MD07G1278200.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011461
Physical Location & Seq
Reverse (-)
34308954 .. 34311801
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1278200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGCATGGGAGACTAGCATGTGGACGCCCGCTGGTTGTCCGCGTTTCCAGTGACAAGTACTTGGTAGAACCAGCAGAGAATTCTTCCAAAGGAGTGGGCGAGGCCACCAAAACGAGCGCTTCTGGCACTAGTTCAGGACAGATGAGCCGGAGCTCCAAAATTACAGCAATCAAGAACAAATTGAAGGCTCTGGAGGAGGAGGGCTACAGCGCCAAGAAGCAGAAGCAAGAAGCCGACACATCTTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

84

Amino Acids

8.83

Weight (kDa)

9.56

Isoelectric Point (pI)

59.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52545 AT5G52545
fragaria_vesca FvH4_7g30160 FvH4_7g30160
malus_domestica MD01G1207500.v1.1 MD07G1278200.v1.1
prunus_persica Prupe.2G300100_v2.0.a1 Prupe.2G300100_v2.0.a1
pyrus_communis pycom01g21840 pycom07g25320
rosa_chinensis RchiOBHm_Chr1g0378211
rosa_laevigata RLG00000026461
rosa_multiflora Rmu_sc0017581.1_g000001
rosa_roxburghii Rroxscaffold_4G00280650
rosa_rugosa Rorug01G0407000
rosa_samantha Rh1AG422700 Rh1BG386400 Rh1CG400000 Rh1DG417600
rosa_wichuraiana Rw1G037470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AciI CCGC 2 cut(s) 29, 40
AcsI RAATTY 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 184
AhlI ACTAGT 1 cut(s) 128
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 4
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 119, 212
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 4
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 2 cut(s) 14, 129
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 2 cut(s) 120, 213
BmcAI AGTACT 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 209, 212
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 4
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 155
BspACI CCGC 2 cut(s) 29, 40
BspANI GGCC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 29
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 2 cut(s) 120, 213
BstHHI GCGC 2 cut(s) 119, 212
BstMAI GTCTC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 2 cut(s) 119, 212
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 5, 18
CviJI RGCY 6 cut(s) 104, 147, 153, 188, 204, 233
CviKI_1 RGCY 6 cut(s) 104, 147, 153, 188, 204, 233
CviQI GTAC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 155
Eco47III AGCGCT 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 2 cut(s) 8, 21
FaiI YATR 2 cut(s) 6, 19
FatI CATG 2 cut(s) 4, 17
FauI CCCGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 2 cut(s) 14, 129
GlaI GCGC 2 cut(s) 118, 211
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 120, 213
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 148
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 119, 212
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 2 cut(s) 8, 21
Hin6I GCGC 2 cut(s) 117, 210
HinP1I GCGC 2 cut(s) 117, 210
HpaII CCGG 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 135, 172, 191
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 4, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 2 cut(s) 8, 21
HspAI GCGC 2 cut(s) 117, 210
LmnI GCTCC 2 cut(s) 150, 158
LpnPI CCDG 7 cut(s) 17, 61, 84, 108, 120, 161, 176
MaeI CTAG 2 cut(s) 14, 129
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 79, 159, 179
MnlI CCTC 4 cut(s) 94, 187, 190, 193
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 2 cut(s) 8, 21
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 155
ScaI AGTACT 1 cut(s) 59
SduI GDGCHC 1 cut(s) 155
SetI ASST 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 205
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 3 cut(s) 79, 159, 179
SsiI CCGC 2 cut(s) 29, 40
SspMI CTAG 2 cut(s) 14, 129
SstI GAGCTC 1 cut(s) 155
TasI AATT 3 cut(s) 79, 159, 179
TatI WGTACW 1 cut(s) 57
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 21
XspI CTAG 2 cut(s) 14, 129
ZrmI AGTACT 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.