Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016074

Physical Location & Seq

Genomic Coordinates Forward (+)

57242499 .. 57245836

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG426400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATTTACGGGTACACTCAGGCCGGGGAGGCGGAGGAGGCTTTGGTGCTTTTTAAACAAGCATTGCTTGAGGATTTGGACGTCAATGATTTTACATTTTCGAGTGTTGTGAGGGTTTGCGGCAGTTCGACGCTTCTTGAATTGGGGAGGCAAATACATGGCTTGTGCTTCAAGACCAGTTTTGATTCGTCGAGTTTTGTTGGTAGTTCTTTGGTGTCCTTGTACTCTAAGTGTGGAGTGATTGAAGGAGCTTATCGAGTTTTTGATGAGATACCTGTTAAAAATCTTGGGATGTGGAATGCAATGCTGATAGCCTGCGCGCAGCACGTGCACACGAATAAGACTTTCGATCTGTTTAAAAAGATGGAAAGTACTGGGATGAAGCCGAATTTTATTACATTTTTGTGTGCGCTCTATGCTTGTAGCCATGCTGGGCTAGTTGAAAGGGGGCAGCATTACTTTCGGCTCATGAAAGAATATGGGATTGAGCCAGGGGAAATGCATTATGCTTCCTTGGTGGACTTGCTTGGCCGCGCTGGAAAGTTGCAGGATGCAGTCAAAATAATAGAGGGGATGCCTATTGAACCCACAGAATCTGTATGGGGAGCTTTGTTAACAGGTTGTCGACTCCATGGAGACACTGAATTGGCAGCTTCCGTGGCTGACAAAATCTTTGAGTTGGGTTCTAACAAGAAAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

234

Amino Acids

25.81

Weight (kDa)

5.66

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	6 - 184	2.9e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	97 - 141	2.3e-06	PPR repeat family
PPR_long	PF17177	102 - 192	1e-06	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52630
fragaria_vesca	FvH4_5g33500 FvH4_5g33500 FvH4_5g33620
malus_domestica	MD12G1068000.v1.1 MD14G1068100.v1.1
prunus_persica	Prupe.7G066200_v2.0.a1
pyrus_communis	pycom12g06000
rosa_chinensis	RchiOBHm_Chr7g0232261
rosa_laevigata	RLG00000001359
rosa_multiflora	Rmu_sc0004136.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228480
rosa_samantha	Rh7AG426400 Rh7BG400100
rosa_wichuraiana	Rw7G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	2 cut(s)	320, 534
AciI	CCGC	3 cut(s)	32, 120, 532
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	388
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	3 cut(s)	14, 224, 373
AgsI	TTSAA	5 cut(s)	140, 172, 245, 443, 584
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	3 cut(s)	251, 608, 653
AluI	AGCT	3 cut(s)	251, 608, 653
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	630
Alw44I	GTGCAC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	21, 529
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	322, 451, 650
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AspLEI	GCGC	4 cut(s)	320, 322, 412, 536
AsuC2I	CCSGG	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	334, 463, 662
BccI	CCATC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	5 cut(s)	121, 323, 452, 532, 651
BlsI	GCNGC	5 cut(s)	122, 324, 453, 533, 652
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	25, 492
BmrFI	CCNGG	2 cut(s)	25, 492
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	541, 564
BmuI	ACTGGG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	5 cut(s)	24, 491, 513, 631, 657
Bse1I	ACTGG	2 cut(s)	177, 379
Bse3DI	GCAATG	2 cut(s)	62, 309
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	5 cut(s)	24, 491, 513, 631, 657
BseGI	GGATG	4 cut(s)	297, 384, 556, 579
BseMI	GCAATG	2 cut(s)	62, 309
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	177, 379
BsePI	GCGCGC	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	334, 463, 662
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	2 cut(s)	320, 534
BshFI	GGCC	2 cut(s)	23, 531
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	23, 531
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	3 cut(s)	32, 120, 532
BspANI	GGCC	2 cut(s)	23, 531
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	320, 534
BspHI	TCATGA	1 cut(s)	468
BsrDI	GCAATG	2 cut(s)	62, 309
BsrI	ACTGG	2 cut(s)	177, 379
BssECI	CCNNGG	5 cut(s)	24, 491, 513, 631, 657
BssHII	GCGCGC	1 cut(s)	318
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	513, 631
Bst2UI	CCWGG	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	316, 320
BstDEI	CTNAG	2 cut(s)	18, 228
BstDSI	CCRYGG	2 cut(s)	631, 657
BstF5I	GGATG	4 cut(s)	297, 384, 556, 579
BstFNI	CGCG	2 cut(s)	320, 534
BstHHI	GCGC	4 cut(s)	320, 322, 412, 536
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 38, 328, 416, 659
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	23, 490
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	2 cut(s)	320, 534
BstV1I	GCAGC	3 cut(s)	334, 463, 662
BsuRI	GGCC	2 cut(s)	23, 531
BtgI	CCRYGG	2 cut(s)	631, 657
BtsCI	GGATG	4 cut(s)	297, 384, 556, 579
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	316, 320
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	4 cut(s)	320, 322, 412, 536
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	13, 223, 372
CviAII	CATG	4 cut(s)	158, 428, 469, 632
CviQI	GTAC	3 cut(s)	13, 223, 372
DdeI	CTNAG	2 cut(s)	18, 228
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DraI	TTTAAA	2 cut(s)	55, 358
EaeI	YGGCCR	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	513, 631
Eco72I	CACGTG	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	513, 631
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	513, 631
FaeI	CATG	4 cut(s)	161, 431, 472, 635
FaiI	YATR	8 cut(s)	159, 417, 429, 470, 480, 507, 601, 633
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	4 cut(s)	157, 427, 468, 631
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	121, 323, 452, 532, 651
FokI	GGATG	4 cut(s)	304, 391, 563, 586
Fsp4HI	GCNGC	5 cut(s)	121, 323, 452, 532, 651
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	4 cut(s)	319, 321, 411, 535
GluI	GCNGC	5 cut(s)	121, 323, 452, 532, 651
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	23, 531
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	4 cut(s)	320, 322, 412, 536
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	161, 431, 472, 635
Hin6I	GCGC	4 cut(s)	318, 320, 410, 534
HinP1I	GCGC	4 cut(s)	318, 320, 410, 534
HincII	GTYRAC	2 cut(s)	615, 626
HindII	GTYRAC	2 cut(s)	615, 626
HinfI	GANTC	3 cut(s)	185, 593, 627
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	5 cut(s)	15, 331, 520, 615, 626
Hpy188III	TCNNGA	3 cut(s)	137, 172, 469
Hpy8I	GTNNAC	5 cut(s)	15, 331, 520, 615, 626
Hpy99I	CGWCG	2 cut(s)	133, 193
HpyAV	CCTTC	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	81, 327
HpyCH4V	TGCA	5 cut(s)	302, 331, 502, 547, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 38, 328, 416, 659
HpyF3I	CTNAG	2 cut(s)	18, 228
HpySE526I	ACGT	2 cut(s)	81, 327
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	161, 431, 472, 635
HspAI	GCGC	4 cut(s)	318, 320, 410, 534
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	248, 605
Lsp1109I	GCAGC	3 cut(s)	334, 463, 662
LweI	GCATC	2 cut(s)	541, 564
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	81, 327
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	3 cut(s)	140, 388, 644
MlyI	GAGTC	1 cut(s)	621
MnlI	CCTC	7 cut(s)	22, 28, 31, 64, 105, 141, 562
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	4 cut(s)	54, 279, 357, 614
MslI	CAYNNNNRTG	1 cut(s)	403
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	25, 492
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	2 cut(s)	320, 534
MwoI	GCNNNNNNNGC	5 cut(s)	29, 38, 328, 416, 659
NciI	CCSGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	161, 431, 472, 635
NsiI	ATGCAT	1 cut(s)	504
PagI	TCATGA	1 cut(s)	468
PauI	GCGCGC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	185, 593
PkrI	GCNGC	5 cut(s)	122, 324, 453, 533, 652
PleI	GAGTC	1 cut(s)	621
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	621
Ppu21I	YACGTR	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	490
PspCI	CACGTG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	596
PteI	GCGCGC	1 cut(s)	318
RsaI	GTAC	3 cut(s)	14, 224, 373
RsaNI	GTAC	3 cut(s)	13, 223, 372
RseI	CAYNNNNRTG	1 cut(s)	403
SalI	GTCGAC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	54, 279, 357, 614
SatI	GCNGC	5 cut(s)	121, 323, 452, 532, 651
Sau3AI	GATC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	25, 492
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	84, 253, 277, 330, 610, 622, 655
SfaNI	GCATC	2 cut(s)	541, 564
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	140, 388, 644
SsiI	CCGC	3 cut(s)	32, 120, 532
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	23, 490
StyI	CCWWGG	2 cut(s)	513, 631
TaiI	ACGT	2 cut(s)	84, 330
TaqI	TCGA	6 cut(s)	101, 128, 191, 256, 348, 625
TasI	AATT	3 cut(s)	140, 388, 644
TatI	WGTACW	2 cut(s)	222, 371
TauI	GCSGC	2 cut(s)	123, 534
TfiI	GAWTC	2 cut(s)	185, 593
Tru1I	TTAA	4 cut(s)	54, 279, 357, 614
Tru9I	TTAA	4 cut(s)	54, 279, 357, 614
TscAI	CASTG	1 cut(s)	646
TseI	GCWGC	3 cut(s)	322, 451, 650
TspDTI	ATGAA	2 cut(s)	395, 485
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	1 cut(s)	646
VneI	GTGCAC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	625
XspI	CTAG	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	373
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.