Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004094

Physical Location & Seq

Genomic Coordinates Reverse (-)

19949844 .. 19959562

Gene Structure 9719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1211000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3411 bp

ATGGCTGGGATTTCTAGTGAAGAGTCTGGACCAGGAAGGTCTACAGAGGGGATTTCAAGTGGGCAGCGTTGTCTCTCTGGGGAAGCCTTAGCAGAATGGCGGTCCTCTGAGCAGGTGGAAAATGGAACCCCATCTACTTCGCCCCCTTATTGGGACTCTGATGACGACGACGACGGTGGGCCAAAGCCATCAGAGTTATATGGAAAATATACGTGGAAGATAGAGAAGTTTTCTCAAATTAACAAAAGGGAACTTCGTAGTAATGCTTTTGAGGTTGGCGGCTACAAGTGGTATATCTTGATCTATCCCCAGGGTTGTGATGTTTGCAACCATCTCTCTTTGTTTCTTTGTGTAGCTAATCATGACAAACTTCTTCCAGGTTGGAGCCATTTTGCTCAGTTTACTATAGCTGTGGTAAATAAAGACCCTAAGAAGTCGAAATATTCTGATACATTACATCGCTTTTGGAAGAAAGAGCACGACTGGGGATGGAAAAAATTCATGGAGCTGTCAAAAGTATTAGATGGGTTTATTGATGCTGACACTCTTATAATAAAGGCGCAAGTCCAAGTCATCAGGGAGAAAGCAGACCGGCCCTTTCGCTGCCTTGATTGTCAATATAGGAGAGAACTTGTTAGGGTATACTTGACAAATGTAGAGCAAATTTGCCGTCGTTTTGTGGAAGAGAAAAGAAGTAAACTTGGAAAGTTGATAGAGGATAAAGCTAGATGGTCAAGCTTCTGCTCCTTCTGGGTGGGAATTGAACAAAATGCTAGGCGTCGTATGTCAAGGGAGAAGATGGATGCAGTCCTGAAAGTAGTTGTTAAGCACTTTTTTATTGAGAAAGAAGTCACATCTACGTTGGTAATGGACTCATTGTATAGTGGTTTAAAGGCTCTTGAAGGCCAAACTAAGTCCAAGAAAAGTAAGGTGAAACTATTGGATACTGAAGAAGTGCGAGCGCCAATTGTTCGTGTAGAGAAAGATATGTTTGTATTGGTGGATGATGTTCTGATGCTACTTGAGAGGGCTGCCTTGGAACCATTACCTCCAAAAGATGAGAAGGGTCCTCAAAATCGTACGAAAGATGGAAATTCTGGAGATGACTTCAACAAAGATTCTATTGAGCGGGATGAAAGGCGTCTTACGGAATTGGGTCGTAGGACTGTAGAAATATTTGTCCTTGCTCATATTTTCAGCAACAAAATTGAAGTTGCTTATCATGAATCTGTTGCATTGAAGAGGCAAGAGGAACTCATCCGTGAGGAAGAAGCAGCATGGCAGGCTGAAAGTGAGCAGAAGGCAAAGCGAGGAGCTACTGAAAAGGAAAAGAAGACAAAGAAAAAACAGGCTAAACAGAAAAAGAACAACCGGAAGGGTAAGGACAAAGGGAGGGAGGAAAGGCCCGATGTAGTAGCACAAGAGAAACAAGAACACCCTACTGAAGAAATGAAAGACTACACACGGGATGAAGAACAACCTGTACTTGAAAAGCCAGATACGCTGGAAGATGTATCTGATGTGTCTGATTCAGTGGATGGTGTTGCTGAAGTACCTCCGCTTGATTCTGAAGACAGAGATGCTGGTCCAATAAATTGGGATACCGACACATCAGAAGTCCATCCTCCCACAGAAGCTAGTAGCAGTGGTATTACTGGACTGTCATCCTTGCAAAACGGAGTAACTGAAATAAAGAGTCAATCTGTGATGGATGATAGTTCCTCAACATGTTCTACAGATTCTGTCCCATCAGTGGTAATGAATGGGTCATATAAGGGGAACTCATTATCTAGCTACAAAAACCAGAAATCTCCTAGCAGGGGGAAACACCAACTCCCCAAGGCAATAAGTGATGGGAACAGTTGGCCAAATGAGACGGAAAGTCAGCCTTCTGGGCCTGTAGCGGATGCAGGATATCGGAACGATGCTTCTGGAAGTAGTAGTAAGGTGGGTGCATTTGAGTCAGAGCCTGCTGTTCACTCATTGCAGGATCGGATTAAATGGCTGGAGCAACATGTTGTTAAGAAGGAGGAAGAAGTTGTATCTCTGCAGAAAAAATTGAGTATCAATGATGGGGTTGATTTAGAAAGACCCTTGAAAGACAAGACACCAGCAGTAACATCCTCTCCTGGAAGCCCTTCTAAAGATGTGCCCCTGAATGGTCCACCAAAGTCAGAGAGCCAGAGTAGTGCTGTTGTAGAATCTATTCCACTTAGAAAAGGATCCTCAATTGGTGCACAACAGACTGAGAGAGTGGTACCTTTGACTACTTCACCGCAGAATAATGGCATGTCCAAACCTCATACTCAGAAGCCTACTACTCCAAAACCAGCTGAAAAAGCCATGGCACAGCAAATGCCTGTGATGTCTAGGCCTTCCAGTGCTCCTCTTGTTCCTGGTCCGAGGCCTACTTCTACTGTTGTGCCTACAGTTCAAGCTCAAACTGCTCCTCAGCTTGCCCGTTCAGTAAGTGCAGTGGGCCGGTTGGGGCCTGATCCATCGCCAGCAACTCATAGTTATGTTCCCCAGTCTTATAGAAATGCCATACTAGGTAACCATGTTGCTTCAGGTTCAACTGGTCTCGCACATACTAACTCCCCAAGTTCGGGAGTGAGCCCATCCCCAGTATACTCTCAGTCACCAGCCTTGGTATCTGCTCCAATGTTCTTACCTCGGAGCTCTGATATGATGGACCCAAGCCCAGTTAAGTCAGGCTTCCCGTTTGGCATGGTGACGCGGGATGTGTTGCATAATGGACCCCAGTGGATGGATAATTGTCAACGGGAATCAAGCAAAGGCATGAACTATGATCCCTCCTCCTTGCTTAATGATCAAAATTTCGACTACTTCCATCCTTTACATGGTGGGCAAAGGGAACACTTGTCTACTGAGTTCCCAGCCTGTACATCTGGGCGCCAAACCCAAGGTGTATCGGCAGATGAGTTCCCACACCTTGATATCATCAATGATCTGCTTGATGATGAACATGGCTTTGGTGCAGCTAGAGGAAGCTCTGCCTTTCACTCCGGTAATGGGCCAAGTCACTTAAATCGGCAGTTTTCTTACCCTGGCGATTTGGGCATATCTAATGACATGGGATCTGCAACCAGCTCGTGTAGGTTTGAGAGAACACGGAGTTACCAAGATGATGGGTACCAGAGGGGCTACACATTAGGGGGCCATTTCGAACCACTTAGGGAATTTACTCCGCAAGCTGGTTCGCTACCTTATGTGAATGGGCCAATTGATGGGTTAGTTCCAAACCAGTGGGCAATGGCTGGTTCTGATCTATCTCAACTTGGCATGAGGAACACAGGACCTGATGGTTACCCATACTACAATCCAGAATATTCGAATATGGCATGCAGGGCGAATGGTTACACTGTATTCCGGCCTTCTAAACAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0061919 GO:0071840 GO:0071944 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

1137

Amino Acids

125.85

Weight (kDa)

6.13

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	69 - 189	2.6e-33	MATH domain
MATH	PF00917	74 - 191	7.5e-22	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT5G43560 AT5G43560 AT5G52330 AT5G52330 AT5G52330 AT5G52330
fragaria_vesca	FvH4_4g02970 FvH4_4g02970
malus_domestica	MD13G1209100.v1.1 MD16G1211000.v1.1
prunus_persica	Prupe.1G033200_v2.0.a1 Prupe.1G033200_v2.0.a1
pyrus_communis	pycom13g18110 pycom13g18140 pycom16g17710
rosa_chinensis	RchiOBHm_Chr4g0391041
rosa_laevigata	RLG00000009900
rosa_multiflora	Rmu_sc0001824.1_g000032
rosa_roxburghii	Rroxscaffold_5G00336880
rosa_rugosa	Rorug03G0333900 Rorug03G0333900 Rorug03G0334000
rosa_samantha	Rh4AG034400 Rh4BG029300 Rh4CG038100 Rh4DG031700
rosa_wichuraiana	Rw4G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	103
Acc36I	ACCTGC	1 cut(s)	103
Acc65I	GGTACC	2 cut(s)	2257, 3153
AccB1I	GGYRCC	3 cut(s)	2257, 2913, 3153
AccB7I	CCANNNNNTGG	2 cut(s)	2767, 3248
AccBSI	CCGCTC	1 cut(s)	1129
AccI	GTMKAC	4 cut(s)	41, 642, 2628, 2885
AccII	CGCG	1 cut(s)	2737
AciI	CCGC	8 cut(s)	100, 279, 1129, 1559, 1904, 2276, 2737, 3209
AclWI	GGATC	6 cut(s)	1998, 2217, 2230, 2489, 2804, 3106
AcoI	YGGCCR	1 cut(s)	1865
AcsI	RAATTY	5 cut(s)	497, 663, 1093, 2836, 3200
AcuI	CTGAAG	5 cut(s)	969, 1464, 1569, 1590, 2550
AcyI	GRCGYC	3 cut(s)	778, 1141, 2914
AfaI	GTAC	6 cut(s)	1081, 1485, 1554, 2259, 2905, 3155
AflIII	ACRYGT	2 cut(s)	1727, 2014
AhdI	GACNNNNNGTC	1 cut(s)	1881
AjnI	CCWGG	6 cut(s)	31, 309, 376, 2128, 2395, 3067
AjuI	GAANNNNNNNTTGG	2 cut(s)	2976, 3008
Alw21I	GWGCWC	4 cut(s)	480, 2239, 2386, 2681
Alw26I	GTCTC	3 cut(s)	77, 1868, 2585
Alw44I	GTGCAC	1 cut(s)	2235
AlwI	GGATC	6 cut(s)	1998, 2217, 2230, 2489, 2804, 3106
AlwNI	CAGNNNCTG	3 cut(s)	1742, 1970, 3320
ApaLI	GTGCAC	1 cut(s)	2235
ApeKI	GCWGC	5 cut(s)	64, 603, 1031, 1274, 2999
ApoI	RAATTY	5 cut(s)	497, 663, 1093, 2836, 3200
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
Asp700I	GAANNNNTTC	3 cut(s)	497, 2137, 2205
Asp718I	GGTACC	2 cut(s)	2257, 3153
AspLEI	GCGC	3 cut(s)	562, 964, 2916
AsuHPI	GGTGA	4 cut(s)	943, 2265, 2631, 2743
AsuII	TTCGAA	2 cut(s)	3186, 3353
AvaII	GGWCC	9 cut(s)	29, 102, 1067, 1586, 2162, 2399, 2692, 2756, 3317
BaeGI	GKGCMC	2 cut(s)	2154, 2239
BalI	TGGCCA	1 cut(s)	1867
BamHI	GGATCC	1 cut(s)	2222
BanI	GGYRCC	3 cut(s)	2257, 2913, 3153
BanII	GRGCYC	2 cut(s)	2618, 2681
BauI	CACGAG	1 cut(s)	3112
BbsI	GAAGAC	2 cut(s)	1340, 1578
Bbv12I	GWGCWC	4 cut(s)	480, 2239, 2386, 2681
BbvCI	CCTCAGC	1 cut(s)	2451
BbvI	GCAGC	5 cut(s)	76, 590, 1018, 1286, 3011
BceAI	ACGGC	1 cut(s)	654
BcgI	CGANNNNNNTGC	2 cut(s)	3093, 3127
BciT130I	CCWGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
BciVI	GTATCC	2 cut(s)	937, 1594
BclI	TGATCA	1 cut(s)	2830
BcoDI	GTCTC	3 cut(s)	77, 1868, 2585
BfaI	CTAG	9 cut(s)	15, 726, 774, 1638, 1791, 1815, 2370, 2549, 3003
BfmI	CTRYAG	7 cut(s)	42, 405, 1167, 1734, 1899, 2048, 2427
BfoI	RGCGCY	2 cut(s)	965, 2917
BfuAI	ACCTGC	1 cut(s)	103
BfuI	GTATCC	2 cut(s)	937, 1594
BglI	GCCNNNNNGGC	1 cut(s)	1894
BisI	GCNGC	6 cut(s)	65, 280, 604, 1032, 1275, 3000
BlsI	GCNGC	6 cut(s)	66, 281, 605, 1033, 1276, 3001
Bme1390I	CCNGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
Bme18I	GGWCC	9 cut(s)	29, 102, 1067, 1586, 2162, 2399, 2692, 2756, 3317
BmeRI	GACNNNNNGTC	1 cut(s)	1881
BmrFI	CCNGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
BmrI	ACTGGG	5 cut(s)	493, 2521, 2618, 2696, 2755
BmsI	GCATC	6 cut(s)	526, 793, 1005, 1570, 1897, 1915
BmuI	ACTGGG	5 cut(s)	493, 2521, 2618, 2696, 2755
BpiI	GAAGAC	2 cut(s)	1340, 1578
BpmI	CTGGAG	2 cut(s)	1119, 2027
Bpu10I	CCTNAGC	2 cut(s)	88, 2451
Bpu14I	TTCGAA	2 cut(s)	3186, 3353
BpuEI	CTTGAG	1 cut(s)	1043
BsaAI	YACGTR	1 cut(s)	213
BsaHI	GRCGYC	3 cut(s)	778, 1141, 2914
BsaI	GGTCTC	1 cut(s)	2585
BsaWI	WCCGGW	2 cut(s)	1371, 3026
BsaXI	ACNNNNNCTCC	4 cut(s)	1818, 1848, 2110, 2140
Bse118I	RCCGGY	2 cut(s)	591, 2481
Bse1I	ACTGG	9 cut(s)	488, 1660, 2379, 2527, 2581, 2624, 2702, 2761, 3265
Bse3DI	GCAATG	2 cut(s)	1982, 3279
BseBI	CCWGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
BseMI	GCAATG	2 cut(s)	1982, 3279
BseMII	CTCAG	7 cut(s)	99, 410, 2238, 2321, 2465, 2648, 2880
BseNI	ACTGG	9 cut(s)	488, 1660, 2379, 2527, 2581, 2624, 2702, 2761, 3265
BseRI	GAGGAG	4 cut(s)	1326, 2376, 2439, 2806
BseSI	GKGCMC	2 cut(s)	2154, 2239
BseXI	GCAGC	5 cut(s)	76, 590, 1018, 1286, 3011
BseYI	CCCAGC	2 cut(s)	5, 2896
BsgI	GTGCAG	2 cut(s)	2493, 3018
Bsh1236I	CGCG	1 cut(s)	2737
BshNI	GGYRCC	3 cut(s)	2257, 2913, 3153
BsiHKAI	GWGCWC	4 cut(s)	480, 2239, 2386, 2681
BsiSI	CCGG	5 cut(s)	592, 1372, 2482, 3027, 3391
BsiWI	CGTACG	1 cut(s)	1079
BslFI	GGGAC	2 cut(s)	167, 1730
BsmAI	GTCTC	3 cut(s)	77, 1868, 2585
BsmBI	CGTCTC	1 cut(s)	1868
BsmFI	GGGAC	2 cut(s)	167, 1730
Bso31I	GGTCTC	1 cut(s)	2585
Bsp119I	TTCGAA	2 cut(s)	3186, 3353
Bsp1286I	GDGCHC	6 cut(s)	480, 2154, 2239, 2386, 2618, 2681
Bsp1407I	TGTACA	1 cut(s)	2903
Bsp143I	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
Bsp19I	CCATGG	1 cut(s)	2343
BspACI	CCGC	8 cut(s)	100, 279, 1129, 1559, 1904, 2276, 2737, 3209
BspCNI	CTCAG	7 cut(s)	100, 409, 2239, 2320, 2464, 2647, 2881
BspFNI	CGCG	1 cut(s)	2737
BspHI	TCATGA	2 cut(s)	361, 1222
BspMAI	CTGCAG	1 cut(s)	2052
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	6 cut(s)	1998, 2217, 2230, 2489, 2804, 3106
BspT104I	TTCGAA	2 cut(s)	3186, 3353
BspT107I	GGYRCC	3 cut(s)	2257, 2913, 3153
BspTNI	GGTCTC	1 cut(s)	2585
BsrBI	CCGCTC	1 cut(s)	1129
BsrDI	GCAATG	2 cut(s)	1982, 3279
BsrFI	RCCGGY	2 cut(s)	591, 2481
BsrGI	TGTACA	1 cut(s)	2903
BsrI	ACTGG	9 cut(s)	488, 1660, 2379, 2527, 2581, 2624, 2702, 2761, 3265
BssAI	RCCGGY	2 cut(s)	591, 2481
BssMI	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
BssNAI	GTATAC	2 cut(s)	643, 2629
BssNI	GRCGYC	3 cut(s)	778, 1141, 2914
BssSI	CACGAG	1 cut(s)	3112
BssT1I	CCWWGG	5 cut(s)	1035, 1839, 2343, 2646, 2923
Bst1107I	GTATAC	2 cut(s)	643, 2629
Bst2BI	CACGAG	1 cut(s)	3112
Bst2UI	CCWGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
Bst4CI	ACNGT	8 cut(s)	176, 1168, 1662, 1862, 2419, 2431, 3385, 3408
Bst6I	CTCTTC	3 cut(s)	15, 678, 1235
BstACI	GRCGYC	3 cut(s)	778, 1141, 2914
BstAUI	TGTACA	1 cut(s)	2903
BstBAI	YACGTR	1 cut(s)	213
BstBI	TTCGAA	2 cut(s)	3186, 3353
BstC8I	GCNNGC	7 cut(s)	960, 1284, 1971, 2457, 2505, 3213, 3364
BstDSI	CCRYGG	1 cut(s)	2343
BstEII	GGTNACC	2 cut(s)	2552, 3326
BstFNI	CGCG	1 cut(s)	2737
BstH2I	RGCGCY	2 cut(s)	965, 2917
BstHHI	GCGC	3 cut(s)	562, 964, 2916
BstKTI	GATC	9 cut(s)	303, 1993, 2225, 2497, 2812, 2833, 2971, 3101, 3289
BstMAI	GTCTC	3 cut(s)	77, 1868, 2585
BstMBI	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
BstMWI	GCNNNNNNNGC	7 cut(s)	1283, 1501, 1894, 2339, 2444, 3078, 3368
BstNI	CCWGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
BstNSI	RCATGY	4 cut(s)	1731, 2018, 2293, 3366
BstPI	GGTNACC	2 cut(s)	2552, 3326
BstSCI	CCNGG	6 cut(s)	31, 309, 376, 2128, 2395, 3067
BstSFI	CTRYAG	7 cut(s)	42, 405, 1167, 1734, 1899, 2048, 2427
BstSLI	GKGCMC	2 cut(s)	2154, 2239
BstUI	CGCG	1 cut(s)	2737
BstV1I	GCAGC	5 cut(s)	76, 590, 1018, 1286, 3011
BstV2I	GAAGAC	2 cut(s)	1340, 1578
BstX2I	RGATCY	2 cut(s)	2222, 3098
BstXI	CCANNNNNNTGG	3 cut(s)	1596, 3149, 3267
BstYI	RGATCY	2 cut(s)	2222, 3098
BstZ17I	GTATAC	2 cut(s)	643, 2629
BsuI	GTATCC	2 cut(s)	937, 1594
BtgI	CCRYGG	1 cut(s)	2343
BtgZI	GCGATG	2 cut(s)	443, 2484
BtsI	GCAGTG	2 cut(s)	1651, 2481
BtsIMutI	CAGTG	8 cut(s)	1539, 1651, 1758, 2386, 2481, 2768, 3272, 3381
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	7 cut(s)	960, 1284, 1971, 2457, 2505, 3213, 3364
CaiI	CAGNNNCTG	3 cut(s)	1742, 1970, 3320
CciI	TCATGA	2 cut(s)	361, 1222
CfoI	GCGC	3 cut(s)	562, 964, 2916
Cfr10I	RCCGGY	2 cut(s)	591, 2481
CseI	GACGC	3 cut(s)	767, 1130, 2743
Csp6I	GTAC	6 cut(s)	1080, 1484, 1553, 2258, 2904, 3154
CviQI	GTAC	6 cut(s)	1080, 1484, 1553, 2258, 2904, 3154
DinI	GGCGCC	1 cut(s)	2915
DpnI	GATC	9 cut(s)	302, 1992, 2224, 2496, 2811, 2832, 2970, 3100, 3288
DpnII	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
DraI	TTTAAA	1 cut(s)	891
DriI	GACNNNNNGTC	1 cut(s)	1881
EaeI	YGGCCR	1 cut(s)	1865
Eam1104I	CTCTTC	3 cut(s)	15, 678, 1235
Eam1105I	GACNNNNNGTC	1 cut(s)	1881
EarI	CTCTTC	3 cut(s)	15, 678, 1235
Ecl136II	GAGCTC	1 cut(s)	2679
Eco130I	CCWWGG	5 cut(s)	1035, 1839, 2343, 2646, 2923
Eco147I	AGGCCT	2 cut(s)	2374, 2407
Eco24I	GRGCYC	2 cut(s)	2618, 2681
Eco31I	GGTCTC	1 cut(s)	2585
Eco32I	GATATC	2 cut(s)	1916, 2959
Eco47I	GGWCC	9 cut(s)	29, 102, 1067, 1586, 2162, 2399, 2692, 2756, 3317
Eco53kI	GAGCTC	1 cut(s)	2679
Eco57I	CTGAAG	5 cut(s)	969, 1464, 1569, 1590, 2550
Eco91I	GGTNACC	2 cut(s)	2552, 3326
EcoICRI	GAGCTC	1 cut(s)	2679
EcoO109I	RGGNCCY	3 cut(s)	1067, 2489, 3317
EcoO65I	GGTNACC	2 cut(s)	2552, 3326
EcoRII	CCWGG	6 cut(s)	31, 309, 376, 2128, 2395, 3067
EcoRV	GATATC	2 cut(s)	1916, 2959
EcoT14I	CCWWGG	5 cut(s)	1035, 1839, 2343, 2646, 2923
EcoT38I	GRGCYC	2 cut(s)	2618, 2681
EgeI	GGCGCC	1 cut(s)	2915
EheI	GGCGCC	1 cut(s)	2915
ErhI	CCWWGG	5 cut(s)	1035, 1839, 2343, 2646, 2923
Esp3I	CGTCTC	1 cut(s)	1868
FalI	AAGNNNNNCTT	4 cut(s)	1873, 1905, 2699, 2731
FaqI	GGGAC	2 cut(s)	167, 1730
FauI	CCCGC	2 cut(s)	1122, 2730
FbaI	TGATCA	1 cut(s)	2830
FblI	GTMKAC	4 cut(s)	41, 642, 2628, 2885
Fnu4HI	GCNGC	6 cut(s)	65, 280, 604, 1032, 1275, 3000
FriOI	GRGCYC	2 cut(s)	2618, 2681
Fsp4HI	GCNGC	6 cut(s)	65, 280, 604, 1032, 1275, 3000
FspBI	CTAG	9 cut(s)	15, 726, 774, 1638, 1791, 1815, 2370, 2549, 3003
GlaI	GCGC	3 cut(s)	561, 963, 2915
GluI	GCNGC	6 cut(s)	65, 280, 604, 1032, 1275, 3000
GsaI	CCCAGC	2 cut(s)	9, 2900
GsuI	CTGGAG	2 cut(s)	1119, 2027
HaeII	RGCGCY	2 cut(s)	965, 2917
HapII	CCGG	5 cut(s)	592, 1372, 2482, 3027, 3391
HgaI	GACGC	3 cut(s)	767, 1130, 2743
HhaI	GCGC	3 cut(s)	562, 964, 2916
Hin1I	GRCGYC	3 cut(s)	778, 1141, 2914
Hin6I	GCGC	3 cut(s)	560, 962, 2914
HinP1I	GCGC	3 cut(s)	560, 962, 2914
HincII	GTYRAC	1 cut(s)	2780
HindII	GTYRAC	1 cut(s)	2780
HindIII	AAGCTT	1 cut(s)	736
HpaII	CCGG	5 cut(s)	592, 1372, 2482, 3027, 3391
HphI	GGTGA	4 cut(s)	943, 2265, 2631, 2743
Hpy99I	CGWCG	5 cut(s)	170, 173, 176, 675, 783
HpyCH4III	ACNGT	8 cut(s)	176, 1168, 1662, 1862, 2419, 2431, 3385, 3408
HpyCH4IV	ACGT	2 cut(s)	212, 860
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1283, 1501, 1894, 2339, 2444, 3078, 3368
HpySE526I	ACGT	2 cut(s)	212, 860
Hsp92I	GRCGYC	3 cut(s)	778, 1141, 2914
HspAI	GCGC	3 cut(s)	560, 962, 2914
KasI	GGCGCC	1 cut(s)	2913
KpnI	GGTACC	2 cut(s)	2261, 3157
Ksp22I	TGATCA	1 cut(s)	2830
Kzo9I	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
LmnI	GCTCC	9 cut(s)	384, 505, 749, 1313, 2008, 2389, 2452, 2662, 2676
Lsp1109I	GCAGC	5 cut(s)	76, 590, 1018, 1286, 3011
LweI	GCATC	6 cut(s)	526, 793, 1005, 1570, 1897, 1915
MaeI	CTAG	9 cut(s)	15, 726, 774, 1638, 1791, 1815, 2370, 2549, 3003
MaeII	ACGT	2 cut(s)	212, 860
MalI	GATC	9 cut(s)	302, 1992, 2224, 2496, 2811, 2832, 2970, 3100, 3288
MbiI	CCGCTC	1 cut(s)	1129
MboI	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
MfeI	CAATTG	3 cut(s)	966, 2229, 3243
MflI	RGATCY	2 cut(s)	2222, 3098
MhlI	GDGCHC	6 cut(s)	480, 2154, 2239, 2386, 2618, 2681
MlsI	TGGCCA	1 cut(s)	1867
MluNI	TGGCCA	1 cut(s)	1867
Mly113I	GGCGCC	1 cut(s)	2914
MlyI	GAGTC	5 cut(s)	32, 149, 866, 1705, 1970
MmeI	TCCRAC	1 cut(s)	362
Mox20I	TGGCCA	1 cut(s)	1867
MroXI	GAANNNNTTC	3 cut(s)	497, 2137, 2205
MscI	TGGCCA	1 cut(s)	1867
MseI	TTAA	8 cut(s)	240, 825, 890, 1998, 2022, 2706, 2826, 3047
MslI	CAYNNNNRTG	1 cut(s)	2517
Msp20I	TGGCCA	1 cut(s)	1867
MspA1I	CMGCKG	1 cut(s)	2333
MspI	CCGG	5 cut(s)	592, 1372, 2482, 3027, 3391
MspR9I	CCNGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
MunI	CAATTG	3 cut(s)	966, 2229, 3243
MvaI	CCWGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
MvnI	CGCG	1 cut(s)	2737
MwoI	GCNNNNNNNGC	7 cut(s)	1283, 1501, 1894, 2339, 2444, 3078, 3368
NarI	GGCGCC	1 cut(s)	2914
NcoI	CCATGG	1 cut(s)	2343
NdeII	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
NmuCI	GTSAC	4 cut(s)	850, 2637, 2731, 3041
NspI	RCATGY	4 cut(s)	1731, 2018, 2293, 3366
NspV	TTCGAA	2 cut(s)	3186, 3353
PaeI	GCATGC	1 cut(s)	3366
PagI	TCATGA	2 cut(s)	361, 1222
PaqCI	CACCTGC	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	310
PceI	AGGCCT	2 cut(s)	2374, 2407
PciI	ACATGT	2 cut(s)	1727, 2014
PdmI	GAANNNNTTC	3 cut(s)	497, 2137, 2205
PfeI	GAWTC	7 cut(s)	1118, 1226, 1529, 1565, 1739, 2201, 2786
Pfl23II	CGTACG	1 cut(s)	1079
PflMI	CCANNNNNTGG	2 cut(s)	2767, 3248
PfoI	TCCNGGA	1 cut(s)	2128
PkrI	GCNGC	6 cut(s)	66, 281, 605, 1033, 1276, 3001
PleI	GAGTC	5 cut(s)	31, 149, 866, 1704, 1969
PluTI	GGCGCC	1 cut(s)	2917
PpsI	GAGTC	5 cut(s)	31, 149, 866, 1704, 1969
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	2 cut(s)	1067, 3317
PscI	ACATGT	2 cut(s)	1727, 2014
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	2681
Psp5II	RGGWCCY	2 cut(s)	1067, 3317
Psp6I	CCWGG	6 cut(s)	31, 309, 376, 2128, 2395, 3067
PspEI	GGTNACC	2 cut(s)	2552, 3326
PspFI	CCCAGC	2 cut(s)	5, 2896
PspGI	CCWGG	6 cut(s)	31, 309, 376, 2128, 2395, 3067
PspLI	CGTACG	1 cut(s)	1079
PspPPI	RGGWCCY	2 cut(s)	1067, 3317
PsrI	GAACNNNNNNTAC	4 cut(s)	118, 150, 1467, 1499
PstI	CTGCAG	1 cut(s)	2052
PstNI	CAGNNNCTG	3 cut(s)	1742, 1970, 3320
PsuI	RGATCY	2 cut(s)	2222, 3098
PvuII	CAGCTG	1 cut(s)	2333
RsaI	GTAC	6 cut(s)	1081, 1485, 1554, 2259, 2905, 3155
RsaNI	GTAC	6 cut(s)	1080, 1484, 1553, 2258, 2904, 3154
RseI	CAYNNNNRTG	1 cut(s)	2517
SacI	GAGCTC	1 cut(s)	2681
SaqAI	TTAA	8 cut(s)	240, 825, 890, 1998, 2022, 2706, 2826, 3047
SatI	GCNGC	6 cut(s)	65, 280, 604, 1032, 1275, 3000
Sau3AI	GATC	9 cut(s)	300, 1990, 2222, 2494, 2809, 2830, 2968, 3098, 3286
SchI	GAGTC	5 cut(s)	32, 149, 866, 1705, 1970
ScrFI	CCNGG	6 cut(s)	33, 311, 378, 2130, 2397, 3069
SduI	GDGCHC	6 cut(s)	480, 2154, 2239, 2386, 2618, 2681
SfaNI	GCATC	6 cut(s)	526, 793, 1005, 1570, 1897, 1915
SfcI	CTRYAG	7 cut(s)	42, 405, 1167, 1734, 1899, 2048, 2427
SfoI	GGCGCC	1 cut(s)	2915
SfuI	TTCGAA	2 cut(s)	3186, 3353
SinI	GGWCC	9 cut(s)	29, 102, 1067, 1586, 2162, 2399, 2692, 2756, 3317
SmiMI	CAYNNNNRTG	1 cut(s)	2517
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SphI	GCATGC	1 cut(s)	3366
SseBI	AGGCCT	2 cut(s)	2374, 2407
SsiI	CCGC	8 cut(s)	100, 279, 1129, 1559, 1904, 2276, 2737, 3209
SspDI	GGCGCC	1 cut(s)	2913
SspI	AATATT	3 cut(s)	443, 1176, 3350
SspMI	CTAG	9 cut(s)	15, 726, 774, 1638, 1791, 1815, 2370, 2549, 3003
SstI	GAGCTC	1 cut(s)	2681
StuI	AGGCCT	2 cut(s)	2374, 2407
StyD4I	CCNGG	6 cut(s)	31, 309, 376, 2128, 2395, 3067
StyI	CCWWGG	5 cut(s)	1035, 1839, 2343, 2646, 2923
TaaI	ACNGT	8 cut(s)	176, 1168, 1662, 1862, 2419, 2431, 3385, 3408
TaiI	ACGT	2 cut(s)	215, 863
TaqI	TCGA	4 cut(s)	437, 2841, 3186, 3353
TatI	WGTACW	2 cut(s)	1483, 2903
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	7 cut(s)	1118, 1226, 1529, 1565, 1739, 2201, 2786
Tru1I	TTAA	8 cut(s)	240, 825, 890, 1998, 2022, 2706, 2826, 3047
Tru9I	TTAA	8 cut(s)	240, 825, 890, 1998, 2022, 2706, 2826, 3047
TscAI	CASTG	8 cut(s)	1539, 1651, 1758, 2386, 2481, 2768, 3272, 3388
TseFI	GTSAC	4 cut(s)	850, 2637, 2731, 3041
TseI	GCWGC	5 cut(s)	64, 603, 1031, 1274, 2999
Tsp45I	GTSAC	4 cut(s)	850, 2637, 2731, 3041
TspDTI	ATGAA	8 cut(s)	490, 1149, 1239, 1466, 1485, 1775, 2816, 2997
TspGWI	ACGGA	5 cut(s)	1163, 1250, 1692, 1892, 3148
TspRI	CASTG	8 cut(s)	1539, 1651, 1758, 2386, 2481, 2768, 3272, 3388
Van91I	CCANNNNNTGG	2 cut(s)	2767, 3248
VneI	GTGCAC	1 cut(s)	2235
VpaK11BI	GGWCC	9 cut(s)	29, 102, 1067, 1586, 2162, 2399, 2692, 2756, 3317
XapI	RAATTY	5 cut(s)	497, 663, 1093, 2836, 3200
XceI	RCATGY	4 cut(s)	1731, 2018, 2293, 3366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2858
XmiI	GTMKAC	4 cut(s)	41, 642, 2628, 2885
XmnI	GAANNNNTTC	3 cut(s)	497, 2137, 2205
XspI	CTAG	9 cut(s)	15, 726, 774, 1638, 1791, 1815, 2370, 2549, 3003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.