Rorug03G0334000

MATH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004094
Physical Location & Seq
Reverse (-)
39187559 .. 39189620
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0334000.1

Sequence Viewer

Length: 1248 bp
ATGCAGAATAATCTGGACGGTGAGCTCAATGTAGTGAAGAAGAGGTTGGTTTTAAATGATGATGCAGGACTGTTAGTTGAAGAGAACCATGAAGTTCCAGAAGGGAAGCACAAACTAACGGCAATAATCGAGGAGGTTAAGGACATCATGGCTCCCAAAACTTCAGCAAATGATGATCTGGAGACGATTGTTGCGGTGCATGAGTGTGAACTGGCAGTAGATAGGGTGGACAACATTGTTGCTATTGGAACAATTATTCAAGTTAATGTTGCGTCGAGAGATCAGCTGATACATGGTGTTCCATTGGGAAAGGACAATATGTGCGTCTCAGTTGTTCGAGCCATTGTTGATGATGCCTTGTTACCTATTCCAGTGAAGGATGAGATTGTCACTGTCAGCGACGCCATTGGTACTTGTGTTGCCTGGCCAAGAAACCTGGTTGTTATCCCTGGAGAAAAGGCACCCACTAAAGCCATTCAGCAGAAGAAAATAAATCATGCTAATACCAAGAAGAGAATGAGAGATGTATTTGATGACAATGAAGACCTTCAAAACTTGCCACCGAATCTGCCAACGACATTAAAGGATTTGTGCACGTGGGGGAACACTTTCCTTAGAGACGGGGTCACCATCCACACAACATTTGCTGCGGACCTTTTCGGCCATTCAAAGAAAGTCTTTCTGTTTAGAAGTGATCTCTATACCATGGCCAACAAGCTAGAAGTATCAAATCGTGTACTTGTGTTTTACATGAGCTACCTTCATGAAGTCTTGAAGAAGTGTAAGATGGTGGATATGGTTGCCTTTGTCGATCCTGATCAGACTGGTACACTTGGGTGTGGAAATCCCACTGAAAGGGCTCGGTCTTTGTCAGATCGGTATAGGCAAGGGAGGTTAGGACAAATCTTTGTGGTTCCATATAACTCGGGTGCTCATTGGATGTTGACGGTTGTGAACCCAAATGAAGAAGTCGTGCACTTCATGGATCCACTTAAACGGCGACTCGATATTGGGGAATGGAAATCTATTATCAACAATTTTATGTACTTCATTGGTATTCCTGAGCAAAAAAATGACAAGACTTGTGGATATTTCATTATGCGTTACATGAAAGAAATTGTGGAGGACAAGAACTTGGATTTTAGTATTAAGTGGGGAACGAGGTCAAATTTGGTTTACACAGACAAGGATATTGATGAGATCCGAGCGGAATGGGCTAAGCATGTTTTGAAGTTCCCAGAAAATTAA

Protein Analysis

415

Amino Acids

47.09

Weight (kDa)

5.82

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 61 - 149 5.5e-13 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 1208
AciI CCGC 3 cut(s) 194, 650, 1208
AclWI GGATC 4 cut(s) 806, 980, 993, 1195
AcoI YGGCCR 3 cut(s) 425, 661, 708
AcsI RAATTY 1 cut(s) 1168
AcuI CTGAAG 1 cut(s) 147
AcvI CACGTG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 4 cut(s) 412, 738, 829, 1046
AfiI CCNNNNNNNGG 1 cut(s) 855
AgsI TTSAA 6 cut(s) 80, 260, 551, 669, 775, 1231
AjnI CCWGG 3 cut(s) 422, 435, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AleI CACNNNNGTG 1 cut(s) 835
AluBI AGCT 4 cut(s) 25, 286, 718, 756
AluI AGCT 4 cut(s) 25, 286, 718, 756
Alw21I GWGCWC 4 cut(s) 27, 596, 934, 978
Alw26I GTCTC 3 cut(s) 176, 331, 612
Alw44I GTGCAC 2 cut(s) 592, 974
AlwI GGATC 4 cut(s) 806, 980, 993, 1195
Ama87I CYCGRG 1 cut(s) 925
AoxI GGCC 3 cut(s) 425, 661, 708
ApaLI GTGCAC 2 cut(s) 592, 974
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 1168
Asp700I GAANNNNTTC 2 cut(s) 546, 608
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 2 cut(s) 32, 619
AvaI CYCGRG 1 cut(s) 925
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 2 cut(s) 596, 978
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BalI TGGCCA 2 cut(s) 427, 710
BamHI GGATCC 1 cut(s) 985
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 2 cut(s) 27, 862
BbrPI CACGTG 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 4 cut(s) 27, 596, 934, 978
BbvI GCAGC 1 cut(s) 634
BccI CCATC 2 cut(s) 638, 781
BceAI ACGGC 2 cut(s) 135, 1013
BciT130I CCWGG 3 cut(s) 424, 437, 450
BclI TGATCA 1 cut(s) 817
BcoDI GTCTC 3 cut(s) 176, 331, 612
BfaI CTAG 1 cut(s) 719
BisI GCNGC 1 cut(s) 648
BlpI GCTNAGC 1 cut(s) 1218
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 3 cut(s) 424, 437, 450
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 4 cut(s) 153, 462, 915, 987
BmrFI CCNGG 3 cut(s) 424, 437, 450
BmsI GCATC 2 cut(s) 52, 343
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 2 cut(s) 200, 471
Bpu10I CCTNAGC 1 cut(s) 1062
Bpu1102I GCTNAGC 1 cut(s) 1218
BsaAI YACGTR 1 cut(s) 597
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 448, 705
Bsc4I CCNNNNNNNGG 1 cut(s) 855
Bse1I ACTGG 3 cut(s) 216, 371, 829
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 3 cut(s) 424, 437, 450
BseDI CCNNGG 2 cut(s) 448, 705
BseGI GGATG 3 cut(s) 385, 630, 945
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 342, 1053
BseNI ACTGG 3 cut(s) 216, 371, 829
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 2 cut(s) 596, 978
BseXI GCAGC 1 cut(s) 634
BshFI GGCC 3 cut(s) 427, 663, 710
BshNI GGYRCC 1 cut(s) 460
BsiHKAI GWGCWC 4 cut(s) 27, 596, 934, 978
BsiHKCI CYCGRG 1 cut(s) 925
BslI CCNNNNNNNGG 1 cut(s) 855
BsmAI GTCTC 3 cut(s) 176, 331, 612
BsmBI CGTCTC 3 cut(s) 176, 331, 612
BsnI GGCC 3 cut(s) 427, 663, 710
BsoBI CYCGRG 1 cut(s) 925
Bsp1286I GDGCHC 5 cut(s) 27, 596, 862, 934, 978
Bsp143I GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
Bsp1720I GCTNAGC 1 cut(s) 1218
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 3 cut(s) 194, 650, 1208
BspANI GGCC 3 cut(s) 427, 663, 710
BspCNI CTCAG 2 cut(s) 341, 1054
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 153, 462, 915, 987
BspPI GGATC 4 cut(s) 806, 980, 993, 1195
BspT107I GGYRCC 1 cut(s) 460
BsrBI CCGCTC 1 cut(s) 1208
BsrI ACTGG 3 cut(s) 216, 371, 829
BssECI CCNNGG 2 cut(s) 448, 705
BssMI GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 3 cut(s) 424, 437, 450
Bst4CI ACNGT 4 cut(s) 20, 72, 394, 949
Bst6I CTCTTC 3 cut(s) 35, 75, 506
BstACI GRCGYC 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 597
BstDEI CTNAG 4 cut(s) 328, 614, 1062, 1218
BstDSI CCRYGG 1 cut(s) 705
BstEII GGTNACC 1 cut(s) 625
BstF5I GGATG 3 cut(s) 385, 630, 945
BstKTI GATC 8 cut(s) 178, 283, 697, 814, 820, 877, 988, 1203
BstMAI GTCTC 3 cut(s) 176, 331, 612
BstMBI GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
BstMWI GCNNNNNNNGC 1 cut(s) 1214
BstNI CCWGG 3 cut(s) 424, 437, 450
BstNSI RCATGY 1 cut(s) 1226
BstPI GGTNACC 1 cut(s) 625
BstSCI CCNGG 3 cut(s) 422, 435, 448
BstSLI GKGCMC 2 cut(s) 596, 978
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 2 cut(s) 985, 1200
BstYI RGATCY 2 cut(s) 985, 1200
BsuRI GGCC 3 cut(s) 427, 663, 710
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 385, 630, 945
BtsIMutI CAGTG 3 cut(s) 378, 390, 849
CciI TCATGA 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 652
CseI GACGC 3 cut(s) 261, 313, 410
CsiI ACCWGGT 1 cut(s) 435
Csp6I GTAC 4 cut(s) 411, 737, 828, 1045
CspCI CAANNNNNGTGG 2 cut(s) 1066, 1101
CviQI GTAC 4 cut(s) 411, 737, 828, 1045
DdeI CTNAG 4 cut(s) 328, 614, 1062, 1218
DpnI GATC 8 cut(s) 177, 282, 696, 813, 819, 876, 987, 1202
DpnII GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 3 cut(s) 425, 661, 708
Eam1104I CTCTTC 3 cut(s) 35, 75, 506
EarI CTCTTC 3 cut(s) 35, 75, 506
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 2 cut(s) 27, 862
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 147
Eco72I CACGTG 1 cut(s) 597
Eco88I CYCGRG 1 cut(s) 925
Eco91I GGTNACC 1 cut(s) 625
EcoICRI GAGCTC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 625
EcoRII CCWGG 3 cut(s) 422, 435, 448
EcoT14I CCWWGG 1 cut(s) 705
EcoT38I GRGCYC 2 cut(s) 27, 862
ErhI CCWWGG 1 cut(s) 705
Esp3I CGTCTC 3 cut(s) 176, 331, 612
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FbaI TGATCA 1 cut(s) 817
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 3 cut(s) 392, 617, 952
FriOI GRGCYC 2 cut(s) 27, 862
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 1 cut(s) 719
GluI GCNGC 1 cut(s) 648
GsuI CTGGAG 2 cut(s) 200, 471
HaeIII GGCC 3 cut(s) 427, 663, 710
HgaI GACGC 3 cut(s) 261, 313, 410
Hin1I GRCGYC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 2 cut(s) 565, 1002
HphI GGTGA 2 cut(s) 32, 619
Hpy166II GTNNAC 9 cut(s) 209, 229, 594, 737, 830, 945, 955, 976, 1177
Hpy188I TCNGA 3 cut(s) 822, 874, 1205
Hpy188III TCNNGA 8 cut(s) 14, 98, 179, 276, 764, 772, 815, 1061
Hpy8I GTNNAC 9 cut(s) 209, 229, 594, 737, 830, 945, 955, 976, 1177
Hpy99I CGWCG 2 cut(s) 277, 404
HpyAV CCTTC 4 cut(s) 95, 370, 557, 770
HpyCH4III ACNGT 4 cut(s) 20, 72, 394, 949
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 5 cut(s) 4, 65, 199, 594, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 1214
HpyF3I CTNAG 4 cut(s) 328, 614, 1062, 1218
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 2 cut(s) 52, 343
MabI ACCWGGT 1 cut(s) 435
MaeI CTAG 1 cut(s) 719
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 4 cut(s) 360, 388, 625, 1103
MalI GATC 8 cut(s) 177, 282, 696, 813, 819, 876, 987, 1202
MbiI CCGCTC 1 cut(s) 1208
MboI GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
MboII GAAGA 8 cut(s) 49, 52, 92, 496, 523, 554, 787, 977
MflI RGATCY 2 cut(s) 985, 1200
MhlI GDGCHC 5 cut(s) 27, 596, 862, 934, 978
MlsI TGGCCA 2 cut(s) 427, 710
MluCI AATT 5 cut(s) 252, 1036, 1116, 1168, 1243
MluNI TGGCCA 2 cut(s) 427, 710
MlyI GAGTC 1 cut(s) 996
MnlI CCTC 6 cut(s) 36, 124, 127, 885, 1117, 1155
Mox20I TGGCCA 2 cut(s) 427, 710
MroXI GAANNNNTTC 2 cut(s) 546, 608
MscI TGGCCA 2 cut(s) 427, 710
MseI TTAA 7 cut(s) 53, 138, 264, 581, 993, 1149, 1246
MslI CAYNNNNRTG 2 cut(s) 204, 835
Msp20I TGGCCA 2 cut(s) 427, 710
MspA1I CMGCKG 1 cut(s) 286
MspR9I CCNGG 3 cut(s) 424, 437, 450
MvaI CCWGG 3 cut(s) 424, 437, 450
MwoI GCNNNNNNNGC 1 cut(s) 1214
NcoI CCATGG 1 cut(s) 705
NdeII GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
NlaIV GGNNCC 4 cut(s) 153, 462, 915, 987
NmuCI GTSAC 2 cut(s) 388, 625
NspI RCATGY 1 cut(s) 1226
OliI CACNNNNGTG 1 cut(s) 835
PagI TCATGA 1 cut(s) 763
PdmI GAANNNNTTC 2 cut(s) 546, 608
PfeI GAWTC 1 cut(s) 565
PflFI GACNNNGTC 1 cut(s) 623
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 1 cut(s) 996
PmaCI CACGTG 1 cut(s) 597
PmlI CACGTG 1 cut(s) 597
PpsI GAGTC 1 cut(s) 996
Ppu21I YACGTR 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 3 cut(s) 422, 435, 448
PspCI CACGTG 1 cut(s) 597
PspEI GGTNACC 1 cut(s) 625
PspGI CCWGG 3 cut(s) 422, 435, 448
PspN4I GGNNCC 4 cut(s) 153, 462, 915, 987
PspPI GGNCC 1 cut(s) 652
PsuI RGATCY 2 cut(s) 985, 1200
PsyI GACNNNGTC 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 4 cut(s) 412, 738, 829, 1046
RsaNI GTAC 4 cut(s) 411, 737, 828, 1045
RseI CAYNNNNRTG 2 cut(s) 204, 835
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 7 cut(s) 53, 138, 264, 581, 993, 1149, 1246
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 8 cut(s) 175, 280, 694, 811, 817, 874, 985, 1200
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 1 cut(s) 996
ScrFI CCNGG 3 cut(s) 424, 437, 450
SduI GDGCHC 5 cut(s) 27, 596, 862, 934, 978
SexAI ACCWGGT 1 cut(s) 435
SfaNI GCATC 2 cut(s) 52, 343
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 2 cut(s) 204, 835
Sse9I AATT 5 cut(s) 252, 1036, 1116, 1168, 1243
SsiI CCGC 3 cut(s) 194, 650, 1208
SspMI CTAG 1 cut(s) 719
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 3 cut(s) 422, 435, 448
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 4 cut(s) 20, 72, 394, 949
TaiI ACGT 1 cut(s) 599
TaqI TCGA 5 cut(s) 129, 275, 337, 810, 1005
TaqII GACCGA 1 cut(s) 852
TasI AATT 5 cut(s) 252, 1036, 1116, 1168, 1243
TatI WGTACW 2 cut(s) 736, 1044
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 7 cut(s) 53, 138, 264, 581, 993, 1149, 1246
Tru9I TTAA 7 cut(s) 53, 138, 264, 581, 993, 1149, 1246
TscAI CASTG 3 cut(s) 378, 397, 856
TseFI GTSAC 2 cut(s) 388, 625
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 2 cut(s) 388, 625
TspDTI ATGAA 9 cut(s) 105, 555, 752, 780, 970, 978, 1039, 1084, 1124
TspRI CASTG 3 cut(s) 378, 397, 856
Tth111I GACNNNGTC 1 cut(s) 623
VneI GTGCAC 2 cut(s) 592, 974
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 1 cut(s) 1168
XceI RCATGY 1 cut(s) 1226
XmnI GAANNNNTTC 2 cut(s) 546, 608
XspI CTAG 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.