Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004094

Physical Location & Seq

Genomic Coordinates Reverse (-)

5141326 .. 5148847

Gene Structure 7522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3411 bp

ATGGCTGGGGTTTCTAGTGAGGATTCTGGGGTAGGAAGGTCTACAGAGGGGATTTCAAGTGGGCAGCGTTGCCTCTCTGGGGAGGCATTAGCAGAGTGGCGGTCATCTGAGCAGGTGGAAAATGGAACCCCATCTACTTCTCCCCCTTATTGGGATTCTGATGACGATGATGATGGTGGGCCAAAACCGTCCGAGCTATATGGAAAATATACCTGGAAGATTGAGAAATTTTCTCAGATTAACAAAAGGGAACTTCGTAGTAATGCATTTGAGGTTGGCGGTTACAAATGGTACATTTTAATCTACCCCCAAGGTTGCGATGTCTGCAATCATCTCTCCTTGTTTCTCTGTGTAGCTAATCATGACAAACTTCTTCCAGGTTGGAGTCATTTTGCGCAGTTTACCATAGCTGTGGTGAATAAAGATCCCAAGAAGTCAAAATACTCAGACACATTACATCGGTTTTGGAAGAAAGAGCATGACTGGGGGTGGAAAAAATTTATGGAGCTTTCAAAAGTACTAGATGGGTTTATTGATGCTGACACTCTTATAATAAAGGCTCAAGTTCAAGTTATCAGAGAGAAAGCAGACCGGCCGTTTCGCTGCCTTGATTGTCAATATAGGAGAGAACTTGTTAGGGTATATTTGACAAATGTAGAGCAAATTTGCCGTCGTTTTGTGGAAGAGAGGAGAAGCAAACTTGGAAAGTTGATAGATGATAAAGCTAGATGGTCAAGCTTCTGCTCGTTCTGGTTGGGAATTGAACAAAATGCTAGGCGCCGTATGTCCAGGGAAAAGATGGATGCAGTTCTGAAAGTAGTGGTTAAGCACTTTTTTATTGAAAAAGAAGTCACATCTACGTTGGTAATGGATTCATTGTATAGTGGTTTAAAGGCTCTTGAAGGCCAAACTAAGTGCAAGAAAAGTAAGCTGAAATTATTGGAAGCTGAGGAAAGTCCAGCACCAATTGTTCGTGTGGAGAAAGATATGTTTGTATTGGTGGATGATGTCTTAAAGCTACTTGAGAGGGCTGCCGTTGAACCTTTACCTCCAAAAGATGAGAAGGGTCCTCAAAATCGTACTAAAGATGGAAATTCTGGAGAGGACTTCAATAAAGATTCGATTGAGCGAGATGAAAGACGTCTTACGGAATTGGGTCGTAGGACTGTGGAAATATTTGTCCTTGCTCATATTTTCAGCAATAAAATTGAAGTTGCCTATCATGAATCTGTTGCATTGAAGAGGCAAGAGGAGCTCATTCGTGAGGAAGAAGCAGCATGGCAGGCGGAGACTGACCAGAAGGCAAAACGTGGAGCAACTGAGAAGGAAAAGAAGTCGAAGAAAAAACAGGCTAAACAGAAAAGGAATAACCGGAAGGGGAAGGACAAAGGGAGGGAAGAAAGGCCGGGCGTAGCAATAGCAGAGAAACAACAGGAACTCCCTATTGATGAACTAAAAGACTACACGAGGGATGAGGAGCAACCTGTGGTTGAAAAGGCAGATACTGTGGAAGATGTATCTGACGTGTCTGATTCAGCGGATGGTGTTGCTGAAGTACCTCAACCTGATTCTGAAGACAGAGATGCTAGTCCAGTCAATTGGGATACCGATACTTCAGAAATCCATCCTCCCACAGGACCCAGTAGCAGTGGAATCAGTGGTCTCTCATCCGTGCAAAATGGCGTATCAGAGAAAAAGAGCCCATCTGTGATGGATGATAGTTCCTCAACGTGTTCTACTGATTCAGTGCCATCAGTGGTAATGAATGGGCCATATAAAGGAAACTCCTTTTCTAATTACAAAACTCAAAAATCGCCTAGCAGGGGAAAACAGCAACGGGGTAAGGCAGCAGCTGATGGGAATAGTTGGCCAAATGAGTTGGATAATCAACCTTCCGGACCTGTTGCAGATGCGGGGAATCAGAATGATGTCTCTGGAAGTAGTAAGGTGGGTGAACCTGAGTCTGAGCCAGTTGTTCACTCATTGCAGGATCGGATTAAGTGGCTGGAGCAGCATGTGGTTAAGAAGGAGGAAGAGGTTGTTTCACTGCAGAAAAAATTGAGCATCAAAGATCAGGTTGATGTAGAAAGACCTATGAAAGAGAAGACACCAGCAGTGACATCTTCTCCTGAAAGCCCTTCTAAAAATGTGTCATTGACTGGTCGACCCAAGTTGGAGTGCCAGAGTAGTACCGTTACAGATTCTATTCCTCTTAAGAGAGCAACCTCAATCAGCATACAACAGACTGATAGAGTGGCTCCTTCGACTGTGTCATCCCAGAGTAATGGCATGTCCAATACTGATACTCAAAAGGCCGCTACTGCAAGACCAGCTGAAAAAGCCATGGCACAACAAGTACCGGTGGTGTCCAGGCCCTCCAGTGCACCTCTCGTTCCTGGTCCCAGGCCGCCAACGTCTACTGTTGTTTCAATGGTTCAAACATCTCCTCTGCTTGCCCGTTCGGTGAGTGCTGCTGGTCGACTAGGTCCTGATCCATCGCCAGCAACTCATAGTTATGTTCCCCAGTCATATAGAAATGCCATACTTGGTAACCATGTCCCGTCGGGATCAACTGGTTTCACACATACCAATTCCCACAGCTCAACAGTGAAACCATCTCCATCATACTCCCAACCACCAGCCTTGGTATCGACCCCTATGTTCATACCCCAGAGTCCTGAAGTGATGGATACAAACACAGTTAACTCAGGCTTCCCATTTGGCATGGTAACTCGGGATGTGCTGCATAATGGACCACAGTGGATGGAGAGTTCGCAAAGGGAATCAAGCAAAGGCATGAACTATGATCATTCGTCCTTGCTTAATGATCAAAGTTTTGATTTCTACCAGCCTTTGCATGGTGGGCAACGTGAACAGTTCTCCACTGAGTTGCCAGCTTGCACATCTGGTCGCCAGACCCAAGGTGTATCAGCAGATGACTTCCCCCACATTGACATCATCAATGATCTGCTGGATGATGAACATGGCTTTGGGGGAGCTATAGCAAGTTCAGTTTTTCACTCCTTCAACAATGGGCCGAACCATTTAACTCGCCAATTTTCTTATCCCGGTGATTTGGGCACATCTAGCGACATGGAATCTGCAACCAGCTCTTGTAGGTTTGAGAGAACACGGAGTTACCAAGATGATGGGTTCCAGAGGGGCTACACGTTAGGGGGCCATTTCGAATCACTTAGAGAATTTACTCCGCAAGCTGGTGCTCTACCGTATGTGAACGGGCAGATTGATGGGTTAATTCCTAACCAGTGGCAGATGGCTGGTTCAGATCTATCTTTACAAGGCATGAGGAATACTGAAAATGATGGTTACCCGTACTACAATCCAGATTATTCAAATATGGCATGTGGGGTGAACGGTTACACTGTATTCCGGCCTTCAAATGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0061919 GO:0071840 GO:0071944 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

1136

Amino Acids

125.96

Weight (kDa)

5.87

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	69 - 189	2.6e-33	MATH domain
MATH	PF00917	74 - 191	7.5e-22	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT5G43560 AT5G43560 AT5G52330 AT5G52330 AT5G52330 AT5G52330
fragaria_vesca	FvH4_4g02970 FvH4_4g02970
malus_domestica	MD13G1209100.v1.1 MD16G1211000.v1.1
prunus_persica	Prupe.1G033200_v2.0.a1 Prupe.1G033200_v2.0.a1
pyrus_communis	pycom13g18110 pycom13g18140 pycom16g17710
rosa_chinensis	RchiOBHm_Chr4g0391041
rosa_laevigata	RLG00000009900
rosa_multiflora	Rmu_sc0001824.1_g000032
rosa_roxburghii	Rroxscaffold_5G00336880
rosa_rugosa	Rorug03G0333900 Rorug03G0333900 Rorug03G0334000
rosa_samantha	Rh4AG034400 Rh4BG029300 Rh4CG038100 Rh4DG031700
rosa_wichuraiana	Rw4G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	103
AatII	GACGTC	1 cut(s)	1144
Acc16I	TGCGCA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	777
AccI	GTMKAC	4 cut(s)	41, 2164, 2417, 2479
AccIII	TCCGGA	1 cut(s)	1895
AciI	CCGC	8 cut(s)	100, 279, 1286, 1538, 1913, 2316, 2408, 3209
AclWI	GGATC	4 cut(s)	419, 1998, 2486, 2575
AcoI	YGGCCR	2 cut(s)	593, 1868
AcsI	RAATTY	5 cut(s)	227, 497, 663, 1093, 3200
AcuI	CTGAAG	4 cut(s)	1572, 1593, 1599, 2700
AcyI	GRCGYC	2 cut(s)	778, 1141
AfaI	GTAC	7 cut(s)	293, 519, 1081, 1557, 2191, 2358, 3335
AfiI	CCNNNNNNNGG	9 cut(s)	79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
AflII	CTTAAG	1 cut(s)	2213
AflIII	ACRYGT	3 cut(s)	1524, 1730, 3168
AgeI	ACCGGT	1 cut(s)	2359
AjiI	CACGTC	1 cut(s)	1525
AjnI	CCWGG	6 cut(s)	212, 376, 788, 2369, 2395, 2402
AjuI	GAANNNNNNNTTGG	2 cut(s)	2973, 3005
AloI	GAACNNNNNNTCC	2 cut(s)	2755, 2787
Alw21I	GWGCWC	3 cut(s)	1257, 2386, 3223
Alw26I	GTCTC	3 cut(s)	1283, 1667, 1936
Alw44I	GTGCAC	1 cut(s)	2382
AlwI	GGATC	4 cut(s)	419, 1998, 2486, 2575
AlwNI	CAGNNNCTG	2 cut(s)	1505, 1853
Ama87I	CYCGRG	1 cut(s)	2733
Aor13HI	TCCGGA	1 cut(s)	1895
ApaLI	GTGCAC	1 cut(s)	2382
ApeKI	GCWGC	9 cut(s)	64, 603, 1031, 1274, 1847, 1850, 2011, 2471, 2743
ApoI	RAATTY	5 cut(s)	227, 497, 663, 1093, 3200
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
AsiGI	ACCGGT	1 cut(s)	2359
AspLEI	GCGC	2 cut(s)	397, 780
AsuC2I	CCSGG	2 cut(s)	1407, 3069
AsuHPI	GGTGA	5 cut(s)	427, 1964, 2476, 3083, 3382
AsuII	TTCGAA	1 cut(s)	3186
AvaI	CYCGRG	1 cut(s)	2733
AvaII	GGWCC	6 cut(s)	1067, 1637, 1898, 2399, 2486, 2753
BaeGI	GKGCMC	2 cut(s)	2386, 3083
BalI	TGGCCA	1 cut(s)	1870
BanI	GGYRCC	1 cut(s)	777
BanII	GRGCYC	2 cut(s)	1257, 1703
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BauI	CACGAG	1 cut(s)	1465
BbsI	GAAGAC	2 cut(s)	1581, 2111
Bbv12I	GWGCWC	3 cut(s)	1257, 2386, 3223
BbvCI	CCTCAGC	1 cut(s)	948
BbvI	GCAGC	9 cut(s)	76, 590, 1018, 1286, 1859, 1862, 2023, 2458, 2730
BceAI	ACGGC	4 cut(s)	580, 654, 765, 1019
BciT130I	CCWGG	6 cut(s)	214, 378, 790, 2371, 2397, 2404
BciVI	GTATCC	2 cut(s)	1597, 2683
BclI	TGATCA	2 cut(s)	2806, 2827
BcnI	CCSGG	2 cut(s)	1407, 3069
BcoDI	GTCTC	3 cut(s)	1283, 1667, 1936
BfaI	CTAG	8 cut(s)	15, 521, 726, 774, 1587, 1818, 2483, 3087
BfmI	CTRYAG	3 cut(s)	42, 2048, 3000
BfoI	RGCGCY	1 cut(s)	781
BfrI	CTTAAG	1 cut(s)	2213
BfuAI	ACCTGC	1 cut(s)	103
BfuI	GTATCC	2 cut(s)	1597, 2683
BglII	AGATCT	1 cut(s)	3286
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	8 cut(s)	214, 378, 790, 1407, 2371, 2397, 2404, 3069
Bme18I	GGWCC	6 cut(s)	1067, 1637, 1898, 2399, 2486, 2753
BmeT110I	CYCGRG	1 cut(s)	2733
BmgBI	CACGTC	1 cut(s)	1525
BmiI	GGNNCC	8 cut(s)	127, 779, 1068, 1639, 2259, 2401, 3155, 3179
BmrFI	CCNGG	8 cut(s)	214, 378, 790, 1407, 2371, 2397, 2404, 3069
BmrI	ACTGGG	3 cut(s)	493, 1635, 2518
BmsI	GCATC	5 cut(s)	526, 793, 1573, 1900, 2073
BmuI	ACTGGG	3 cut(s)	493, 1635, 2518
BpiI	GAAGAC	2 cut(s)	1581, 2111
BpmI	CTGGAG	3 cut(s)	1119, 2027, 2362
Bpu10I	CCTNAGC	1 cut(s)	948
Bpu14I	TTCGAA	1 cut(s)	3186
BpuEI	CTTGAG	2 cut(s)	546, 1043
BpuMI	CCSGG	2 cut(s)	1407, 3069
BsaHI	GRCGYC	2 cut(s)	778, 1141
BsaI	GGTCTC	1 cut(s)	1667
BsaJI	CCNNGG	6 cut(s)	310, 789, 2343, 2402, 2643, 2920
BsaWI	WCCGGW	3 cut(s)	1371, 1895, 2359
BsaXI	ACNNNNNCTCC	4 cut(s)	1422, 1452, 2110, 2140
Bsc4I	CCNNNNNNNGG	9 cut(s)	79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
Bse118I	RCCGGY	2 cut(s)	591, 2359
Bse1I	ACTGG	9 cut(s)	488, 1592, 1641, 1970, 2164, 2379, 2524, 2578, 3265
Bse3DI	GCAATG	1 cut(s)	1982
BseAI	TCCGGA	1 cut(s)	1895
BseBI	CCWGG	6 cut(s)	214, 378, 790, 2371, 2397, 2404
BseDI	CCNNGG	6 cut(s)	310, 789, 2343, 2402, 2643, 2920
BseLI	CCNNNNNNNGG	9 cut(s)	79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
BseMI	GCAATG	1 cut(s)	1982
BseMII	CTCAG	9 cut(s)	99, 248, 459, 939, 1311, 1950, 1956, 2721, 2877
BseNI	ACTGG	9 cut(s)	488, 1592, 1641, 1970, 2164, 2379, 2524, 2578, 3265
BseRI	GAGGAG	4 cut(s)	703, 1265, 1490, 2436
BseSI	GKGCMC	2 cut(s)	2386, 3083
BseX3I	CGGCCG	1 cut(s)	593
BseXI	GCAGC	9 cut(s)	76, 590, 1018, 1286, 1859, 1862, 2023, 2458, 2730
BseYI	CCCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	596
BshNI	GGYRCC	1 cut(s)	777
BshTI	ACCGGT	1 cut(s)	2359
BsiEI	CGRYCG	1 cut(s)	596
BsiHKAI	GWGCWC	3 cut(s)	1257, 2386, 3223
BsiHKCI	CYCGRG	1 cut(s)	2733
BsiSI	CCGG	7 cut(s)	592, 1372, 1406, 1896, 2360, 3069, 3391
BslFI	GGGAC	2 cut(s)	2385, 2543
BslI	CCNNNNNNNGG	9 cut(s)	79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
BsmAI	GTCTC	3 cut(s)	1283, 1667, 1936
BsmFI	GGGAC	2 cut(s)	2385, 2543
Bso31I	GGTCTC	1 cut(s)	1667
BsoBI	CYCGRG	1 cut(s)	2733
Bsp119I	TTCGAA	1 cut(s)	3186
Bsp1286I	GDGCHC	5 cut(s)	1257, 1703, 2386, 3083, 3223
Bsp13I	TCCGGA	1 cut(s)	1895
Bsp143I	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
Bsp19I	CCATGG	1 cut(s)	2343
BspACI	CCGC	8 cut(s)	100, 279, 1286, 1538, 1913, 2316, 2408, 3209
BspCNI	CTCAG	9 cut(s)	100, 247, 458, 940, 1312, 1951, 1957, 2720, 2878
BspEI	TCCGGA	1 cut(s)	1895
BspHI	TCATGA	2 cut(s)	361, 1222
BspLI	GGNNCC	8 cut(s)	127, 779, 1068, 1639, 2259, 2401, 3155, 3179
BspMAI	CTGCAG	1 cut(s)	2052
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	4 cut(s)	419, 1998, 2486, 2575
BspT104I	TTCGAA	1 cut(s)	3186
BspT107I	GGYRCC	1 cut(s)	777
BspTI	CTTAAG	1 cut(s)	2213
BspTNI	GGTCTC	1 cut(s)	1667
BsrDI	GCAATG	1 cut(s)	1982
BsrFI	RCCGGY	2 cut(s)	591, 2359
BsrI	ACTGG	9 cut(s)	488, 1592, 1641, 1970, 2164, 2379, 2524, 2578, 3265
BssAI	RCCGGY	2 cut(s)	591, 2359
BssECI	CCNNGG	6 cut(s)	310, 789, 2343, 2402, 2643, 2920
BssMI	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
BssNI	GRCGYC	2 cut(s)	778, 1141
BssSI	CACGAG	1 cut(s)	1465
BssT1I	CCWWGG	4 cut(s)	310, 2343, 2643, 2920
Bst2BI	CACGAG	1 cut(s)	1465
Bst2UI	CCWGG	6 cut(s)	214, 378, 790, 2371, 2397, 2404
Bst6I	CTCTTC	3 cut(s)	678, 1235, 2028
BstACI	GRCGYC	2 cut(s)	778, 1141
BstAFI	CTTAAG	1 cut(s)	2213
BstBI	TTCGAA	1 cut(s)	3186
BstC8I	GCNNGC	6 cut(s)	1284, 2454, 2502, 2895, 2899, 3213
BstDSI	CCRYGG	1 cut(s)	2343
BstEII	GGTNACC	2 cut(s)	2549, 3326
BstENI	CCTNNNNNAGG	1 cut(s)	1632
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	2 cut(s)	397, 780
BstKTI	GATC	9 cut(s)	427, 1993, 2074, 2494, 2570, 2809, 2830, 2968, 3289
BstMAI	GTCTC	3 cut(s)	1283, 1667, 1936
BstMBI	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
BstMCI	CGRYCG	1 cut(s)	596
BstMWI	GCNNNNNNNGC	9 cut(s)	324, 1252, 1283, 2011, 2321, 2330, 2339, 2863, 3087
BstNI	CCWGG	6 cut(s)	214, 378, 790, 2371, 2397, 2404
BstNSI	RCATGY	3 cut(s)	2018, 2293, 3366
BstPI	GGTNACC	2 cut(s)	2549, 3326
BstSCI	CCNGG	8 cut(s)	212, 376, 788, 1405, 2369, 2395, 2402, 3067
BstSFI	CTRYAG	3 cut(s)	42, 2048, 3000
BstSLI	GKGCMC	2 cut(s)	2386, 3083
BstV1I	GCAGC	9 cut(s)	76, 590, 1018, 1286, 1859, 1862, 2023, 2458, 2730
BstV2I	GAAGAC	2 cut(s)	1581, 2111
BstX2I	RGATCY	2 cut(s)	424, 3286
BstXI	CCANNNNNNTGG	4 cut(s)	412, 1599, 2285, 3149
BstYI	RGATCY	2 cut(s)	424, 3286
BstZI	CGGCCG	1 cut(s)	593
BsuI	GTATCC	2 cut(s)	1597, 2683
BtgI	CCRYGG	1 cut(s)	2343
BtgZI	GCGATG	2 cut(s)	333, 2481
BtrI	CACGTC	1 cut(s)	1525
BtsI	GCAGTG	3 cut(s)	1654, 2045, 2121
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	6 cut(s)	1284, 2454, 2502, 2895, 2899, 3213
CaiI	CAGNNNCTG	2 cut(s)	1505, 1853
CciI	TCATGA	2 cut(s)	361, 1222
CfoI	GCGC	2 cut(s)	397, 780
Cfr10I	RCCGGY	2 cut(s)	591, 2359
Csp6I	GTAC	7 cut(s)	292, 518, 1080, 1556, 2190, 2357, 3334
CspAI	ACCGGT	1 cut(s)	2359
CspCI	CAANNNNNGTGG	2 cut(s)	2625, 2660
CviQI	GTAC	7 cut(s)	292, 518, 1080, 1556, 2190, 2357, 3334
DinI	GGCGCC	1 cut(s)	779
DpnI	GATC	9 cut(s)	426, 1992, 2073, 2493, 2569, 2808, 2829, 2967, 3288
DpnII	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
DraI	TTTAAA	1 cut(s)	891
EaeI	YGGCCR	2 cut(s)	593, 1868
EagI	CGGCCG	1 cut(s)	593
Eam1104I	CTCTTC	3 cut(s)	678, 1235, 2028
EarI	CTCTTC	3 cut(s)	678, 1235, 2028
EciI	GGCGGA	1 cut(s)	1301
Ecl136II	GAGCTC	1 cut(s)	1255
EclXI	CGGCCG	1 cut(s)	593
Eco130I	CCWWGG	4 cut(s)	310, 2343, 2643, 2920
Eco24I	GRGCYC	2 cut(s)	1257, 1703
Eco31I	GGTCTC	1 cut(s)	1667
Eco47I	GGWCC	6 cut(s)	1067, 1637, 1898, 2399, 2486, 2753
Eco52I	CGGCCG	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	1255
Eco57I	CTGAAG	4 cut(s)	1572, 1593, 1599, 2700
Eco88I	CYCGRG	1 cut(s)	2733
Eco91I	GGTNACC	2 cut(s)	2549, 3326
EcoICRI	GAGCTC	1 cut(s)	1255
EcoNI	CCTNNNNNAGG	1 cut(s)	1632
EcoO109I	RGGNCCY	4 cut(s)	1067, 1637, 2373, 2486
EcoO65I	GGTNACC	2 cut(s)	2549, 3326
EcoRII	CCWGG	6 cut(s)	212, 376, 788, 2369, 2395, 2402
EcoT14I	CCWWGG	4 cut(s)	310, 2343, 2643, 2920
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	2 cut(s)	1257, 1703
EgeI	GGCGCC	1 cut(s)	779
EheI	GGCGCC	1 cut(s)	779
ErhI	CCWWGG	4 cut(s)	310, 2343, 2643, 2920
FaqI	GGGAC	2 cut(s)	2385, 2543
FauI	CCCGC	1 cut(s)	1906
FbaI	TGATCA	2 cut(s)	2806, 2827
FblI	GTMKAC	4 cut(s)	41, 2164, 2417, 2479
FriOI	GRGCYC	2 cut(s)	1257, 1703
FspBI	CTAG	8 cut(s)	15, 521, 726, 774, 1587, 1818, 2483, 3087
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	2 cut(s)	396, 779
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	3 cut(s)	1119, 2027, 2362
HaeII	RGCGCY	1 cut(s)	781
HapII	CCGG	7 cut(s)	592, 1372, 1406, 1896, 2360, 3069, 3391
HhaI	GCGC	2 cut(s)	397, 780
Hin1I	GRCGYC	2 cut(s)	778, 1141
Hin6I	GCGC	2 cut(s)	395, 778
HinP1I	GCGC	2 cut(s)	395, 778
HincII	GTYRAC	3 cut(s)	2165, 2480, 2704
HindII	GTYRAC	3 cut(s)	2165, 2480, 2704
HindIII	AAGCTT	1 cut(s)	736
HpaI	GTTAAC	1 cut(s)	2704
HpaII	CCGG	7 cut(s)	592, 1372, 1406, 1896, 2360, 3069, 3391
HphI	GGTGA	5 cut(s)	427, 1964, 2476, 3083, 3382
Hpy99I	CGWCG	2 cut(s)	675, 2566
HpyCH4IV	ACGT	8 cut(s)	860, 1141, 1309, 1524, 1730, 2414, 2869, 3170
HpyF10VI	GCNNNNNNNGC	9 cut(s)	324, 1252, 1283, 2011, 2321, 2330, 2339, 2863, 3087
HpySE526I	ACGT	8 cut(s)	860, 1141, 1309, 1524, 1730, 2414, 2869, 3170
Hsp92I	GRCGYC	2 cut(s)	778, 1141
HspAI	GCGC	2 cut(s)	395, 778
KasI	GGCGCC	1 cut(s)	777
Kpn2I	TCCGGA	1 cut(s)	1895
Ksp22I	TGATCA	2 cut(s)	2806, 2827
KspAI	GTTAAC	1 cut(s)	2704
Kzo9I	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
LmnI	GCTCC	7 cut(s)	505, 1252, 1313, 1477, 2008, 2263, 2996
Lsp1109I	GCAGC	9 cut(s)	76, 590, 1018, 1286, 1859, 1862, 2023, 2458, 2730
LweI	GCATC	5 cut(s)	526, 793, 1573, 1900, 2073
MaeI	CTAG	8 cut(s)	15, 521, 726, 774, 1587, 1818, 2483, 3087
MaeII	ACGT	8 cut(s)	860, 1141, 1309, 1524, 1730, 2414, 2869, 3170
MaeIII	GTNAC	9 cut(s)	281, 850, 2116, 2194, 2549, 2728, 3137, 3326, 3377
MalI	GATC	9 cut(s)	426, 1992, 2073, 2493, 2569, 2808, 2829, 2967, 3288
MboI	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
MfeI	CAATTG	2 cut(s)	966, 1597
MflI	RGATCY	2 cut(s)	424, 3286
MhlI	GDGCHC	5 cut(s)	1257, 1703, 2386, 3083, 3223
MlsI	TGGCCA	1 cut(s)	1870
MluNI	TGGCCA	1 cut(s)	1870
Mly113I	GGCGCC	1 cut(s)	778
MlyI	GAGTC	3 cut(s)	394, 1970, 2683
MmeI	TCCRAC	3 cut(s)	362, 1860, 2154
Mox20I	TGGCCA	1 cut(s)	1870
Mph1103I	ATGCAT	1 cut(s)	268
MroI	TCCGGA	1 cut(s)	1895
MscI	TGGCCA	1 cut(s)	1870
MslI	CAYNNNNRTG	2 cut(s)	410, 2514
Msp20I	TGGCCA	1 cut(s)	1870
MspA1I	CMGCKG	3 cut(s)	1538, 1853, 2333
MspCI	CTTAAG	1 cut(s)	2213
MspI	CCGG	7 cut(s)	592, 1372, 1406, 1896, 2360, 3069, 3391
MspR9I	CCNGG	8 cut(s)	214, 378, 790, 1407, 2371, 2397, 2404, 3069
MunI	CAATTG	2 cut(s)	966, 1597
MvaI	CCWGG	6 cut(s)	214, 378, 790, 2371, 2397, 2404
MwoI	GCNNNNNNNGC	9 cut(s)	324, 1252, 1283, 2011, 2321, 2330, 2339, 2863, 3087
NarI	GGCGCC	1 cut(s)	778
NciI	CCSGG	2 cut(s)	1407, 3069
NcoI	CCATGG	1 cut(s)	2343
NdeII	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
NlaIV	GGNNCC	8 cut(s)	127, 779, 1068, 1639, 2259, 2401, 3155, 3179
NmuCI	GTSAC	2 cut(s)	850, 2116
NsbI	TGCGCA	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	3 cut(s)	2018, 2293, 3366
NspV	TTCGAA	1 cut(s)	3186
PagI	TCATGA	2 cut(s)	361, 1222
PaqCI	CACCTGC	1 cut(s)	103
PflFI	GACNNNGTC	2 cut(s)	2269, 2484
PinAI	ACCGGT	1 cut(s)	2359
PleI	GAGTC	3 cut(s)	393, 1969, 2682
PluTI	GGCGCC	1 cut(s)	781
PpsI	GAGTC	3 cut(s)	393, 1969, 2682
PpuMI	RGGWCCY	3 cut(s)	1067, 1637, 2486
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	1257
Psp5II	RGGWCCY	3 cut(s)	1067, 1637, 2486
Psp6I	CCWGG	6 cut(s)	212, 376, 788, 2369, 2395, 2402
PspEI	GGTNACC	2 cut(s)	2549, 3326
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	6 cut(s)	212, 376, 788, 2369, 2395, 2402
PspN4I	GGNNCC	8 cut(s)	127, 779, 1068, 1639, 2259, 2401, 3155, 3179
PspPPI	RGGWCCY	3 cut(s)	1067, 1637, 2486
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PstI	CTGCAG	1 cut(s)	2052
PstNI	CAGNNNCTG	2 cut(s)	1505, 1853
PsuI	RGATCY	2 cut(s)	424, 3286
PsyI	GACNNNGTC	2 cut(s)	2269, 2484
PvuII	CAGCTG	2 cut(s)	1853, 2333
RsaI	GTAC	7 cut(s)	293, 519, 1081, 1557, 2191, 2358, 3335
RsaNI	GTAC	7 cut(s)	292, 518, 1080, 1556, 2190, 2357, 3334
RseI	CAYNNNNRTG	2 cut(s)	410, 2514
SacI	GAGCTC	1 cut(s)	1257
SalI	GTCGAC	2 cut(s)	2163, 2478
Sau3AI	GATC	9 cut(s)	424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
ScaI	AGTACT	1 cut(s)	519
SchI	GAGTC	3 cut(s)	394, 1970, 2683
ScrFI	CCNGG	8 cut(s)	214, 378, 790, 1407, 2371, 2397, 2404, 3069
SduI	GDGCHC	5 cut(s)	1257, 1703, 2386, 3083, 3223
SfaNI	GCATC	5 cut(s)	526, 793, 1573, 1900, 2073
SfcI	CTRYAG	3 cut(s)	42, 2048, 3000
SfoI	GGCGCC	1 cut(s)	779
SfuI	TTCGAA	1 cut(s)	3186
SinI	GGWCC	6 cut(s)	1067, 1637, 1898, 2399, 2486, 2753
SmiMI	CAYNNNNRTG	2 cut(s)	410, 2514
SmlI	CTYRAG	3 cut(s)	561, 1022, 2213
SmoI	CTYRAG	3 cut(s)	561, 1022, 2213
SsiI	CCGC	8 cut(s)	100, 279, 1286, 1538, 1913, 2316, 2408, 3209
SspDI	GGCGCC	1 cut(s)	777
SspI	AATATT	1 cut(s)	1176
SspMI	CTAG	8 cut(s)	15, 521, 726, 774, 1587, 1818, 2483, 3087
SstI	GAGCTC	1 cut(s)	1257
StyD4I	CCNGG	8 cut(s)	212, 376, 788, 1405, 2369, 2395, 2402, 3067
StyI	CCWWGG	4 cut(s)	310, 2343, 2643, 2920
TaiI	ACGT	8 cut(s)	863, 1144, 1312, 1527, 1733, 2417, 2872, 3173
TaqI	TCGA	7 cut(s)	1121, 1337, 2164, 2264, 2479, 2651, 3186
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	2 cut(s)	2318, 2410
TseFI	GTSAC	2 cut(s)	850, 2116
TseI	GCWGC	9 cut(s)	64, 603, 1031, 1274, 1847, 1850, 2011, 2471, 2743
Tsp45I	GTSAC	2 cut(s)	850, 2116
TspDTI	ATGAA	9 cut(s)	864, 1149, 1239, 1464, 1778, 2111, 2653, 2813, 2994
TspGWI	ACGGA	3 cut(s)	1163, 1660, 3148
Tth111I	GACNNNGTC	2 cut(s)	2269, 2484
Vha464I	CTTAAG	1 cut(s)	2213
VneI	GTGCAC	1 cut(s)	2382
VpaK11BI	GGWCC	6 cut(s)	1067, 1637, 1898, 2399, 2486, 2753
XagI	CCTNNNNNAGG	1 cut(s)	1632
XapI	RAATTY	5 cut(s)	227, 497, 663, 1093, 3200
XceI	RCATGY	3 cut(s)	2018, 2293, 3366
XcmI	CCANNNNNNNNNTGG	2 cut(s)	796, 2855
XmiI	GTMKAC	4 cut(s)	41, 2164, 2417, 2479
XspI	CTAG	8 cut(s)	15, 521, 726, 774, 1587, 1818, 2483, 3087
ZraI	GACGTC	1 cut(s)	1142
ZrmI	AGTACT	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.