AT5G52545

RNA-binding protein 18 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011461
Physical Location & Seq
Reverse (-)
21323781 .. 21325604
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52545.2

Sequence Viewer

Length: 240 bp
ATGCATGGGAGATTAGCTTGTGGTAGGCCTTTAGTGGTGCGTCTAGCTAGTGAGAAGCATCTAGAAGATTCCTCTCATGATCACTCCAAAAGATCATTACCAGAAGGAAACAGAACCAGATTTGTAAACGGGAGCAGCTCAGGACAAATGAGCCGAGACGAAAAAGTAACTGCCATTAAGAACAAACTCAAAGCTTTGGAAGAAGATGAGAAACGTGATCCCAAGAAACAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

79

Amino Acids

8.95

Weight (kDa)

9.84

Isoelectric Point (pI)

68.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 15 - 87 3.4e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 234
AluBI AGCT 4 cut(s) 17, 47, 138, 194
AluI AGCT 4 cut(s) 17, 47, 138, 194
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 234
BbvI GCAGC 1 cut(s) 147
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 3 cut(s) 44, 48, 62
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmsI GCATC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 139
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 3 cut(s) 79, 92, 217
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 76
BspPI GGATC 1 cut(s) 212
BssMI GATC 3 cut(s) 79, 92, 217
BstDEI CTNAG 1 cut(s) 139
BstKTI GATC 3 cut(s) 82, 95, 220
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 79, 92, 217
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 28
CciI TCATGA 1 cut(s) 76
CseI GACGC 1 cut(s) 29
CviAII CATG 2 cut(s) 5, 77
CviJI RGCY 6 cut(s) 17, 28, 47, 138, 153, 194
CviKI_1 RGCY 6 cut(s) 17, 28, 47, 138, 153, 194
DdeI CTNAG 1 cut(s) 139
DpnI GATC 3 cut(s) 81, 94, 219
DpnII GATC 3 cut(s) 79, 92, 217
Eco147I AGGCCT 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 8, 80
FaiI YATR 2 cut(s) 6, 78
FatI CATG 2 cut(s) 4, 76
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 3 cut(s) 44, 48, 62
GluI GCNGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 28
HgaI GACGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 8, 80
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 3 cut(s) 62, 77, 141
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 8, 80
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 79, 92, 217
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 114, 126, 130
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 67
MaeI CTAG 3 cut(s) 44, 48, 62
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 81, 94, 219
MboI GATC 3 cut(s) 79, 92, 217
MboII GAAGA 3 cut(s) 77, 212, 215
MluCI AATT 1 cut(s) 234
MnlI CCTC 1 cut(s) 82
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 177, 238
NdeII GATC 3 cut(s) 79, 92, 217
NlaIII CATG 2 cut(s) 8, 80
NmeAIII GCCGAG 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 76
PceI AGGCCT 1 cut(s) 28
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 177, 238
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 3 cut(s) 79, 92, 217
SetI ASST 5 cut(s) 19, 49, 140, 196, 217
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 28
SspMI CTAG 3 cut(s) 44, 48, 62
StuI AGGCCT 1 cut(s) 28
TaiI ACGT 1 cut(s) 217
TasI AATT 1 cut(s) 234
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 177, 238
Tru9I TTAA 2 cut(s) 177, 238
TseI GCWGC 1 cut(s) 135
XapI RAATTY 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 61
XspI CTAG 3 cut(s) 44, 48, 62
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.