MD01G1207500.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011461
Physical Location & Seq
Reverse (-)
30264228 .. 30266229
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1207500.v1.1.491

Sequence Viewer

Length: 486 bp
ATGGATCCTAATGGTTCTTCCGATGAAAAGAGTGAAAGTAGAATCTACATTGGTAACCTTGATCTGAGAATAACGGAGGCTGCTCTAATTAAGATGTTTTCTCCGTTTGGGAAGATTATAACTGAGGACTTTCTGTGGCACACTCGTGGCCGAAAGCGCGGAGAGCCACGGGGTTTTGCTTTCATCCAGTATAGCAACAAAGAGGAAGCAAGATTGGCCAAGGAGAAGATGCATGGGAGACTAGCATGTGGACGTCCGTTGGTTGTCCGTGTTTCCAGTGACAAGTACTTGGTAGAACCAGCAGACAATTCTTCCAAAGGAGTGGGCGAGGCAACCAAAACAAGCGTTTCCGGCACTAGCTCAGGACAGACGAGCAGGAGCTCCAAAATAGCAGCAATCAAGAACAAATTGAAGGCTCTGGAGGAGGAGGGCTTCAGCGCCAAGAAGCAGAAGCAAGAAGCCGACACGTCCATCGACAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

162

Amino Acids

17.84

Weight (kDa)

9.65

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 15 - 87 2.3e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AatII GACGTC 1 cut(s) 256
AccII CGCG 1 cut(s) 159
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 148, 216
AcuI CTGAAG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 1 cut(s) 412
AjiI CACGTC 1 cut(s) 468
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 2 cut(s) 360, 381
AluI AGCT 2 cut(s) 360, 381
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 148, 216
ApeKI GCWGC 2 cut(s) 80, 392
AspLEI GCGC 2 cut(s) 159, 440
BalI TGGCCA 1 cut(s) 218
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 383
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 2 cut(s) 67, 404
BccI CCATC 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 242, 357
BfoI RGCGCY 1 cut(s) 441
BisI GCNGC 2 cut(s) 81, 393
BlsI GCNGC 2 cut(s) 82, 394
BmcAI AGTACT 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 167, 219
Bse1I ACTGG 2 cut(s) 187, 276
BseDI CCNNGG 2 cut(s) 167, 219
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 56, 114, 375
BseNI ACTGG 2 cut(s) 187, 276
BseRI GAGGAG 2 cut(s) 437, 440
BseXI GCAGC 2 cut(s) 67, 404
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 150, 218
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 150, 218
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 4, 61
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 150, 218
BspCNI CTCAG 3 cut(s) 57, 115, 374
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 2 cut(s) 187, 276
BssECI CCNNGG 2 cut(s) 167, 219
BssMI GATC 2 cut(s) 4, 61
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 65, 123, 361
BstDSI CCRYGG 1 cut(s) 167
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 2 cut(s) 159, 440
BstKTI GATC 2 cut(s) 7, 64
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 4, 61
BstMWI GCNNNNNNNGC 4 cut(s) 156, 163, 215, 351
BstNSI RCATGY 1 cut(s) 249
BstPI GGTNACC 1 cut(s) 53
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 67, 404
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 150, 218
BtgI CCRYGG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 283
CfoI GCGC 2 cut(s) 159, 440
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 233, 246
CviJI RGCY 9 cut(s) 80, 150, 166, 218, 360, 381, 416, 432, 461
CviKI_1 RGCY 9 cut(s) 80, 150, 166, 218, 360, 381, 416, 432, 461
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 65, 123, 361
DpnI GATC 2 cut(s) 6, 63
DpnII GATC 2 cut(s) 4, 61
EaeI YGGCCR 2 cut(s) 148, 216
Ecl136II GAGCTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 236, 249
FaiI YATR 4 cut(s) 119, 192, 234, 247
FatI CATG 2 cut(s) 232, 245
Fnu4HI GCNGC 2 cut(s) 81, 393
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 81, 393
FspBI CTAG 2 cut(s) 242, 357
GlaI GCGC 2 cut(s) 158, 439
GluI GCNGC 2 cut(s) 81, 393
GsuI CTGGAG 1 cut(s) 440
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 2 cut(s) 150, 218
HapII CCGG 1 cut(s) 351
HhaI GCGC 2 cut(s) 159, 440
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 2 cut(s) 236, 249
Hin6I GCGC 2 cut(s) 157, 438
HinP1I GCGC 2 cut(s) 157, 438
HinfI GANTC 1 cut(s) 42
HpaII CCGG 1 cut(s) 351
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 22, 66
Hpy188III TCNNGA 3 cut(s) 363, 400, 419
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 406, 474
HpyCH4IV ACGT 2 cut(s) 253, 467
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 163, 215, 351
HpyF3I CTNAG 3 cut(s) 65, 123, 361
HpySE526I ACGT 2 cut(s) 253, 467
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 2 cut(s) 236, 249
HspAI GCGC 2 cut(s) 157, 438
Kzo9I GATC 2 cut(s) 4, 61
LmnI GCTCC 2 cut(s) 378, 386
LpnPI CCDG 7 cut(s) 200, 289, 312, 348, 361, 364, 404
Lsp1109I GCAGC 2 cut(s) 67, 404
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 242, 357
MaeII ACGT 2 cut(s) 253, 467
MaeIII GTNAC 2 cut(s) 53, 278
MalI GATC 2 cut(s) 6, 63
MboI GATC 2 cut(s) 4, 61
MboII GAAGA 4 cut(s) 9, 124, 238, 303
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 3 cut(s) 87, 307, 407
MluNI TGGCCA 1 cut(s) 218
MnlI CCTC 7 cut(s) 70, 118, 196, 322, 415, 418, 421
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 234
MscI TGGCCA 1 cut(s) 218
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 218
MspI CCGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 4 cut(s) 156, 163, 215, 351
NdeII GATC 2 cut(s) 4, 61
NlaIII CATG 2 cut(s) 236, 249
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 234
NspI RCATGY 1 cut(s) 249
OliI CACNNNNGTG 1 cut(s) 144
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 82, 394
PsiI TTATAA 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 81, 393
Sau3AI GATC 2 cut(s) 4, 61
ScaI AGTACT 1 cut(s) 287
SduI GDGCHC 1 cut(s) 383
SetI ASST 6 cut(s) 60, 256, 362, 383, 470, 485
SfaNI GCATC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 3 cut(s) 87, 307, 407
SsiI CCGC 1 cut(s) 159
SspMI CTAG 2 cut(s) 242, 357
SstI GAGCTC 1 cut(s) 383
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 2 cut(s) 256, 470
TaqI TCGA 1 cut(s) 474
TasI AATT 3 cut(s) 87, 307, 407
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 80, 392
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 39, 172
TspGWI ACGGA 4 cut(s) 89, 93, 246, 257
TspRI CASTG 1 cut(s) 283
XceI RCATGY 1 cut(s) 249
XspI CTAG 2 cut(s) 242, 357
ZraI GACGTC 1 cut(s) 254
ZrmI AGTACT 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.