FvH4_7g30160

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011461
Physical Location & Seq
Reverse (-)
22051137 .. 22053103
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30160.t1

Sequence Viewer

Length: 510 bp
ATGGATCCTAATGTTTTTTTTGGTGAAAAGACGGAAGCAAAACTATACATTGGGAACCTTGATATGAGAATAACAGAGGCTGCTCTAATCAAGATGTTCTCTCCGTATGGGAAGATTGTACACGAGGAATTCTTGCTGCATACTCATGGCAGGAAACGCGGAGAGCCTCGAGGCTTTGCTTTCATCCAGTATAGTAGTGAAGAGGAAGCAAAATTAGCCAAGGAGAAGATGCATGGGCGACTAGCTTGCGGACGCCCATTAGTCGTCCGCCTCTCCAGTGAAAAATACTTAATACAAGAACCACATAATCCTTCCGGACAATCAGGCGAGGCCACCAAAACAAGCCATTCGGCCAGCAGTTCAGGACAGATGAGTCGGACCTCCAAAATAGCAGCAATCAAGAACAAACTGAAAGCTCTGGAAGGCGAGGGTTTTAGCGCCAAGAAGCAGAAGCAAGACGACATCCCTTGCAGCAACAATAGCATTGATCATCCATCAGTCCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

170

Amino Acids

18.8

Weight (kDa)

9.32

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 15 - 87 2.1e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 372
AbsI CCTCGAGG 1 cut(s) 168
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 3 cut(s) 159, 249, 268
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 120
AluBI AGCT 2 cut(s) 245, 416
AluI AGCT 2 cut(s) 245, 416
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 2 cut(s) 330, 351
ApeKI GCWGC 4 cut(s) 80, 136, 392, 471
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 378
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 122
BbvI GCAGC 4 cut(s) 67, 123, 404, 483
BccI CCATC 1 cut(s) 502
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BclI TGATCA 1 cut(s) 487
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 441
BisI GCNGC 4 cut(s) 81, 137, 393, 472
BlsI GCNGC 4 cut(s) 82, 138, 394, 473
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 6, 56
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 187, 276
BseAI TCCGGA 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 183, 462, 490
BseNI ACTGG 2 cut(s) 187, 276
BseXI GCAGC 4 cut(s) 67, 123, 404, 483
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 332, 353
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 315
BsnI GGCC 2 cut(s) 332, 353
BsoBI CYCGRG 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 4, 487
BspACI CCGC 3 cut(s) 159, 249, 268
BspANI GGCC 2 cut(s) 332, 353
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 6, 56
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 118
BsrI ACTGG 2 cut(s) 187, 276
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 4, 487
BssNI GRCGYC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 247, 355
BstF5I GGATG 3 cut(s) 183, 462, 490
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 2 cut(s) 7, 490
BstMBI GATC 2 cut(s) 4, 487
BstMWI GCNNNNNNNGC 3 cut(s) 156, 215, 480
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 67, 123, 404, 483
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 332, 353
BtsCI GGATG 3 cut(s) 183, 462, 490
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 247, 355
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 119
CviAII CATG 2 cut(s) 146, 233
CviJI RGCY 9 cut(s) 80, 166, 174, 218, 245, 332, 345, 353, 416
CviKI_1 RGCY 9 cut(s) 80, 166, 174, 218, 245, 332, 345, 353, 416
CviQI GTAC 1 cut(s) 119
DpnI GATC 2 cut(s) 6, 489
DpnII GATC 2 cut(s) 4, 487
DrdI GACNNNNNNGTC 1 cut(s) 372
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 149, 236
FaiI YATR 8 cut(s) 46, 65, 108, 141, 147, 192, 234, 306
FatI CATG 2 cut(s) 145, 232
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 4 cut(s) 81, 137, 393, 472
FokI GGATG 3 cut(s) 170, 449, 477
Fsp4HI GCNGC 4 cut(s) 81, 137, 393, 472
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 81, 137, 393, 472
GsuI CTGGAG 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 2 cut(s) 332, 353
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 2 cut(s) 149, 236
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 1 cut(s) 373
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 5 cut(s) 91, 315, 363, 400, 419
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 321, 416
HpyCH4V TGCA 3 cut(s) 139, 232, 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 215, 480
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 2 cut(s) 149, 236
HspAI GCGC 1 cut(s) 438
Kpn2I TCCGGA 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 4, 487
LpnPI CCDG 8 cut(s) 136, 200, 289, 309, 328, 348, 367, 404
Lsp1109I GCAGC 4 cut(s) 67, 123, 404, 483
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 242
MalI GATC 2 cut(s) 6, 489
MboI GATC 2 cut(s) 4, 487
MboII GAAGA 3 cut(s) 124, 212, 238
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 128, 212
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 9 cut(s) 70, 118, 164, 177, 196, 281, 322, 391, 421
Mph1103I ATGCAT 1 cut(s) 234
MroI TCCGGA 1 cut(s) 314
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 156, 215, 480
NdeII GATC 2 cut(s) 4, 487
NlaIII CATG 2 cut(s) 149, 236
NlaIV GGNNCC 2 cut(s) 6, 56
NsiI ATGCAT 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 168
PkrI GCNGC 4 cut(s) 82, 138, 394, 473
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 6, 56
PspPI GGNCC 1 cut(s) 378
PspXI VCTCGAGB 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 4 cut(s) 81, 137, 393, 472
Sau3AI GATC 2 cut(s) 4, 487
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 382
SetI ASST 4 cut(s) 60, 247, 383, 418
SfaNI GCATC 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 2 cut(s) 128, 212
SsiI CCGC 3 cut(s) 159, 249, 268
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 1 cut(s) 169
TasI AATT 2 cut(s) 128, 212
TatI WGTACW 1 cut(s) 118
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 283
TseI GCWGC 4 cut(s) 80, 136, 392, 471
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 47, 93
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 168
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.