
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	7 cut(s)	36, 75, 152, 825, 957, 1010, 1101
Tru9I	TTAA	7 cut(s)	36, 75, 152, 825, 957, 1010, 1101
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	3 cut(s)	307, 887, 905
TspDTI	ATGAA	4 cut(s)	234, 373, 679, 987
TspGWI	ACGGA	3 cut(s)	807, 1112, 1162
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	2 cut(s)	80, 516
XbaI	TCTAGA	1 cut(s)	641
XmiI	GTMKAC	2 cut(s)	1024, 1183
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	6 cut(s)	111, 627, 642, 780, 878, 896
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.