Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016074

Physical Location & Seq

Genomic Coordinates Reverse (-)

24346135 .. 24347573

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGTAGTCGATCTATAACTCGTGAACCTGAAGTCAAGACTTGGTACCATTATGATGTGTTTGTGGCGAGTTCTGTGGTTGACATTGGGATGATTTTTGGGTATACTCAAGCCGGGGAGGCCGAGGAGGCTTTGGTGCTTTTTAAGCAGGCGTTGCTTGAGGATTTCGATGTTAATGATTTTACATTTTCAAGTGTTGTGAGGGTCTGCGATAGTTGGACGCTGCATGATTTGGGAAGGCAGATACATGGCTTGTGCTTTAAGACGAGTTTTGTTGGGAGTTCATTGGTGTCGTTGTACTCCAAGTGTGGAGTTATTGAAGGGGCTTATCGAGTTTTTGATGAGGTGTCTGTTATGAATGTTGGAATGTGGAATGCAATGATGATAGCTTGCGCGCAGCACGTGCACACGGAGAAGACTTTTGATCTGTTTAAGCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

148

Amino Acids

16.63

Weight (kDa)

5.07

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52630
fragaria_vesca	FvH4_5g33500 FvH4_5g33500 FvH4_5g33620
malus_domestica	MD12G1068000.v1.1 MD14G1068100.v1.1
prunus_persica	Prupe.7G066200_v2.0.a1
pyrus_communis	pycom12g06000
rosa_chinensis	RchiOBHm_Chr7g0232261
rosa_laevigata	RLG00000001359
rosa_multiflora	Rmu_sc0004136.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228480
rosa_samantha	Rh7AG426400 Rh7BG400100
rosa_wichuraiana	Rw7G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	403
AfaI	GTAC	2 cut(s)	47, 299
AgsI	TTSAA	2 cut(s)	192, 320
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	408
Alw44I	GTGCAC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	2 cut(s)	223, 397
Asp718I	GGTACC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	395, 397
AsuC2I	CCSGG	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	21
BbrPI	CACGTG	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	210, 409
BcnI	CCSGG	1 cut(s)	115
BglI	GCCNNNNNGGC	2 cut(s)	119, 128
BisI	GCNGC	2 cut(s)	224, 398
BlsI	GCNGC	2 cut(s)	225, 399
Bme1390I	CCNGG	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	422
BpuEI	CTTGAG	2 cut(s)	93, 179
BpuMI	CCSGG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	114, 123
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	114, 123
BseGI	GGATG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	384
BsePI	GCGCGC	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	210, 409
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	11, 424
BspANI	GGCC	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	114, 123
BssHII	GCGCGC	1 cut(s)	393
BssMI	GATC	2 cut(s)	11, 424
BssNAI	GTATAC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	21
Bst1107I	GTATAC	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	21
BstAPI	GCANNNNNTGC	2 cut(s)	154, 403
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	150, 391, 395
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	2 cut(s)	395, 397
BstKTI	GATC	2 cut(s)	14, 427
BstMBI	GATC	2 cut(s)	11, 424
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 128, 145, 154, 403
BstSCI	CCNGG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	210, 409
BstV2I	GAAGAC	1 cut(s)	422
BstZ17I	GTATAC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	150, 391, 395
CfoI	GCGC	2 cut(s)	395, 397
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	46, 298
CviAII	CATG	2 cut(s)	227, 248
CviJI	RGCY	6 cut(s)	113, 122, 131, 252, 326, 389
CviKI_1	RGCY	6 cut(s)	113, 122, 131, 252, 326, 389
CviQI	GTAC	2 cut(s)	46, 298
DpnI	GATC	2 cut(s)	13, 426
DpnII	GATC	2 cut(s)	11, 424
Eco57I	CTGAAG	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	403
FaeI	CATG	2 cut(s)	230, 251
FaiI	YATR	6 cut(s)	17, 54, 105, 228, 249, 356
FatI	CATG	2 cut(s)	226, 247
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	224, 398
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	224, 398
GlaI	GCGC	2 cut(s)	394, 396
GluI	GCNGC	2 cut(s)	224, 398
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	395, 397
Hin1II	CATG	2 cut(s)	230, 251
Hin6I	GCGC	2 cut(s)	393, 395
HinP1I	GCGC	2 cut(s)	393, 395
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	4 cut(s)	26, 82, 105, 406
Hpy188III	TCNNGA	2 cut(s)	23, 37
Hpy8I	GTNNAC	4 cut(s)	26, 82, 105, 406
HpyAV	CCTTC	2 cut(s)	231, 314
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	226, 377, 406
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 128, 145, 154, 403
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	230, 251
HspAI	GCGC	2 cut(s)	393, 395
KpnI	GGTACC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	11, 424
LpnPI	CCDG	3 cut(s)	42, 127, 134
Lsp1109I	GCAGC	2 cut(s)	210, 409
MaeII	ACGT	1 cut(s)	402
MalI	GATC	2 cut(s)	13, 426
MboI	GATC	2 cut(s)	11, 424
MboII	GAAGA	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	408
MmeI	TCCRAC	2 cut(s)	197, 343
MnlI	CCTC	6 cut(s)	112, 118, 121, 154, 195, 337
MseI	TTAA	4 cut(s)	144, 174, 261, 432
MslI	CAYNNNNRTG	2 cut(s)	54, 89
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	119, 128, 145, 154, 403
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	11, 424
NlaIII	CATG	2 cut(s)	230, 251
NlaIV	GGNNCC	1 cut(s)	47
NmeAIII	GCCGAG	1 cut(s)	148
PauI	GCGCGC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	225, 399
PmaCI	CACGTG	1 cut(s)	403
PmlI	CACGTG	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	47
PteI	GCGCGC	1 cut(s)	393
RsaI	GTAC	2 cut(s)	47, 299
RsaNI	GTAC	2 cut(s)	46, 298
RseI	CAYNNNNRTG	2 cut(s)	54, 89
SaqAI	TTAA	4 cut(s)	144, 174, 261, 432
SatI	GCNGC	2 cut(s)	224, 398
Sau3AI	GATC	2 cut(s)	11, 424
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	4 cut(s)	31, 348, 391, 405
SmiMI	CAYNNNNRTG	2 cut(s)	54, 89
SmlI	CTYRAG	2 cut(s)	108, 158
SmoI	CTYRAG	2 cut(s)	108, 158
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	3 cut(s)	10, 168, 331
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	4 cut(s)	144, 174, 261, 432
Tru9I	TTAA	4 cut(s)	144, 174, 261, 432
TseI	GCWGC	2 cut(s)	223, 397
TspDTI	ATGAA	2 cut(s)	273, 371
TspGWI	ACGGA	1 cut(s)	425
VneI	GTGCAC	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.