Rorug01G0407000

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011461
Physical Location & Seq
Forward (+)
51348463 .. 51351138
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0407000.1

Sequence Viewer

Length: 813 bp
ATGAAGTATTTCTATTCATCTCACCAAGAGGTTTATATAAGACTACCTCAGGCAACTGAGAAAGAGACGACTGCAAATCCATGTAGAGCAATCGAAGGCCAGGTTGAGACTCCAAAGGGAGAGCTACCGAACCAACCGACTGCAAGCAGTCAGACTCAAACTTCACCGCCTGCAGACCCATATTCCGTGCCAACTCCAAAGCTTCAAAACCCGCTAATTATTCAACATGCTCAGCTGAAGAGACACGAACTCGATGGCAAGGATGTGGTGCAACTGGTGGCTTTGGTGAAGAGACTAACATTCAAGGCGCGTGGCAGGATAACCAAGCTCCTCACGAAGCTCATGAAGGAAAAGAAGAATAAGGCAACAAAAATGACCCCCCGGAACAATGACATCATCTCAGCCCTGATTCTTCTGAGAGATGAAGATGGACATGCAGAGCAAAAAGAAGTAGTTAAGGCTGTTGAAGGAAGTGAAAGAAAGGTTATTACATGGAATGAAATCCAAATGATGAAGCACACATGGAGAGTGGCCCAAGAGCTCATGAGAATGACTCCCCCTGCTTTTGGTAACTTCAAATGTGCATGGAGAGATACTAACTTCGATGGCTATGATATCCCCAAGGGATGGAAGGTTTTCTGGGTGGCATCTGGTACACACATGGACAGCAACATATTTGAAGATCCAAACAGGTTTGATCCATCGCGGTCGAGAACTCAACGAAATCATTTCCTCCGTACACATACATTGCATTCGGATCAGGCCCGCGAATTTGTCCCGGGGCAGAATTTGCAAGGATTGAAGTGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

270

Amino Acids

31.05

Weight (kDa)

9.51

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 148 - 240 8.2e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 627
AccII CGCG 3 cut(s) 310, 706, 768
AciI CCGC 4 cut(s) 167, 212, 706, 766
AclWI GGATC 3 cut(s) 677, 692, 765
AcsI RAATTY 2 cut(s) 770, 787
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 2 cut(s) 655, 739
AfiI CCNNNNNNNGG 2 cut(s) 566, 627
AgsI TTSAA 7 cut(s) 206, 224, 304, 467, 577, 680, 802
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 6 cut(s) 124, 202, 235, 328, 340, 541
AluI AGCT 6 cut(s) 124, 202, 235, 328, 340, 541
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 4 cut(s) 59, 101, 235, 286
AlwI GGATC 3 cut(s) 677, 692, 765
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 3 cut(s) 97, 531, 762
ApoI RAATTY 2 cut(s) 770, 787
Asp700I GAANNNNTTC 2 cut(s) 8, 635
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 532, 763
AsuC2I CCSGG 3 cut(s) 382, 779, 780
AsuHPI GGTGA 3 cut(s) 14, 156, 298
AvaI CYCGRG 1 cut(s) 778
AxyI CCTNAGG 1 cut(s) 48
BanII GRGCYC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 543
BccI CCATC 5 cut(s) 248, 422, 599, 621, 709
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 3 cut(s) 382, 779, 780
BcoDI GTCTC 4 cut(s) 59, 101, 235, 286
BfmI CTRYAG 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 231
Bme1390I CCNGG 4 cut(s) 101, 382, 779, 780
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 532, 763
BmrFI CCNGG 4 cut(s) 101, 382, 779, 780
BmsI GCATC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 538, 570
Bpu1102I GCTNAGC 1 cut(s) 231
BpuMI CCSGG 3 cut(s) 382, 779, 780
BsaJI CCNNGG 4 cut(s) 380, 621, 778, 779
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 627
Bse1I ACTGG 1 cut(s) 279
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 746
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 4 cut(s) 380, 621, 778, 779
BseGI GGATG 2 cut(s) 268, 632
BseLI CCNNNNNNNGG 2 cut(s) 566, 627
BseMI GCAATG 1 cut(s) 746
BseMII CTCAG 5 cut(s) 48, 62, 245, 407, 414
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 320
Bsh1236I CGCG 3 cut(s) 310, 706, 768
Bsh1285I CGRYCG 1 cut(s) 710
BshFI GGCC 3 cut(s) 99, 533, 764
BsiEI CGRYCG 1 cut(s) 710
BsiHKAI GWGCWC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 2 cut(s) 382, 779
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 2 cut(s) 566, 627
BsmAI GTCTC 4 cut(s) 59, 101, 235, 286
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 761
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 3 cut(s) 99, 533, 764
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 3 cut(s) 682, 697, 757
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 4 cut(s) 167, 212, 706, 766
BspANI GGCC 3 cut(s) 99, 533, 764
BspCNI CTCAG 5 cut(s) 49, 61, 244, 408, 413
BspFNI CGCG 3 cut(s) 310, 706, 768
BspHI TCATGA 2 cut(s) 342, 543
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 3 cut(s) 677, 692, 765
BsrDI GCAATG 1 cut(s) 746
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 4 cut(s) 380, 621, 778, 779
BssMI GATC 3 cut(s) 682, 697, 757
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 233, 284
BstAPI GCANNNNNTGC 1 cut(s) 790
BstC8I GCNNGC 3 cut(s) 145, 171, 766
BstDEI CTNAG 5 cut(s) 48, 57, 231, 400, 416
BstF5I GGATG 2 cut(s) 268, 632
BstFNI CGCG 3 cut(s) 310, 706, 768
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 3 cut(s) 685, 700, 760
BstMAI GTCTC 4 cut(s) 59, 101, 235, 286
BstMBI GATC 3 cut(s) 682, 697, 757
BstMCI CGRYCG 1 cut(s) 710
BstMWI GCNNNNNNNGC 1 cut(s) 790
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 2 cut(s) 230, 437
BstSCI CCNGG 4 cut(s) 99, 380, 777, 778
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 3 cut(s) 310, 706, 768
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 3 cut(s) 99, 533, 764
BtgZI GCGATG 1 cut(s) 687
BtsCI GGATG 2 cut(s) 268, 632
Cac8I GCNNGC 3 cut(s) 145, 171, 766
CciI TCATGA 2 cut(s) 342, 543
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 532, 763
Cfr9I CCCGGG 1 cut(s) 778
Csp6I GTAC 2 cut(s) 654, 738
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 9 cut(s) 81, 227, 343, 434, 492, 522, 544, 585, 661
CviQI GTAC 2 cut(s) 654, 738
DdeI CTNAG 5 cut(s) 48, 57, 231, 400, 416
DpnI GATC 3 cut(s) 684, 699, 759
DpnII GATC 3 cut(s) 682, 697, 757
Eam1104I CTCTTC 2 cut(s) 233, 284
EarI CTCTTC 2 cut(s) 233, 284
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 616
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 9 cut(s) 84, 230, 346, 437, 495, 525, 547, 588, 664
FaqI GGGAC 1 cut(s) 761
FatI CATG 9 cut(s) 80, 226, 342, 433, 491, 521, 543, 584, 660
FauI CCCGC 2 cut(s) 219, 773
FokI GGATG 2 cut(s) 275, 639
FriOI GRGCYC 1 cut(s) 543
GlaI GCGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 99, 533, 764
HapII CCGG 2 cut(s) 382, 779
HhaI GCGC 1 cut(s) 310
Hin1II CATG 9 cut(s) 84, 230, 346, 437, 495, 525, 547, 588, 664
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 109, 154, 409, 553
HpaII CCGG 2 cut(s) 382, 779
HphI GGTGA 3 cut(s) 14, 156, 298
Hpy166II GTNNAC 2 cut(s) 656, 740
Hpy188I TCNGA 3 cut(s) 153, 417, 757
Hpy188III TCNNGA 4 cut(s) 334, 343, 544, 711
Hpy8I GTNNAC 2 cut(s) 656, 740
HpyAV CCTTC 4 cut(s) 89, 340, 461, 625
HpyCH4V TGCA 8 cut(s) 74, 143, 173, 271, 437, 584, 751, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 790
HpyF3I CTNAG 5 cut(s) 48, 57, 231, 400, 416
Hsp92II CATG 9 cut(s) 84, 230, 346, 437, 495, 525, 547, 588, 664
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 3 cut(s) 682, 697, 757
LmnI GCTCC 1 cut(s) 333
LweI GCATC 1 cut(s) 656
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 684, 699, 759
MboI GATC 3 cut(s) 682, 697, 757
MboII GAAGA 6 cut(s) 250, 301, 367, 404, 437, 692
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 3 cut(s) 216, 770, 787
MlyI GAGTC 3 cut(s) 103, 148, 547
MnlI CCTC 4 cut(s) 22, 57, 341, 743
MroXI GAANNNNTTC 2 cut(s) 8, 635
MseI TTAA 2 cut(s) 456, 811
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 2 cut(s) 382, 779
MspR9I CCNGG 4 cut(s) 101, 382, 779, 780
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 3 cut(s) 310, 706, 768
MwoI GCNNNNNNNGC 1 cut(s) 790
NciI CCSGG 3 cut(s) 382, 779, 780
NdeII GATC 3 cut(s) 682, 697, 757
NlaIII CATG 9 cut(s) 84, 230, 346, 437, 495, 525, 547, 588, 664
NspI RCATGY 2 cut(s) 230, 437
PagI TCATGA 2 cut(s) 342, 543
PctI GAATGC 1 cut(s) 751
PdmI GAANNNNTTC 2 cut(s) 8, 635
PfeI GAWTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 627
PleI GAGTC 3 cut(s) 103, 148, 547
PpsI GAGTC 3 cut(s) 103, 148, 547
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 2 cut(s) 532, 763
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 655, 739
RsaNI GTAC 2 cut(s) 654, 738
RseI CAYNNNNRTG 1 cut(s) 548
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 456, 811
Sau3AI GATC 3 cut(s) 682, 697, 757
Sau96I GGNCC 2 cut(s) 532, 763
SchI GAGTC 3 cut(s) 103, 148, 547
ScrFI CCNGG 4 cut(s) 101, 382, 779, 780
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 171
SmaI CCCGGG 1 cut(s) 780
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 3 cut(s) 216, 770, 787
SsiI CCGC 4 cut(s) 167, 212, 706, 766
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 99, 380, 777, 778
StyI CCWWGG 1 cut(s) 621
TaqI TCGA 4 cut(s) 93, 252, 603, 710
TasI AATT 3 cut(s) 216, 770, 787
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 456, 811
Tru9I TTAA 2 cut(s) 456, 811
TspDTI ATGAA 6 cut(s) 6, 17, 359, 438, 513, 527
TspGWI ACGGA 2 cut(s) 175, 725
TspMI CCCGGG 1 cut(s) 778
Van91I CCANNNNNTGG 1 cut(s) 627
XapI RAATTY 2 cut(s) 770, 787
XceI RCATGY 2 cut(s) 230, 437
XmaI CCCGGG 1 cut(s) 778
XmnI GAANNNNTTC 2 cut(s) 8, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.