RchiOBHm_Chr1g0378211

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011461
Physical Location & Seq
Reverse (-)
64780488 .. 64782631
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60164

Sequence Viewer

Length: 537 bp
ATGGATCATGTTTTTGTTGGCGAAAACACGGAAGCAAAACTCTACATTGGTAACCTTGATATGAGAATAACAGAGGCTGCTCTACTCAAGATGTTTTCTCCGTTTGGGAAGATCGTACATGAGGAATTTTTGCTGCATACTCGTGGCCGCAAACGTGGAGAGCCTCGAGGCTTTGCTTTCATCCAGTATAGTAGTGAAGAGTTCCTGATTTCCACCATTAAAGTGAGCATGCAGGAAGCAAAATTGGCCAAGGAGAAGATGCACGGGAGACTAGCTTGCGGGCGCCCATTAGTCGTCCGTCTTTCCAGCGAAAAATACTCAATACAAGAAACAGAGAACCCTTCCAGACAAGCCGGCAACGCCACCAAAACAAGCCTTTCGGCCAGCAGTTCAGGACAGATGAGTCGGACCTCCAAAATAGCAGCAATCAAGAACAAACTGAAAGCTCTGGAGGGCGAGGGCTTTAGCGCCAAGAAGCAGAAGCAAGACAACGCCTCTTGCAGCAGTAGCCTTGATCATCCATCAGGCCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

9.66

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 14 - 73 5.8e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 402
AbsI CCTCGAGG 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 282
AciI CCGC 2 cut(s) 148, 279
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 3 cut(s) 145, 246, 381
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 1 cut(s) 117
AluBI AGCT 2 cut(s) 275, 446
AluI AGCT 2 cut(s) 275, 446
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 4 cut(s) 145, 246, 381, 526
ApeKI GCWGC 4 cut(s) 77, 133, 422, 501
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 285, 470
AspS9I GGNCC 1 cut(s) 408
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 1 cut(s) 282
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 4 cut(s) 64, 120, 434, 513
BccI CCATC 1 cut(s) 529
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 2 cut(s) 286, 471
BisI GCNGC 5 cut(s) 78, 134, 148, 423, 502
BlsI GCNGC 5 cut(s) 79, 135, 149, 424, 503
Bme18I GGWCC 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 284
BmsI GCATC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 180, 517
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 4 cut(s) 64, 120, 434, 513
BshFI GGCC 4 cut(s) 147, 248, 383, 528
BshNI GGYRCC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 4 cut(s) 147, 248, 383, 528
BsoBI CYCGRG 1 cut(s) 165
Bsp143I GATC 3 cut(s) 4, 111, 514
BspACI CCGC 2 cut(s) 148, 279
BspANI GGCC 4 cut(s) 147, 248, 383, 528
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 4, 111, 514
BssNI GRCGYC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 283
BstC8I GCNNGC 5 cut(s) 230, 277, 281, 355, 385
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 180, 517
BstH2I RGCGCY 2 cut(s) 286, 471
BstHHI GCGC 2 cut(s) 285, 470
BstKTI GATC 3 cut(s) 7, 114, 517
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 3 cut(s) 4, 111, 514
BstMWI GCNNNNNNNGC 3 cut(s) 245, 359, 507
BstNSI RCATGY 1 cut(s) 232
BstPI GGTNACC 1 cut(s) 50
BstV1I GCAGC 4 cut(s) 64, 120, 434, 513
BsuRI GGCC 4 cut(s) 147, 248, 383, 528
BtsCI GGATG 2 cut(s) 180, 517
Cac8I GCNNGC 5 cut(s) 230, 277, 281, 355, 385
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 2 cut(s) 285, 470
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 116
CviAII CATG 3 cut(s) 8, 119, 229
CviQI GTAC 1 cut(s) 116
DinI GGCGCC 1 cut(s) 284
DpnI GATC 3 cut(s) 6, 113, 516
DpnII GATC 3 cut(s) 4, 111, 514
DrdI GACNNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 402
EaeI YGGCCR 3 cut(s) 145, 246, 381
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 284
EheI GGCGCC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 3 cut(s) 11, 122, 232
FaiI YATR 6 cut(s) 9, 62, 120, 138, 189, 230
FatI CATG 3 cut(s) 7, 118, 228
FauI CCCGC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 5 cut(s) 78, 134, 148, 423, 502
FokI GGATG 2 cut(s) 167, 504
Fsp4HI GCNGC 5 cut(s) 78, 134, 148, 423, 502
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 284, 469
GluI GCNGC 5 cut(s) 78, 134, 148, 423, 502
GsuI CTGGAG 1 cut(s) 470
HaeII RGCGCY 2 cut(s) 286, 471
HaeIII GGCC 4 cut(s) 147, 248, 383, 528
HapII CCGG 1 cut(s) 354
HhaI GCGC 2 cut(s) 285, 470
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 3 cut(s) 11, 122, 232
Hin6I GCGC 2 cut(s) 283, 468
HinP1I GCGC 2 cut(s) 283, 468
HinfI GANTC 1 cut(s) 403
HpaII CCGG 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 6 cut(s) 88, 205, 345, 393, 430, 449
HpyAV CCTTC 1 cut(s) 351
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 4 cut(s) 136, 232, 262, 501
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 359, 507
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 3 cut(s) 11, 122, 232
HspAI GCGC 2 cut(s) 283, 468
KasI GGCGCC 1 cut(s) 282
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 4, 111, 514
Lsp1109I GCAGC 4 cut(s) 64, 120, 434, 513
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 50
MalI GATC 3 cut(s) 6, 113, 516
MboI GATC 3 cut(s) 4, 111, 514
MboII GAAGA 3 cut(s) 121, 209, 268
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 2 cut(s) 125, 242
MluNI TGGCCA 1 cut(s) 248
Mly113I GGCGCC 1 cut(s) 283
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 8 cut(s) 67, 115, 161, 174, 421, 445, 451, 505
Mox20I TGGCCA 1 cut(s) 248
MroNI GCCGGC 1 cut(s) 353
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 141, 221
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 245, 359, 507
NaeI GCCGGC 1 cut(s) 355
NarI GGCGCC 1 cut(s) 283
NdeII GATC 3 cut(s) 4, 111, 514
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 3 cut(s) 11, 122, 232
NlaIV GGNNCC 1 cut(s) 284
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 355
PkrI GCNGC 5 cut(s) 79, 135, 149, 424, 503
PleI GAGTC 1 cut(s) 411
PluTI GGCGCC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 411
PspEI GGTNACC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 408
PspXI VCTCGAGB 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 141, 221
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 5 cut(s) 78, 134, 148, 423, 502
Sau3AI GATC 3 cut(s) 4, 111, 514
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 412
SetI ASST 5 cut(s) 57, 157, 277, 413, 448
SfaNI GCATC 1 cut(s) 249
SfoI GGCGCC 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 408
SlaI CTCGAG 1 cut(s) 165
SmiMI CAYNNNNRTG 2 cut(s) 141, 221
SmlI CTYRAG 2 cut(s) 86, 165
SmoI CTYRAG 2 cut(s) 86, 165
SphI GCATGC 1 cut(s) 232
Sse9I AATT 2 cut(s) 125, 242
SsiI CCGC 2 cut(s) 148, 279
SspDI GGCGCC 1 cut(s) 282
SspMI CTAG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 249
TaiI ACGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 125, 242
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 4 cut(s) 77, 133, 422, 501
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 3 cut(s) 44, 90, 287
VpaK11BI GGWCC 1 cut(s) 408
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.