Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016074

Physical Location & Seq

Genomic Coordinates Forward (+)

21350375 .. 21352333

Gene Structure 1959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGCTCTGAATTCTTCAGCTTTCTTCGTTCCATGTCACAATTACAATCAAATCTGTGATCTTCTTCTTTCTTCAGCTCGAACCAGATCAACTATTAAAGGACTTCAGCTTCATGGCTATGTCGTTAAATCAGGCCTTTCTCTTATCCCTCTCGTCGCTAACAACCTCATTAATTTCTACTCCAAATCACAGCTTCCGTTTGATTCTCGTCGAGCTTTTGAAGATAGCCCACAAAAAAGTTCGACGACTTGGAGTTCAATCATCTCTTGTTTTGCCCAGAACGAGCTTCCATGGATGTCACTCGAGTTTCTTAAAAAAATGATGGCGGGAAACCTTAGACCTGATGATCATGTTCTTCCATCAGCTACAAAGTCGTGTGCGATTTTGAGTCGTTGTGATATTGGTAGATCAGTTCATTGTCTATCGATGAAGACTGGGTATGATGCTGATGTGTTTGTGGGGAGTTCTTTGGTTGATATGTATGCGAAATGTGGAGAAATTGTTTATGCGAGGAAGATGTTCGACGAAATGCCTCAGAGAAATGTTGTTACTTGGAGTGGGATGATGTATGGGTATGCACAAATGGGTGAAAATGAGGAAGCTTTGTGGTTGTTTAAAGAAGCTTTGTTTGAGAATCTCGCTGTTAATGATTACTCGTTTTCGAGTGTTATTAGTGTTTGTGCAAATTCGACTCTACTTGAGTTAGGTAGACAGATTCATGGATTGAGTATTAAGTCTAGCTTTGATTCTTCTAGCTTTGTGGGAAGTTCTTTAGTCTCGTTGTATTCAAAGTGTGGTGTTCCTGAAGGAGCTTATCAAGTTTTTAACGAGGTGCCTGTGAAGAATCTCGGGATTTGGAACGCTATGCTCAAGGCGTATGCGCAACATTCACATACTCAAAAGGTTATTGAATTGTTCAAAAGGATGAAGCTTTCTGGAATGAAACCAAATTTCATAACTTTTTTGAATGTGCTCAATGCTTGTAGTCACGCGGGTCTAGTTGATGAAGGGAGATACTACTTTGATCAGATGAAAGAATCGAGGATTGAGCCGACGGATAAGCATTACGCTTCCTTGGTGGATATGTTAGGACGAGCTGGTAGATTACAAGAAGCACTTGAAGTTATCACTAATATGCCGATTGATCCCACGGAATCTGTATGGGGAGCTTTATTAACGAGTTGTACAGTCCACAAGAACACAGAGCTTGCAGCATTTGCAGCAGACAAGGTCTTCGAATTAGGACCAGTGAGTTCCGGTATGCACATTTCGTTATCCAATGCTTATGCAGCCGATGGTAGATTCGAAGACGCAGCTAAAGCTAGAAAATTGCTTCGAGACCGAGGGGAAAAGAAGGAAACAGGGCTAAGTTGGGTTGAAGAAAGGAACAAGGTTCATACATTTGCAGCTGGAGAAAGACGTCATGAGAAAAGCAAGGAGATATATGAGAAGCTGGCTGAGTTAGGGGAAGAGATGGAGAAAGCGGGTTACATTGCAGACACAAGCTATGTTCTGAGAGAAGTGGATGGTGACGAGAAGAATCAAACCATAAGGTATCATAGTGAGAGATTAGCTATTGCTTTTGGACTGATCACGTTTCCAGCTGATAGACCGATCCGAGTAATGAAGAATCTGCGTGTTTGCGGTGATTGCCATAACGCGATCAAGTTCATGTCCGTATGTACGAGACGAGTGATCATTGTGAGAGATAATAATCGGTTTCATCGGTTTGAAGATGGCAAGTGTTCTTGTAATGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

588

Amino Acids

66.15

Weight (kDa)

7.53

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	180 - 229	1.2e-06	PPR repeat family
PPR_long	PF17177	195 - 375	7e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	283 - 329	5.7e-09	PPR repeat family
PPR	PF01535	285 - 313	1e-05	PPR repeat
E_motif	PF20431	398 - 460	1.2e-10	E motif
DYW_deaminase	PF14432	496 - 588	1.5e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52630
fragaria_vesca	FvH4_5g33500 FvH4_5g33500 FvH4_5g33620
malus_domestica	MD12G1068000.v1.1 MD14G1068100.v1.1
prunus_persica	Prupe.7G066200_v2.0.a1
pyrus_communis	pycom12g06000
rosa_chinensis	RchiOBHm_Chr7g0232261
rosa_laevigata	RLG00000001359
rosa_multiflora	Rmu_sc0004136.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228480
rosa_samantha	Rh7AG426400 Rh7BG400100
rosa_wichuraiana	Rw7G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1423
Acc16I	TGCGCA	1 cut(s)	882
AccB1I	GGYRCC	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	709
AccII	CGCG	2 cut(s)	992, 1661
AciI	CCGC	4 cut(s)	326, 992, 1484, 1644
AclWI	GGATC	2 cut(s)	1139, 1609
AcsI	RAATTY	3 cut(s)	10, 685, 949
AcuI	CTGAAG	3 cut(s)	57, 89, 825
AcyI	GRCGYC	1 cut(s)	1420
AfaI	GTAC	2 cut(s)	1186, 1684
AgsI	TTSAA	9 cut(s)	221, 258, 789, 911, 919, 967, 1121, 1379, 1733
Alw21I	GWGCWC	1 cut(s)	975
Alw26I	GTCTC	3 cut(s)	781, 1332, 1681
AlwI	GGATC	2 cut(s)	1139, 1609
Ama87I	CYCGRG	2 cut(s)	302, 848
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	5 cut(s)	1211, 1220, 1289, 1313, 1406
ApoI	RAATTY	3 cut(s)	10, 685, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	1217, 1249
AseI	ATTAAT	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	1244
AsuHPI	GGTGA	3 cut(s)	599, 1541, 1658
AsuII	TTCGAA	2 cut(s)	1236, 1305
AvaI	CYCGRG	2 cut(s)	302, 848
AvaII	GGWCC	1 cut(s)	1244
BanI	GGYRCC	1 cut(s)	832
BbsI	GAAGAC	3 cut(s)	437, 1225, 1314
Bbv12I	GWGCWC	1 cut(s)	975
BbvI	GCAGC	5 cut(s)	1223, 1232, 1301, 1325, 1418
BccI	CCATC	6 cut(s)	316, 367, 1289, 1468, 1520, 1730
BclI	TGATCA	4 cut(s)	346, 1024, 1590, 1695
BcoDI	GTCTC	3 cut(s)	781, 1332, 1681
BfaI	CTAG	4 cut(s)	738, 753, 998, 1323
BisI	GCNGC	5 cut(s)	1212, 1221, 1290, 1314, 1407
BlsI	GCNGC	5 cut(s)	1213, 1222, 1291, 1315, 1408
Bme18I	GGWCC	1 cut(s)	1244
BmeT110I	CYCGRG	2 cut(s)	302, 848
BmgT120I	GGNCC	1 cut(s)	1244
BmiI	GGNNCC	1 cut(s)	834
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	3 cut(s)	437, 1225, 1314
BpmI	CTGGAG	1 cut(s)	1431
Bpu14I	TTCGAA	2 cut(s)	1236, 1305
BpuEI	CTTGAG	2 cut(s)	719, 854
Bsa29I	ATCGAT	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	1713
BsaHI	GRCGYC	1 cut(s)	1420
BsaI	GGTCTC	1 cut(s)	1332
BsaJI	CCNNGG	4 cut(s)	290, 1074, 1149, 1342
BsaWI	WCCGGW	1 cut(s)	1256
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bse1I	ACTGG	2 cut(s)	439, 1247
Bse3DI	GCAATG	1 cut(s)	1491
Bse8I	GATNNNNATC	1 cut(s)	1713
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	4 cut(s)	290, 1074, 1149, 1342
BseGI	GGATG	4 cut(s)	300, 567, 930, 1531
BseJI	GATNNNNATC	1 cut(s)	1713
BseMI	GCAATG	1 cut(s)	1491
BseMII	CTCAG	3 cut(s)	548, 1449, 1505
BseNI	ACTGG	2 cut(s)	439, 1247
BseXI	GCAGC	5 cut(s)	1223, 1232, 1301, 1325, 1418
Bsh1236I	CGCG	2 cut(s)	992, 1661
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	832
BshVI	ATCGAT	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	975
BsiHKCI	CYCGRG	2 cut(s)	302, 848
BsiSI	CCGG	1 cut(s)	1257
BsmAI	GTCTC	3 cut(s)	781, 1332, 1681
BsmBI	CGTCTC	1 cut(s)	1681
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	1332
BsoBI	CYCGRG	2 cut(s)	302, 848
Bsp119I	TTCGAA	2 cut(s)	1236, 1305
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp1407I	TGTACA	1 cut(s)	1184
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	4 cut(s)	326, 992, 1484, 1644
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	547, 1450, 1506
BspDI	ATCGAT	1 cut(s)	425
BspFNI	CGCG	2 cut(s)	992, 1661
BspHI	TCATGA	1 cut(s)	1423
BspLI	GGNNCC	1 cut(s)	834
BspPI	GGATC	2 cut(s)	1139, 1609
BspT104I	TTCGAA	2 cut(s)	1236, 1305
BspT107I	GGYRCC	1 cut(s)	832
BspTNI	GGTCTC	1 cut(s)	1332
BsrDI	GCAATG	1 cut(s)	1491
BsrGI	TGTACA	1 cut(s)	1184
BsrI	ACTGG	2 cut(s)	439, 1247
BssECI	CCNNGG	4 cut(s)	290, 1074, 1149, 1342
BssNI	GRCGYC	1 cut(s)	1420
BssT1I	CCWWGG	2 cut(s)	290, 1074
Bst4CI	ACNGT	1 cut(s)	1189
Bst6I	CTCTTC	1 cut(s)	1464
BstACI	GRCGYC	1 cut(s)	1420
BstAPI	GCANNNNNTGC	1 cut(s)	1217
BstAUI	TGTACA	1 cut(s)	1184
BstBI	TTCGAA	2 cut(s)	1236, 1305
BstC8I	GCNNGC	2 cut(s)	1209, 1455
BstDEI	CTNAG	5 cut(s)	335, 534, 1367, 1458, 1514
BstDSI	CCRYGG	2 cut(s)	290, 1149
BstF5I	GGATG	4 cut(s)	300, 567, 930, 1531
BstFNI	CGCG	2 cut(s)	992, 1661
BstHHI	GCGC	1 cut(s)	883
BstMAI	GTCTC	3 cut(s)	781, 1332, 1681
BstMWI	GCNNNNNNNGC	5 cut(s)	1217, 1220, 1289, 1319, 1650
BstUI	CGCG	2 cut(s)	992, 1661
BstV1I	GCAGC	5 cut(s)	1223, 1232, 1301, 1325, 1418
BstV2I	GAAGAC	3 cut(s)	437, 1225, 1314
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	2 cut(s)	290, 1149
BtsCI	GGATG	4 cut(s)	300, 567, 930, 1531
BtsIMutI	CAGTG	1 cut(s)	1254
Cac8I	GCNNGC	2 cut(s)	1209, 1455
CciI	TCATGA	1 cut(s)	1423
CfoI	GCGC	1 cut(s)	883
Cfr13I	GGNCC	1 cut(s)	1244
ClaI	ATCGAT	1 cut(s)	425
CseI	GACGC	1 cut(s)	1319
Csp6I	GTAC	2 cut(s)	1185, 1683
CviAII	CATG	7 cut(s)	33, 113, 291, 350, 719, 1424, 1672
CviQI	GTAC	2 cut(s)	1185, 1683
DdeI	CTNAG	5 cut(s)	335, 534, 1367, 1458, 1514
DraI	TTTAAA	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	1464
EarI	CTCTTC	1 cut(s)	1464
Eco130I	CCWWGG	2 cut(s)	290, 1074
Eco147I	AGGCCT	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	1332
Eco47I	GGWCC	1 cut(s)	1244
Eco57I	CTGAAG	3 cut(s)	57, 89, 825
Eco88I	CYCGRG	2 cut(s)	302, 848
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	290, 1074
ErhI	CCWWGG	2 cut(s)	290, 1074
Esp3I	CGTCTC	1 cut(s)	1681
FaeI	CATG	7 cut(s)	36, 116, 294, 353, 722, 1427, 1675
FalI	AAGNNNNNCTT	4 cut(s)	725, 757, 1101, 1133
FatI	CATG	7 cut(s)	32, 112, 290, 349, 718, 1423, 1671
FauI	CCCGC	3 cut(s)	319, 985, 1477
FbaI	TGATCA	4 cut(s)	346, 1024, 1590, 1695
FblI	GTMKAC	1 cut(s)	709
Fnu4HI	GCNGC	5 cut(s)	1212, 1221, 1290, 1314, 1407
FokI	GGATG	4 cut(s)	307, 574, 937, 1538
Fsp4HI	GCNGC	5 cut(s)	1212, 1221, 1290, 1314, 1407
FspBI	CTAG	4 cut(s)	738, 753, 998, 1323
FspI	TGCGCA	1 cut(s)	882
GlaI	GCGC	1 cut(s)	882
GluI	GCNGC	5 cut(s)	1212, 1221, 1290, 1314, 1407
GsuI	CTGGAG	1 cut(s)	1431
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	1257
HgaI	GACGC	1 cut(s)	1319
HhaI	GCGC	1 cut(s)	883
Hin1I	GRCGYC	1 cut(s)	1420
Hin1II	CATG	7 cut(s)	36, 116, 294, 353, 722, 1427, 1675
Hin6I	GCGC	1 cut(s)	881
HinP1I	GCGC	1 cut(s)	881
HindIII	AAGCTT	3 cut(s)	600, 621, 929
HpaII	CCGG	1 cut(s)	1257
HphI	GGTGA	3 cut(s)	599, 1541, 1658
Hpy166II	GTNNAC	2 cut(s)	710, 1192
Hpy188I	TCNGA	5 cut(s)	9, 537, 1029, 1515, 1619
Hpy188III	TCNNGA	5 cut(s)	803, 850, 936, 1337, 1424
Hpy8I	GTNNAC	2 cut(s)	710, 1192
Hpy99I	CGWCG	5 cut(s)	158, 213, 247, 527, 1057
HpyAV	CCTTC	3 cut(s)	800, 1001, 1348
HpyCH4III	ACNGT	1 cut(s)	1189
HpyCH4IV	ACGT	2 cut(s)	1420, 1595
HpyCH4V	TGCA	8 cut(s)	578, 683, 1211, 1220, 1264, 1289, 1406, 1496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1217, 1220, 1289, 1319, 1650
HpyF3I	CTNAG	5 cut(s)	335, 534, 1367, 1458, 1514
HpySE526I	ACGT	2 cut(s)	1420, 1595
Hsp92I	GRCGYC	1 cut(s)	1420
Hsp92II	CATG	7 cut(s)	36, 116, 294, 353, 722, 1427, 1675
HspAI	GCGC	1 cut(s)	881
Ksp22I	TGATCA	4 cut(s)	346, 1024, 1590, 1695
LmnI	GCTCC	2 cut(s)	809, 1166
Lsp1109I	GCAGC	5 cut(s)	1223, 1232, 1301, 1325, 1418
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	4 cut(s)	738, 753, 998, 1323
MaeII	ACGT	2 cut(s)	1420, 1595
MaeIII	GTNAC	6 cut(s)	35, 297, 547, 986, 1487, 1529
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	9 cut(s)	10, 40, 172, 498, 685, 911, 949, 1238, 1328
MlyI	GAGTC	2 cut(s)	397, 685
MnlI	CCTC	8 cut(s)	159, 176, 504, 543, 589, 823, 1035, 1337
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	9 cut(s)	96, 126, 171, 312, 615, 645, 732, 825, 1175
MslI	CAYNNNNRTG	2 cut(s)	117, 1133
MspA1I	CMGCKG	2 cut(s)	1409, 1604
MspI	CCGG	1 cut(s)	1257
MvnI	CGCG	2 cut(s)	992, 1661
MwoI	GCNNNNNNNGC	5 cut(s)	1217, 1220, 1289, 1319, 1650
NcoI	CCATGG	1 cut(s)	290
NlaIII	CATG	7 cut(s)	36, 116, 294, 353, 722, 1427, 1675
NlaIV	GGNNCC	1 cut(s)	834
NmuCI	GTSAC	4 cut(s)	35, 297, 986, 1529
NsbI	TGCGCA	1 cut(s)	882
NspV	TTCGAA	2 cut(s)	1236, 1305
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	1423
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	518
PflFI	GACNNNGTC	1 cut(s)	1229
PkrI	GCNGC	5 cut(s)	1213, 1222, 1291, 1315, 1408
PleI	GAGTC	2 cut(s)	396, 685
PpsI	GAGTC	2 cut(s)	396, 685
PshBI	ATTAAT	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	834
PspPI	GGNCC	1 cut(s)	1244
PspXI	VCTCGAGB	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	1229
PvuII	CAGCTG	2 cut(s)	1409, 1604
RsaI	GTAC	2 cut(s)	1186, 1684
RsaNI	GTAC	2 cut(s)	1185, 1683
RseI	CAYNNNNRTG	2 cut(s)	117, 1133
SaqAI	TTAA	9 cut(s)	96, 126, 171, 312, 615, 645, 732, 825, 1175
SatI	GCNGC	5 cut(s)	1212, 1221, 1290, 1314, 1407
Sau96I	GGNCC	1 cut(s)	1244
SchI	GAGTC	2 cut(s)	397, 685
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	2 cut(s)	1236, 1305
SinI	GGWCC	1 cut(s)	1244
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	117, 1133
SmlI	CTYRAG	3 cut(s)	302, 698, 869
SmoI	CTYRAG	3 cut(s)	302, 698, 869
Sse9I	AATT	9 cut(s)	10, 40, 172, 498, 685, 911, 949, 1238, 1328
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	4 cut(s)	326, 992, 1484, 1644
SspMI	CTAG	4 cut(s)	738, 753, 998, 1323
StuI	AGGCCT	1 cut(s)	135
StyI	CCWWGG	2 cut(s)	290, 1074
TaaI	ACNGT	1 cut(s)	1189
TaiI	ACGT	2 cut(s)	1423, 1598
TaqII	GACCGA	2 cut(s)	1356, 1627
TasI	AATT	9 cut(s)	10, 40, 172, 498, 685, 911, 949, 1238, 1328
TatI	WGTACW	1 cut(s)	1184
Tru1I	TTAA	9 cut(s)	96, 126, 171, 312, 615, 645, 732, 825, 1175
Tru9I	TTAA	9 cut(s)	96, 126, 171, 312, 615, 645, 732, 825, 1175
TscAI	CASTG	1 cut(s)	1254
TseFI	GTSAC	4 cut(s)	35, 297, 986, 1529
TseI	GCWGC	5 cut(s)	1211, 1220, 1289, 1313, 1406
Tsp45I	GTSAC	4 cut(s)	35, 297, 986, 1529
TspGWI	ACGGA	4 cut(s)	186, 1070, 1166, 1666
TspRI	CASTG	1 cut(s)	1254
Tth111I	GACNNNGTC	1 cut(s)	1229
VpaK11BI	GGWCC	1 cut(s)	1244
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	3 cut(s)	10, 685, 949
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	4 cut(s)	738, 753, 998, 1323
ZraI	GACGTC	1 cut(s)	1421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.