Rmu_sc0017581.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017581.1
OG0011461
Physical Location & Seq
Forward (+)
698 .. 1999
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017581.1_g000001.1.cds

Sequence Viewer

Length: 501 bp
atggatcatgtttttgttggcgaaaacacggaagcaaaactctacattggtaaccttgatatgagaataacagaggctgctctactcaagatgttttctccgtttgggaagatcgtccatgaggaatttttgctgcatactcgtggccgcaaacgtggagagcctcgaggctttgctttcatccagtatagtagtgaagaggaagcaaaattggccaaggagaagatgcacgggagactagcttgcgggcgcccattagtcgtccgtctttccagcgaaaaatactcaatacaagaaacagaggtttccagacaagccggcaacgccaccaaaacaagcctttcggccagcagttcaggacagatgagtcggacctccaaaatagcagcaatcaagaacaaactgaaagctctggagggcgagggctttagcgccaagaagcagaagcaagacaacgcctcttgcagcagtagccttgatcatccatcaggccaaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

166

Amino Acids

18.34

Weight (kDa)

9.6

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 366
AbsI CCTCGAGG 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 249
AciI CCGC 2 cut(s) 148, 246
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 3 cut(s) 145, 213, 345
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 250
AluBI AGCT 2 cut(s) 242, 410
AluI AGCT 2 cut(s) 242, 410
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 4 cut(s) 145, 213, 345, 490
ApeKI GCWGC 4 cut(s) 77, 133, 386, 465
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 252, 434
AspS9I GGNCC 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 372
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 249
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 4 cut(s) 64, 120, 398, 477
BccI CCATC 1 cut(s) 493
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 239
BfoI RGCGCY 2 cut(s) 253, 435
BisI GCNGC 5 cut(s) 78, 134, 148, 387, 466
BlsI GCNGC 5 cut(s) 79, 135, 149, 388, 467
Bme18I GGWCC 1 cut(s) 372
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 251
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 180, 481
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 4 cut(s) 64, 120, 398, 477
BshFI GGCC 4 cut(s) 147, 215, 347, 492
BshNI GGYRCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 229
BsnI GGCC 4 cut(s) 147, 215, 347, 492
BsoBI CYCGRG 1 cut(s) 165
Bsp143I GATC 3 cut(s) 4, 111, 478
BspACI CCGC 2 cut(s) 148, 246
BspANI GGCC 4 cut(s) 147, 215, 347, 492
BspLI GGNNCC 1 cut(s) 251
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 3 cut(s) 4, 111, 478
BssNI GRCGYC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 250
BstC8I GCNNGC 4 cut(s) 244, 248, 319, 349
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 180, 481
BstH2I RGCGCY 2 cut(s) 253, 435
BstHHI GCGC 2 cut(s) 252, 434
BstKTI GATC 3 cut(s) 7, 114, 481
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 3 cut(s) 4, 111, 478
BstMWI GCNNNNNNNGC 3 cut(s) 212, 323, 471
BstPI GGTNACC 1 cut(s) 50
BstV1I GCAGC 4 cut(s) 64, 120, 398, 477
BsuRI GGCC 4 cut(s) 147, 215, 347, 492
BtsCI GGATG 2 cut(s) 180, 481
Cac8I GCNNGC 4 cut(s) 244, 248, 319, 349
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 2 cut(s) 252, 434
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 372
CviAII CATG 2 cut(s) 8, 119
DinI GGCGCC 1 cut(s) 251
DpnI GATC 3 cut(s) 6, 113, 480
DpnII GATC 3 cut(s) 4, 111, 478
DrdI GACNNNNNNGTC 1 cut(s) 366
DseDI GACNNNNNNGTC 1 cut(s) 366
EaeI YGGCCR 3 cut(s) 145, 213, 345
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 216
EgeI GGCGCC 1 cut(s) 251
EheI GGCGCC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 11, 122
FaiI YATR 5 cut(s) 9, 62, 120, 138, 189
FatI CATG 2 cut(s) 7, 118
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 78, 134, 148, 387, 466
FokI GGATG 2 cut(s) 167, 468
Fsp4HI GCNGC 5 cut(s) 78, 134, 148, 387, 466
FspBI CTAG 1 cut(s) 239
GlaI GCGC 2 cut(s) 251, 433
GluI GCNGC 5 cut(s) 78, 134, 148, 387, 466
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 2 cut(s) 253, 435
HaeIII GGCC 4 cut(s) 147, 215, 347, 492
HapII CCGG 1 cut(s) 318
HhaI GCGC 2 cut(s) 252, 434
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 11, 122
Hin6I GCGC 2 cut(s) 250, 432
HinP1I GCGC 2 cut(s) 250, 432
HinfI GANTC 1 cut(s) 367
HpaII CCGG 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 5 cut(s) 88, 309, 357, 394, 413
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 136, 229, 465
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 323, 471
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 11, 122
HspAI GCGC 2 cut(s) 250, 432
KasI GGCGCC 1 cut(s) 249
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 3 cut(s) 4, 111, 478
LpnPI CCDG 8 cut(s) 197, 286, 322, 331, 342, 361, 398, 474
Lsp1109I GCAGC 4 cut(s) 64, 120, 398, 477
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 50
MalI GATC 3 cut(s) 6, 113, 480
MboI GATC 3 cut(s) 4, 111, 478
MboII GAAGA 3 cut(s) 121, 209, 235
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 125, 209
MluNI TGGCCA 1 cut(s) 215
Mly113I GGCGCC 1 cut(s) 250
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 350
Mox20I TGGCCA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 317
MscI TGGCCA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 212, 323, 471
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 1 cut(s) 250
NdeII GATC 3 cut(s) 4, 111, 478
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 2 cut(s) 11, 122
NlaIV GGNNCC 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 319
PkrI GCNGC 5 cut(s) 79, 135, 149, 388, 467
PleI GAGTC 1 cut(s) 375
PluTI GGCGCC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 372
PspXI VCTCGAGB 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 5 cut(s) 78, 134, 148, 387, 466
Sau3AI GATC 3 cut(s) 4, 111, 478
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 376
SetI ASST 6 cut(s) 57, 157, 244, 306, 377, 412
SfaNI GCATC 1 cut(s) 216
SfoI GGCGCC 1 cut(s) 251
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 372
SlaI CTCGAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 86, 165
SmoI CTYRAG 2 cut(s) 86, 165
Sse9I AATT 2 cut(s) 125, 209
SsiI CCGC 2 cut(s) 148, 246
SspDI GGCGCC 1 cut(s) 249
SspMI CTAG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 125, 209
TauI GCSGC 1 cut(s) 150
TseI GCWGC 4 cut(s) 77, 133, 386, 465
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 3 cut(s) 44, 90, 254
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 125
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.