Prupe.2G300100_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011461
Physical Location & Seq
Reverse (-)
28881007 .. 28883442
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G300100.2

Sequence Viewer

Length: 477 bp
ATGGATCCTAATGGTTCTGGTGATGAAAATAGTGAAAGCAAAATCTACATTGGTAACCTTGATCTGAGGATAACGGAGGCTGCTCTAATTAAGATGTTTTCTCCATTTGGGAAGATTGTAACTGAGGACTTTTTGTGGCACACTCGTGGCCGAAAACGTGGAGAGCCACGGGGTTTTGCTTTCATCCAGTATAGCAGCAAAGAGGAAGCAAAATTGGCCAAGGAGAAGATGCATGGGAGACTAGCTTGTGGACGCCCATTGGTTGTTCGCGTTTCCAGTGAGAAGTACGCGGTAGAAGCAGCAGAAAATTCTTCAAAAGGAGCGGGCGAGGCAACCAAAACAAGCCTTTCTGGTAGTAGTTCAGGACAGACGAGTCGGAGCTCGAAAATAGCAGCAATCAAGAACAAATTGAAAGCCTTGGAAGAGGAGGGCTTTAGCGCCAAGAAGCAGAAGCAAACTGACACATCTTTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

159

Amino Acids

17.23

Weight (kDa)

9.52

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 323
AccII CGCG 2 cut(s) 270, 290
AciI CCGC 2 cut(s) 290, 323
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 148, 216
AcsI RAATTY 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 2 cut(s) 315, 412
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 2 cut(s) 245, 381
AluI AGCT 2 cut(s) 245, 381
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 148, 216
ApeKI GCWGC 4 cut(s) 80, 195, 299, 392
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 32
BalI TGGCCA 1 cut(s) 218
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 383
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 4 cut(s) 67, 207, 311, 404
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 441
BisI GCNGC 4 cut(s) 81, 196, 300, 393
BlsI GCNGC 4 cut(s) 82, 197, 301, 394
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 167, 219, 417
Bse1I ACTGG 2 cut(s) 187, 276
BseDI CCNNGG 3 cut(s) 167, 219, 417
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 56, 114
BseNI ACTGG 2 cut(s) 187, 276
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 4 cut(s) 67, 207, 311, 404
Bsh1236I CGCG 2 cut(s) 270, 290
BshFI GGCC 2 cut(s) 150, 218
BsiHKAI GWGCWC 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 150, 218
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 4, 61
BspACI CCGC 2 cut(s) 290, 323
BspANI GGCC 2 cut(s) 150, 218
BspCNI CTCAG 2 cut(s) 57, 115
BspFNI CGCG 2 cut(s) 270, 290
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 323
BsrI ACTGG 2 cut(s) 187, 276
BssECI CCNNGG 3 cut(s) 167, 219, 417
BssMI GATC 2 cut(s) 4, 61
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 2 cut(s) 219, 417
Bst2BI CACGAG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 65, 123
BstDSI CCRYGG 1 cut(s) 167
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 270, 290
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 2 cut(s) 7, 64
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 4, 61
BstMWI GCNNNNNNNGC 3 cut(s) 215, 296, 329
BstPI GGTNACC 1 cut(s) 53
BstUI CGCG 2 cut(s) 270, 290
BstV1I GCAGC 4 cut(s) 67, 207, 311, 404
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 150, 218
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 1 cut(s) 440
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 233
CviJI RGCY 9 cut(s) 80, 150, 166, 218, 245, 345, 381, 416, 432
CviKI_1 RGCY 9 cut(s) 80, 150, 166, 218, 245, 345, 381, 416, 432
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 65, 123
DpnI GATC 2 cut(s) 6, 63
DpnII GATC 2 cut(s) 4, 61
DrdI GACNNNNNNGTC 1 cut(s) 372
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 2 cut(s) 148, 216
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 219, 417
Eco24I GRGCYC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 381
Eco91I GGTNACC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 53
EcoT14I CCWWGG 2 cut(s) 219, 417
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 2 cut(s) 219, 417
FaeI CATG 1 cut(s) 236
FaiI YATR 2 cut(s) 192, 234
FatI CATG 1 cut(s) 232
FauI CCCGC 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 81, 196, 300, 393
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 81, 196, 300, 393
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 81, 196, 300, 393
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 2 cut(s) 150, 218
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 1 cut(s) 373
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 66, 378
Hpy188III TCNNGA 2 cut(s) 363, 400
Hpy8I GTNNAC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 232, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 296, 329
HpyF3I CTNAG 2 cut(s) 65, 123
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 2 cut(s) 4, 61
LmnI GCTCC 2 cut(s) 320, 378
LpnPI CCDG 5 cut(s) 3, 200, 289, 336, 348
Lsp1109I GCAGC 4 cut(s) 67, 207, 311, 404
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 2 cut(s) 53, 118
MalI GATC 2 cut(s) 6, 63
MbiI CCGCTC 1 cut(s) 323
MboI GATC 2 cut(s) 4, 61
MboII GAAGA 4 cut(s) 124, 238, 303, 434
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 4 cut(s) 87, 212, 307, 407
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 7 cut(s) 60, 70, 118, 196, 322, 418, 421
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 234
MscI TGGCCA 1 cut(s) 218
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 218
MvnI CGCG 2 cut(s) 270, 290
MwoI GCNNNNNNNGC 3 cut(s) 215, 296, 329
NdeII GATC 2 cut(s) 4, 61
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 234
OliI CACNNNNGTG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 82, 197, 301, 394
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 4 cut(s) 81, 196, 300, 393
Sau3AI GATC 2 cut(s) 4, 61
SchI GAGTC 1 cut(s) 382
SduI GDGCHC 1 cut(s) 383
SetI ASST 4 cut(s) 60, 160, 247, 383
SfaNI GCATC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 4 cut(s) 87, 212, 307, 407
SsiI CCGC 2 cut(s) 290, 323
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 383
StyI CCWWGG 2 cut(s) 219, 417
TaiI ACGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 383
TasI AATT 4 cut(s) 87, 212, 307, 407
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 283
TseI GCWGC 4 cut(s) 80, 195, 299, 392
TspDTI ATGAA 2 cut(s) 39, 172
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 283
XapI RAATTY 1 cut(s) 307
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.