pycom07g25320

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011461
Physical Location & Seq
Reverse (-)
25671341 .. 25671622
282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25320.1

Sequence Viewer

Length: 282 bp
ATGCAGGAAGCAAGATTGGCCAAGGAGAAGATGCATGGGAGACTAGCATGGGGACGCCCGCTGGTTGTCCGCGTTTCCAGTGACAAGTACTTGGTAGAACCAGCAGAGAATTCTTCCAAAGGAGTGGGCGAGGCCACCAAAACAAGCGCTTCTGGCACTAGTTCAGGACAAATGAGCCGGAGCTCCAAAATAACAGCAATCAAGAACAAATTGAAGGCTCTGGAGGAGGAGGGCTACAGCGCCAAGAAGCAGAAGCAAGAAGCCGACACGTCTTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

94

Amino Acids

10.1

Weight (kDa)

9.74

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 59, 70
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 1 cut(s) 89
AfeI AGCGCT 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 214
AhlI ACTAGT 1 cut(s) 158
AjiI CACGTC 1 cut(s) 270
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 34
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 2 cut(s) 18, 132
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 2 cut(s) 149, 242
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 34
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 44, 159
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 2 cut(s) 150, 243
BmcAI AGTACT 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 270
BmsI GCATC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 239, 242
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 20, 134
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 2 cut(s) 20, 134
Bsp1286I GDGCHC 1 cut(s) 185
BspACI CCGC 2 cut(s) 59, 70
BspANI GGCC 2 cut(s) 20, 134
BspFNI CGCG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 59
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 2 cut(s) 150, 243
BstHHI GCGC 2 cut(s) 149, 242
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 17, 153
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 2 cut(s) 20, 134
BtrI CACGTC 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 2 cut(s) 149, 242
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 35, 48
CviJI RGCY 7 cut(s) 20, 134, 177, 183, 218, 234, 263
CviKI_1 RGCY 7 cut(s) 20, 134, 177, 183, 218, 234, 263
CviQI GTAC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 38, 51
FaiI YATR 2 cut(s) 36, 49
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 34, 47
FauI CCCGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 2 cut(s) 44, 159
GlaI GCGC 2 cut(s) 148, 241
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 2 cut(s) 150, 243
HaeIII GGCC 2 cut(s) 20, 134
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 149, 242
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 2 cut(s) 38, 51
Hin6I GCGC 2 cut(s) 147, 240
HinP1I GCGC 2 cut(s) 147, 240
HpaII CCGG 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 165, 202, 221
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 4, 34, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 153
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 2 cut(s) 38, 51
HspAI GCGC 2 cut(s) 147, 240
LmnI GCTCC 2 cut(s) 180, 188
LpnPI CCDG 7 cut(s) 47, 91, 114, 138, 150, 191, 206
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 44, 159
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 2 cut(s) 40, 105
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 2 cut(s) 109, 209
MluNI TGGCCA 1 cut(s) 20
MnlI CCTC 4 cut(s) 124, 217, 220, 223
Mox20I TGGCCA 1 cut(s) 20
Mph1103I ATGCAT 1 cut(s) 36
MscI TGGCCA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 17, 153
NlaIII CATG 2 cut(s) 38, 51
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SacI GAGCTC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 89
SduI GDGCHC 1 cut(s) 185
SetI ASST 2 cut(s) 185, 272
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 235
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 2 cut(s) 109, 209
SsiI CCGC 2 cut(s) 59, 70
SspMI CTAG 2 cut(s) 44, 159
SstI GAGCTC 1 cut(s) 185
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 272
TasI AATT 2 cut(s) 109, 209
TatI WGTACW 1 cut(s) 87
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspRI CASTG 1 cut(s) 85
XapI RAATTY 1 cut(s) 109
XspI CTAG 2 cut(s) 44, 159
ZrmI AGTACT 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.