Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004094

Physical Location & Seq

Genomic Coordinates Forward (+)

59834267 .. 59838706

Gene Structure 4440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCTGGGGTTTCTAGTGAGGATTCTGGAGTAGGAAGGTCTACAGAGGGGATTTCAAGTGGGCAGCGTTGCCTCTCTGGGGAGGCATTAGCAGAGTGGCGGTCATCTGAGCAGGTGGAAAATGGAACCCCATCTACTTCTCCCCCTTATTGGGATTCTGATGATGATGACGATGGTGGGCCAAAACCATCCGAGCTATATGGAAAATATACCTGGAAGATTGAGAAATTTTCTCAGATTAACAAAAGGGAACTTCGTAGTAATGCATTTGAGGTTGGCGGCTACAAATGGTACATTTTAATCTACCCCCAAGGTTGCGATGTCTGCAATCATCTCTCCTTGTTTCTCTGTGTAGCTAATCATGACAAACTTCTTCCAGGTTGGAGTCATTTTGCGCAGTTTACCATAGCTGTGGTGAATAAAGATCCCAAGAAGTCAAAATACTCAGATACATTACATCGGTTTTGGAAGAAAGAGCATGACTGGGGGTGGAAAAAATTTATGGAGCTTTCAAAAGTACTAGATGGGTTTATTGATGCTGACACTCTTATAATAAAAGCTCAAGTTCAAGTTATCAGAGAGAAAGCAGACCGGCCGTTTCGCTGCCTTGATTGTCAATATAGGAGAGAACTTGTTAGGGTATACTTGACAAATGTAGAGCAAATTTGCCGTCGTTTTGTGGAAGAGAGGAGAAGCAAACTTGGAAAGTTGATAGATGATAAAGCTAGATGGTCAAGCTTCTGCTCGTTCTGGTTGGGAATTGAACAAAATGCTAGGCGCCGTATGTCCAGGGAAAAGATGGATGCAGTTCTAAAAGTAGTGGTTAAGCACTTTTTTATTGAAAAAGAAGTCACATCTACGTTGGTAATGGATTCGTTGTATAGTGGTTTAAAGGCTCTTGAGGGCCAAATTAAGTGCAAGAAAAGTAAGCTGAAGTTATTGGAAGCTGAGGAAAGTCCAGCACCGATTGTTCGTGTGGAGAAAGATATGTTTGTATTGGTGGATGATGTTTTAAAGCTACTTGAGAGGGCTGCCGTTGAACCTTTACCTCCAAAGGATGAGAAGGGTCCTCAAAATCGTACTAAATTAGAAGGGTTGTATTTATTAATGACATCCCAAGTTTTATGCTCTAAACTAACACAGGATATAACATTATATATATATATATATATATATATATATATATATATATATTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0061919 GO:0071840 GO:0071944 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

401

Amino Acids

46.38

Weight (kDa)

8.49

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	69 - 189	5e-34	MATH domain
MATH	PF00917	74 - 191	1.4e-22	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT1G04300 AT5G43560 AT5G43560 AT5G52330 AT5G52330 AT5G52330 AT5G52330
fragaria_vesca	FvH4_4g02970 FvH4_4g02970
malus_domestica	MD13G1209100.v1.1 MD16G1211000.v1.1
prunus_persica	Prupe.1G033200_v2.0.a1 Prupe.1G033200_v2.0.a1
pyrus_communis	pycom13g18110 pycom13g18140 pycom16g17710
rosa_chinensis	RchiOBHm_Chr4g0391041
rosa_laevigata	RLG00000009900
rosa_multiflora	Rmu_sc0001824.1_g000032
rosa_roxburghii	Rroxscaffold_5G00336880
rosa_rugosa	Rorug03G0333900 Rorug03G0333900 Rorug03G0334000
rosa_samantha	Rh4AG034400 Rh4BG029300 Rh4CG038100 Rh4DG031700
rosa_wichuraiana	Rw4G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	103
Acc16I	TGCGCA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	777
AccI	GTMKAC	2 cut(s)	41, 642
AciI	CCGC	2 cut(s)	100, 279
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	593
AcsI	RAATTY	3 cut(s)	227, 497, 663
AcuI	CTGAAG	1 cut(s)	953
AcyI	GRCGYC	1 cut(s)	778
AfaI	GTAC	3 cut(s)	293, 519, 1081
AfiI	CCNNNNNNNGG	3 cut(s)	79, 150, 151
AgsI	TTSAA	6 cut(s)	57, 513, 569, 764, 842, 1040
AjnI	CCWGG	3 cut(s)	212, 376, 788
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	3 cut(s)	179, 593, 904
ApeKI	GCWGC	3 cut(s)	64, 603, 1031
ApoI	RAATTY	3 cut(s)	227, 497, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
AseI	ATTAAT	1 cut(s)	1106
AspLEI	GCGC	2 cut(s)	397, 780
AspS9I	GGNCC	3 cut(s)	179, 904, 1067
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	1067
BanI	GGYRCC	1 cut(s)	777
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbvCI	CCTCAGC	1 cut(s)	948
BbvI	GCAGC	3 cut(s)	76, 590, 1018
BccI	CCATC	6 cut(s)	139, 167, 196, 518, 723, 793
BceAI	ACGGC	4 cut(s)	580, 654, 765, 1019
BciT130I	CCWGG	3 cut(s)	214, 378, 790
BfaI	CTAG	4 cut(s)	15, 521, 726, 774
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	65, 280, 604, 1032
BlsI	GCNGC	4 cut(s)	66, 281, 605, 1033
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	3 cut(s)	214, 378, 790
Bme18I	GGWCC	1 cut(s)	1067
BmgT120I	GGNCC	3 cut(s)	179, 904, 1067
BmiI	GGNNCC	3 cut(s)	127, 779, 1068
BmrFI	CCNGG	3 cut(s)	214, 378, 790
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	526, 793
BmuI	ACTGGG	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	3 cut(s)	546, 920, 1043
BsaHI	GRCGYC	1 cut(s)	778
BsaJI	CCNNGG	2 cut(s)	310, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 150, 151
Bse118I	RCCGGY	1 cut(s)	591
Bse1I	ACTGG	1 cut(s)	488
BseBI	CCWGG	3 cut(s)	214, 378, 790
BseDI	CCNNGG	2 cut(s)	310, 789
BseGI	GGATG	5 cut(s)	188, 808, 1009, 1063, 1112
BseLI	CCNNNNNNNGG	3 cut(s)	79, 150, 151
BseMII	CTCAG	4 cut(s)	99, 248, 459, 939
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	703
BseX3I	CGGCCG	1 cut(s)	593
BseXI	GCAGC	3 cut(s)	76, 590, 1018
BseYI	CCCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	181, 595, 906
BshNI	GGYRCC	1 cut(s)	777
BsiEI	CGRYCG	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	592
BslI	CCNNNNNNNGG	3 cut(s)	79, 150, 151
BsnI	GGCC	3 cut(s)	181, 595, 906
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	2 cut(s)	100, 279
BspANI	GGCC	3 cut(s)	181, 595, 906
BspCNI	CTCAG	4 cut(s)	100, 247, 458, 940
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	127, 779, 1068
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	591
BssECI	CCNNGG	2 cut(s)	310, 789
BssMI	GATC	1 cut(s)	424
BssNAI	GTATAC	1 cut(s)	643
BssNI	GRCGYC	1 cut(s)	778
BssT1I	CCWWGG	1 cut(s)	310
Bst1107I	GTATAC	1 cut(s)	643
Bst2UI	CCWGG	3 cut(s)	214, 378, 790
Bst6I	CTCTTC	1 cut(s)	678
BstACI	GRCGYC	1 cut(s)	778
BstDEI	CTNAG	4 cut(s)	108, 234, 445, 948
BstF5I	GGATG	5 cut(s)	188, 808, 1009, 1063, 1112
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	2 cut(s)	397, 780
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMCI	CGRYCG	1 cut(s)	596
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	3 cut(s)	214, 378, 790
BstSCI	CCNGG	3 cut(s)	212, 376, 788
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	76, 590, 1018
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	643
BstZI	CGGCCG	1 cut(s)	593
BsuRI	GGCC	3 cut(s)	181, 595, 906
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	5 cut(s)	188, 808, 1009, 1063, 1112
BveI	ACCTGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	2 cut(s)	397, 780
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	3 cut(s)	179, 904, 1067
Csp6I	GTAC	3 cut(s)	292, 518, 1080
CviAII	CATG	2 cut(s)	362, 479
CviQI	GTAC	3 cut(s)	292, 518, 1080
DdeI	CTNAG	4 cut(s)	108, 234, 445, 948
DinI	GGCGCC	1 cut(s)	779
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	2 cut(s)	891, 1014
EaeI	YGGCCR	1 cut(s)	593
EagI	CGGCCG	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
EclXI	CGGCCG	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	1067
Eco52I	CGGCCG	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	953
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoRII	CCWGG	3 cut(s)	212, 376, 788
EcoT14I	CCWWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	268
EgeI	GGCGCC	1 cut(s)	779
EheI	GGCGCC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	2 cut(s)	365, 482
FatI	CATG	2 cut(s)	361, 478
FblI	GTMKAC	2 cut(s)	41, 642
Fnu4HI	GCNGC	4 cut(s)	65, 280, 604, 1032
FokI	GGATG	5 cut(s)	175, 815, 1016, 1070, 1099
Fsp4HI	GCNGC	4 cut(s)	65, 280, 604, 1032
FspBI	CTAG	4 cut(s)	15, 521, 726, 774
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	2 cut(s)	396, 779
GluI	GCNGC	4 cut(s)	65, 280, 604, 1032
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	3 cut(s)	181, 595, 906
HapII	CCGG	1 cut(s)	592
HhaI	GCGC	2 cut(s)	397, 780
Hin1I	GRCGYC	1 cut(s)	778
Hin1II	CATG	2 cut(s)	365, 482
Hin6I	GCGC	2 cut(s)	395, 778
HinP1I	GCGC	2 cut(s)	395, 778
HindIII	AAGCTT	1 cut(s)	736
HinfI	GANTC	4 cut(s)	23, 155, 385, 872
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	3 cut(s)	42, 402, 643
Hpy188I	TCNGA	6 cut(s)	109, 160, 193, 237, 448, 578
Hpy188III	TCNNGA	3 cut(s)	27, 362, 899
Hpy8I	GTNNAC	3 cut(s)	42, 402, 643
Hpy99I	CGWCG	1 cut(s)	675
HpyAV	CCTTC	3 cut(s)	30, 1057, 1085
HpyCH4IV	ACGT	1 cut(s)	860
HpyCH4V	TGCA	4 cut(s)	266, 327, 806, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	4 cut(s)	108, 234, 445, 948
HpySE526I	ACGT	1 cut(s)	860
Hsp92I	GRCGYC	1 cut(s)	778
Hsp92II	CATG	2 cut(s)	365, 482
HspAI	GCGC	2 cut(s)	395, 778
KasI	GGCGCC	1 cut(s)	777
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	3 cut(s)	76, 590, 1018
LweI	GCATC	2 cut(s)	526, 793
MaeI	CTAG	4 cut(s)	15, 521, 726, 774
MaeII	ACGT	1 cut(s)	860
MaeIII	GTNAC	1 cut(s)	850
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	4 cut(s)	229, 365, 481, 695
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	6 cut(s)	227, 497, 663, 759, 909, 1085
Mly113I	GGCGCC	1 cut(s)	778
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	8 cut(s)	240, 299, 825, 890, 912, 1013, 1106, 1201
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	3 cut(s)	214, 378, 790
MvaI	CCWGG	3 cut(s)	214, 378, 790
MwoI	GCNNNNNNNGC	1 cut(s)	324
NarI	GGCGCC	1 cut(s)	778
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	365, 482
NlaIV	GGNNCC	3 cut(s)	127, 779, 1068
NmuCI	GTSAC	1 cut(s)	850
NsbI	TGCGCA	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	268
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	23, 155, 872
PkrI	GCNGC	4 cut(s)	66, 281, 605, 1033
PleI	GAGTC	1 cut(s)	393
PluTI	GGCGCC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	393
PpuMI	RGGWCCY	1 cut(s)	1067
PshBI	ATTAAT	1 cut(s)	1106
PsiI	TTATAA	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	1067
Psp6I	CCWGG	3 cut(s)	212, 376, 788
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	212, 376, 788
PspN4I	GGNNCC	3 cut(s)	127, 779, 1068
PspPI	GGNCC	3 cut(s)	179, 904, 1067
PspPPI	RGGWCCY	1 cut(s)	1067
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	293, 519, 1081
RsaNI	GTAC	3 cut(s)	292, 518, 1080
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	8 cut(s)	240, 299, 825, 890, 912, 1013, 1106, 1201
SatI	GCNGC	4 cut(s)	65, 280, 604, 1032
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	3 cut(s)	179, 904, 1067
ScaI	AGTACT	1 cut(s)	519
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	3 cut(s)	214, 378, 790
SfaNI	GCATC	2 cut(s)	526, 793
SfcI	CTRYAG	1 cut(s)	42
SfoI	GGCGCC	1 cut(s)	779
SinI	GGWCC	1 cut(s)	1067
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	561, 899, 1022
SmoI	CTYRAG	3 cut(s)	561, 899, 1022
Sse9I	AATT	6 cut(s)	227, 497, 663, 759, 909, 1085
SsiI	CCGC	2 cut(s)	100, 279
SspDI	GGCGCC	1 cut(s)	777
SspMI	CTAG	4 cut(s)	15, 521, 726, 774
StyD4I	CCNGG	3 cut(s)	212, 376, 788
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	863
TasI	AATT	6 cut(s)	227, 497, 663, 759, 909, 1085
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	23, 155, 872
Tru1I	TTAA	8 cut(s)	240, 299, 825, 890, 912, 1013, 1106, 1201
Tru9I	TTAA	8 cut(s)	240, 299, 825, 890, 912, 1013, 1106, 1201
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	3 cut(s)	64, 603, 1031
Tsp45I	GTSAC	1 cut(s)	850
VpaK11BI	GGWCC	1 cut(s)	1067
VspI	ATTAAT	1 cut(s)	1106
XapI	RAATTY	3 cut(s)	227, 497, 663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	796
XmiI	GTMKAC	2 cut(s)	41, 642
XspI	CTAG	4 cut(s)	15, 521, 726, 774
ZrmI	AGTACT	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.