Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016074

Physical Location & Seq

Genomic Coordinates Forward (+)

44388827 .. 44393762

Gene Structure 4936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG400100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGCTCGGCACCTCATTGCGCCCCGACGACCATATATACCCCAGTGTCACCAAGTCCTGCGCAATTCTGAACCGCCCTGATGTTGGGCAGTCTATACATTGCCTTGCCGTCAAGACTGGGTATCATGTTGATGTGTTTGTGGCAAGTTCTGTTGTTGACATGTATGCGAAATGTGGGCAGATAAGACGTGCCCGCAACATGTTCGATGAAATGCCTCACAAGAATGTGGTTTCTTGGAGTGGGATGATTTACGGGTACACTCAAGCCGGGGAGGCGGAGGAGGCTTTAGTGCTTTTTAAACAAGCATTGCTTGAGGGTTTGGACGTCAATGATTTTACATTTTCGAGTGTTGTAAGGGTTTGCGGCAGTTCGACGCTTCTTGAATTGGGGAGGCAAATACATGGCTTGTGCTTCAAGACCAGTTTTAATTCGTCAAGTTTTGTTGGTAGTTCTTTGGTGTCATTGTACTCTAAGTGTGGAGTGATTGAAGGAGCTTATCGAGTTTTTGATGAGATACCTGTTAAAAATCTTGGGATGTGGAATGCAATGCTGATAGCCTGCGCGCAGCACGTGCACACGAATAAGACTTTCGATCTGTTTAAACAGATGGAAAGTACTGGGATGAAGCCGAATTTTATTACATTTTTGTGTGTGCTCTATGCTTGTAGTCATGCTGGGCTAGTTGAAAAGGGGCACCATTACTTTCGGCTCATGAAAGAGTATGGGATTGAGCCAGGGGAAATGCATTATGCTTCCTTGGTGGACTTGCTTGGCCGCGCTGGAAAGTTGCAGGATGCAGTCAAAATAATAGAGGGGATGCCTATTGAACCCACAGAATCTGTATGGGGAGCTTTGTTAACAGGTTGTCGACTCCATGGAGACACTGAATTGGCAGCTTCCGTGGCTGACAAAATCTTTGAGTTGGGTTCTGTAAGCTCTGGGATGCATGTGCTCGTATCTAATGCTTATGCTGCTGCTGGGAGATTCGAGGAAGCAGCAAAAGCTAGGAAGATGCTAAGAGACCGAGGGGTGAAAAAGGAGACAGGTTTGAGTTGGGTTGAGGAAGGAAACAAGATTCACACATTCGCTGCTGGGGACAGGACTCACATGTGGACTAAAGAGATTTATCAGAAGTTGGAAGAATTAGGGGAGGAAATGGAGAGGGCTGGTTATGTTGCAGACACAAGTTTTGTGCTTAGAGAAGTAAATAATGAAGAGAAAAACCAGACGATTAGGTATCATAGTGAAAGACTAGCCGTGGCATTTGGCCTTTTAACCATTCCTACAGATAGGCCAATCAGGATTATGAAGAACTTGCGTATTTGTGGTGATTGTCATACTGCTATCAAGTTTATGTCCAAGTGTTCAGGAAGGGTTATCATTGTTAGGGATAACAATAGGTTTCATAGGTTTGAGGATGGAAAATGCACTTGTGGAGATTATTGGAGTCGTTTAAGGTACCGGAAGCTTGTGGAATGTGGATCAAAAGAGAGAAAATTGCCATTTCAAGAGAAACATGTTAAGCAGCAGGCATCGATTCTTGGAAACATGGAAGGTTTTGGGGTAACAAAGAGTTTCATAGCAAAGGAGAGGGCTGACTGTGACGATGGCAATGGGTTCCCTGTGAGCGATGACTGTGATTATAGCAATGGTGTCCCAGCAGTGGTTGAGTTTGGAGTGGGAAGAGGATACTTGACACAAATGCTGGCGGATTGTTATGGCATTAAAAGGGTCTTTTTGGTTGAAAGGAAGTCATACAAGCTGAAGGGATACGTTGCGAGTAAAGGAGAAATTGGTTTGCCAGATACCATTGTTGCGAACCGAGGGTCTAGAAAGGCTTCGCGGGCGGTTGCCACCACCTCGGCATTGTTGACCAGATTAGCCGCATCTTCCATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

633

Amino Acids

70.33

Weight (kDa)

8.55

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 121	2.9e-06	PPR repeat family
PPR_2	PF13041	178 - 223	1.9e-06	PPR repeat family
PPR_long	PF17177	184 - 273	1.1e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	292 - 354	1.2e-11	E motif
Eplus_motif	PF20430	359 - 386	4.7e-06	E+ motif
DYW_deaminase	PF14432	390 - 482	3.4e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52630
fragaria_vesca	FvH4_5g33500 FvH4_5g33500 FvH4_5g33620
malus_domestica	MD12G1068000.v1.1 MD14G1068100.v1.1
prunus_persica	Prupe.7G066200_v2.0.a1
pyrus_communis	pycom12g06000
rosa_chinensis	RchiOBHm_Chr7g0232261
rosa_laevigata	RLG00000001359
rosa_multiflora	Rmu_sc0004136.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228480
rosa_samantha	Rh7AG426400 Rh7BG400100
rosa_wichuraiana	Rw7G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	327
Acc16I	TGCGCA	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	1458
AccB1I	GGYRCC	3 cut(s)	8, 693, 1458
AccI	GTMKAC	1 cut(s)	868
AccII	CGCG	3 cut(s)	563, 777, 1843
AciI	CCGC	9 cut(s)	73, 193, 275, 363, 775, 1709, 1843, 1847, 1884
AclWI	GGATC	1 cut(s)	1489
AcoI	YGGCCR	1 cut(s)	772
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	1784
AcvI	CACGTG	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	4 cut(s)	257, 467, 616, 1460
AfiI	CCNNNNNNNGG	2 cut(s)	83, 1663
AflIII	ACRYGT	4 cut(s)	159, 198, 1107, 1516
AgsI	TTSAA	7 cut(s)	383, 415, 488, 686, 827, 1508, 1745
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	7 cut(s)	494, 851, 896, 936, 1004, 1468, 1762
AluI	AGCT	7 cut(s)	494, 851, 896, 936, 1004, 1468, 1762
Alw21I	GWGCWC	3 cut(s)	576, 657, 954
Alw26I	GTCTC	3 cut(s)	873, 1014, 1034
Alw44I	GTGCAC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	1489
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	3 cut(s)	772, 1267, 1292
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	7 cut(s)	565, 893, 971, 974, 995, 1088, 1525
ApoI	RAATTY	1 cut(s)	631
ArsI	GACNNNNNNTTYG	6 cut(s)	899, 931, 1172, 1204, 1811, 1843
Asp700I	GAANNNNTTC	1 cut(s)	1837
Asp718I	GGTACC	1 cut(s)	1458
AspLEI	GCGC	5 cut(s)	21, 62, 563, 565, 779
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	40, 1042, 1340
BaeGI	GKGCMC	3 cut(s)	193, 576, 696
BaeI	ACNNNNGTAYC	2 cut(s)	1797, 1830
BanI	GGYRCC	3 cut(s)	8, 693, 1458
BbrPI	CACGTG	1 cut(s)	571
Bbv12I	GWGCWC	3 cut(s)	576, 657, 954
BbvI	GCAGC	7 cut(s)	577, 905, 958, 961, 1007, 1075, 1537
BccI	CCATC	3 cut(s)	601, 1412, 1601
BceAI	ACGGC	2 cut(s)	92, 1241
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	2 cut(s)	1682, 1763
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	873, 1014, 1034
BfaI	CTAG	5 cut(s)	680, 1005, 1253, 1830, 1900
BfmI	CTRYAG	1 cut(s)	1284
BfuI	GTATCC	2 cut(s)	1682, 1763
BglI	GCCNNNNNGGC	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	268, 735
BmgBI	CACGTC	1 cut(s)	188
BmiI	GGNNCC	4 cut(s)	10, 695, 1460, 1619
BmrFI	CCNGG	2 cut(s)	268, 735
BmrI	ACTGGG	3 cut(s)	36, 126, 627
BmsI	GCATC	6 cut(s)	784, 807, 933, 1002, 1541, 1895
BmuI	ACTGGG	3 cut(s)	36, 126, 627
BpuEI	CTTGAG	2 cut(s)	246, 332
BpuMI	CCSGG	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	1535
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	1014
BsaJI	CCNNGG	9 cut(s)	267, 734, 756, 874, 900, 1024, 1257, 1822, 1860
BsaWI	WCCGGW	1 cut(s)	1461
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 1663
Bse1I	ACTGG	4 cut(s)	42, 121, 420, 622
Bse3DI	GCAATG	6 cut(s)	14, 97, 305, 552, 1618, 1654
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	1535
BseDI	CCNNGG	9 cut(s)	267, 734, 756, 874, 900, 1024, 1257, 1822, 1860
BseGI	GGATG	7 cut(s)	249, 540, 627, 799, 822, 948, 1423
BseLI	CCNNNNNNNGG	2 cut(s)	83, 1663
BseMI	GCAATG	6 cut(s)	14, 97, 305, 552, 1618, 1654
BseNI	ACTGG	4 cut(s)	42, 121, 420, 622
BsePI	GCGCGC	1 cut(s)	561
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	3 cut(s)	193, 576, 696
BseXI	GCAGC	7 cut(s)	577, 905, 958, 961, 1007, 1075, 1537
BseYI	CCCAGC	4 cut(s)	674, 977, 1091, 1657
Bsh1236I	CGCG	3 cut(s)	563, 777, 1843
BshFI	GGCC	3 cut(s)	774, 1269, 1294
BshNI	GGYRCC	3 cut(s)	8, 693, 1458
BshVI	ATCGAT	1 cut(s)	1535
BsiHKAI	GWGCWC	3 cut(s)	576, 657, 954
BsiSI	CCGG	2 cut(s)	267, 1462
BslFI	GGGAC	2 cut(s)	1109, 1640
BslI	CCNNNNNNNGG	2 cut(s)	83, 1663
BsmAI	GTCTC	3 cut(s)	873, 1014, 1034
BsmFI	GGGAC	2 cut(s)	1109, 1640
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	774, 1269, 1294
Bso31I	GGTCTC	1 cut(s)	1014
Bsp1286I	GDGCHC	5 cut(s)	193, 576, 657, 696, 954
Bsp143I	GATC	2 cut(s)	592, 1481
Bsp19I	CCATGG	1 cut(s)	874
BspACI	CCGC	9 cut(s)	73, 193, 275, 363, 775, 1709, 1843, 1847, 1884
BspANI	GGCC	3 cut(s)	774, 1269, 1294
BspDI	ATCGAT	1 cut(s)	1535
BspFNI	CGCG	3 cut(s)	563, 777, 1843
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	4 cut(s)	10, 695, 1460, 1619
BspPI	GGATC	1 cut(s)	1489
BspT107I	GGYRCC	3 cut(s)	8, 693, 1458
BspTNI	GGTCTC	1 cut(s)	1014
BsrDI	GCAATG	6 cut(s)	14, 97, 305, 552, 1618, 1654
BsrI	ACTGG	4 cut(s)	42, 121, 420, 622
BssECI	CCNNGG	9 cut(s)	267, 734, 756, 874, 900, 1024, 1257, 1822, 1860
BssHII	GCGCGC	1 cut(s)	561
BssMI	GATC	2 cut(s)	592, 1481
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	756, 874
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	1601, 1637
Bst6I	CTCTTC	2 cut(s)	1209, 1678
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	6 cut(s)	193, 559, 563, 1530, 1707, 1845
BstDEI	CTNAG	3 cut(s)	471, 1016, 1196
BstDSI	CCRYGG	3 cut(s)	874, 900, 1257
BstF5I	GGATG	7 cut(s)	249, 540, 627, 799, 822, 948, 1423
BstFNI	CGCG	3 cut(s)	563, 777, 1843
BstHHI	GCGC	5 cut(s)	21, 62, 563, 565, 779
BstKTI	GATC	2 cut(s)	595, 1484
BstMAI	GTCTC	3 cut(s)	873, 1014, 1034
BstMBI	GATC	2 cut(s)	592, 1481
BstMWI	GCNNNNNNNGC	7 cut(s)	272, 281, 571, 902, 971, 1001, 1844
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	5 cut(s)	163, 202, 950, 1111, 1520
BstSCI	CCNGG	2 cut(s)	266, 733
BstSFI	CTRYAG	1 cut(s)	1284
BstSLI	GKGCMC	3 cut(s)	193, 576, 696
BstUI	CGCG	3 cut(s)	563, 777, 1843
BstV1I	GCAGC	7 cut(s)	577, 905, 958, 961, 1007, 1075, 1537
Bsu15I	ATCGAT	1 cut(s)	1535
BsuI	GTATCC	2 cut(s)	1682, 1763
BsuRI	GGCC	3 cut(s)	774, 1269, 1294
BsuTUI	ATCGAT	1 cut(s)	1535
BtgI	CCRYGG	3 cut(s)	874, 900, 1257
BtgZI	GCGATG	1 cut(s)	1644
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	7 cut(s)	249, 540, 627, 799, 822, 948, 1423
BtsI	GCAGTG	1 cut(s)	1668
BtsIMutI	CAGTG	3 cut(s)	49, 882, 1668
Cac8I	GCNNGC	6 cut(s)	193, 559, 563, 1530, 1707, 1845
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	1 cut(s)	711
CfoI	GCGC	5 cut(s)	21, 62, 563, 565, 779
ClaI	ATCGAT	1 cut(s)	1535
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	4 cut(s)	256, 466, 615, 1459
CviQI	GTAC	4 cut(s)	256, 466, 615, 1459
DdeI	CTNAG	3 cut(s)	471, 1016, 1196
DpnI	GATC	2 cut(s)	594, 1483
DpnII	GATC	2 cut(s)	592, 1481
DraI	TTTAAA	2 cut(s)	298, 601
EaeI	YGGCCR	1 cut(s)	772
Eam1104I	CTCTTC	2 cut(s)	1209, 1678
EarI	CTCTTC	2 cut(s)	1209, 1678
EciI	GGCGGA	2 cut(s)	290, 1724
Eco130I	CCWWGG	2 cut(s)	756, 874
Eco31I	GGTCTC	1 cut(s)	1014
Eco57I	CTGAAG	1 cut(s)	1784
Eco72I	CACGTG	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	756, 874
EcoT22I	ATGCAT	2 cut(s)	747, 948
ErhI	CCWWGG	2 cut(s)	756, 874
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	2 cut(s)	1109, 1640
FauI	CCCGC	2 cut(s)	200, 1836
FblI	GTMKAC	1 cut(s)	868
FokI	GGATG	7 cut(s)	256, 547, 634, 806, 829, 955, 1430
FspBI	CTAG	5 cut(s)	680, 1005, 1253, 1830, 1900
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	5 cut(s)	20, 61, 562, 564, 778
GsaI	CCCAGC	4 cut(s)	678, 981, 1095, 1661
HaeIII	GGCC	3 cut(s)	774, 1269, 1294
HapII	CCGG	2 cut(s)	267, 1462
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	5 cut(s)	21, 62, 563, 565, 779
Hin1I	GRCGYC	1 cut(s)	324
Hin6I	GCGC	5 cut(s)	19, 60, 561, 563, 777
HinP1I	GCGC	5 cut(s)	19, 60, 561, 563, 777
HincII	GTYRAC	4 cut(s)	157, 858, 869, 1872
HindII	GTYRAC	4 cut(s)	157, 858, 869, 1872
HindIII	AAGCTT	1 cut(s)	1466
HinfI	GANTC	7 cut(s)	836, 870, 984, 1075, 1102, 1447, 1537
HpaI	GTTAAC	1 cut(s)	858
HpaII	CCGG	2 cut(s)	267, 1462
HphI	GGTGA	3 cut(s)	40, 1042, 1340
Hpy166II	GTNNAC	8 cut(s)	157, 258, 574, 763, 858, 869, 1113, 1872
Hpy188I	TCNGA	2 cut(s)	69, 1131
Hpy188III	TCNNGA	8 cut(s)	112, 380, 415, 712, 1300, 1368, 1508, 1830
Hpy8I	GTNNAC	8 cut(s)	157, 258, 574, 763, 858, 869, 1113, 1872
Hpy99I	CGWCG	2 cut(s)	29, 376
HpyAV	CCTTC	5 cut(s)	482, 1058, 1365, 1547, 1759
HpyCH4III	ACNGT	2 cut(s)	1601, 1637
HpyCH4IV	ACGT	4 cut(s)	187, 324, 570, 1773
HpyCH4V	TGCA	8 cut(s)	545, 574, 745, 790, 797, 946, 1178, 1428
HpyF10VI	GCNNNNNNNGC	7 cut(s)	272, 281, 571, 902, 971, 1001, 1844
HpyF3I	CTNAG	3 cut(s)	471, 1016, 1196
HpySE526I	ACGT	4 cut(s)	187, 324, 570, 1773
Hsp92I	GRCGYC	1 cut(s)	324
HspAI	GCGC	5 cut(s)	19, 60, 561, 563, 777
KpnI	GGTACC	1 cut(s)	1462
KspAI	GTTAAC	1 cut(s)	858
Kzo9I	GATC	2 cut(s)	592, 1481
LmnI	GCTCC	2 cut(s)	491, 848
Lsp1109I	GCAGC	7 cut(s)	577, 905, 958, 961, 1007, 1075, 1537
LweI	GCATC	6 cut(s)	784, 807, 933, 1002, 1541, 1895
MaeI	CTAG	5 cut(s)	680, 1005, 1253, 1830, 1900
MaeII	ACGT	4 cut(s)	187, 324, 570, 1773
MaeIII	GTNAC	3 cut(s)	46, 1564, 1601
MalI	GATC	2 cut(s)	594, 1483
MboI	GATC	2 cut(s)	592, 1481
MboII	GAAGA	6 cut(s)	1021, 1151, 1226, 1321, 1695, 1881
MhlI	GDGCHC	5 cut(s)	193, 576, 657, 696, 954
MluCI	AATT	8 cut(s)	63, 383, 427, 631, 887, 1142, 1496, 1791
MlyI	GAGTC	3 cut(s)	864, 1096, 1456
MmeI	TCCRAC	1 cut(s)	1116
Mph1103I	ATGCAT	2 cut(s)	747, 948
MroXI	GAANNNNTTC	1 cut(s)	1837
MseI	TTAA	9 cut(s)	297, 426, 522, 600, 857, 1274, 1454, 1521, 1725
MslI	CAYNNNNRTG	3 cut(s)	129, 222, 646
MspI	CCGG	2 cut(s)	267, 1462
MspR9I	CCNGG	2 cut(s)	268, 735
MssI	GTTTAAAC	1 cut(s)	601
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	3 cut(s)	563, 777, 1843
MwoI	GCNNNNNNNGC	7 cut(s)	272, 281, 571, 902, 971, 1001, 1844
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	874
NdeII	GATC	2 cut(s)	592, 1481
NlaIV	GGNNCC	4 cut(s)	10, 695, 1460, 1619
NmeAIII	GCCGAG	1 cut(s)	1841
NmuCI	GTSAC	2 cut(s)	46, 1601
NsbI	TGCGCA	1 cut(s)	61
NsiI	ATGCAT	2 cut(s)	747, 948
NspI	RCATGY	5 cut(s)	163, 202, 950, 1111, 1520
PagI	TCATGA	1 cut(s)	711
PauI	GCGCGC	1 cut(s)	561
PciI	ACATGT	4 cut(s)	159, 198, 1107, 1516
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	1837
PfeI	GAWTC	4 cut(s)	836, 984, 1075, 1537
PleI	GAGTC	3 cut(s)	864, 1096, 1455
PmaCI	CACGTG	1 cut(s)	571
PmeI	GTTTAAAC	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	3 cut(s)	864, 1096, 1455
Ppu21I	YACGTR	1 cut(s)	571
PscI	ACATGT	4 cut(s)	159, 198, 1107, 1516
Psp6I	CCWGG	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	571
PspFI	CCCAGC	4 cut(s)	674, 977, 1091, 1657
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	4 cut(s)	10, 695, 1460, 1619
PstNI	CAGNNNCTG	1 cut(s)	839
PteI	GCGCGC	1 cut(s)	561
RsaI	GTAC	4 cut(s)	257, 467, 616, 1460
RsaNI	GTAC	4 cut(s)	256, 466, 615, 1459
RseI	CAYNNNNRTG	3 cut(s)	129, 222, 646
SalI	GTCGAC	1 cut(s)	867
SaqAI	TTAA	9 cut(s)	297, 426, 522, 600, 857, 1274, 1454, 1521, 1725
Sau3AI	GATC	2 cut(s)	592, 1481
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	3 cut(s)	864, 1096, 1456
ScrFI	CCNGG	2 cut(s)	268, 735
SduI	GDGCHC	5 cut(s)	193, 576, 657, 696, 954
SfaNI	GCATC	6 cut(s)	784, 807, 933, 1002, 1541, 1895
SfcI	CTRYAG	1 cut(s)	1284
SmiMI	CAYNNNNRTG	3 cut(s)	129, 222, 646
SmlI	CTYRAG	2 cut(s)	261, 311
SmoI	CTYRAG	2 cut(s)	261, 311
Sse9I	AATT	8 cut(s)	63, 383, 427, 631, 887, 1142, 1496, 1791
SsiI	CCGC	9 cut(s)	73, 193, 275, 363, 775, 1709, 1843, 1847, 1884
SspMI	CTAG	5 cut(s)	680, 1005, 1253, 1830, 1900
StyD4I	CCNGG	2 cut(s)	266, 733
StyI	CCWWGG	2 cut(s)	756, 874
TaaI	ACNGT	2 cut(s)	1601, 1637
TaiI	ACGT	4 cut(s)	190, 327, 573, 1776
TaqI	TCGA	8 cut(s)	204, 344, 371, 499, 591, 868, 987, 1535
TaqII	GACCGA	1 cut(s)	1038
TasI	AATT	8 cut(s)	63, 383, 427, 631, 887, 1142, 1496, 1791
TatI	WGTACW	2 cut(s)	465, 614
TauI	GCSGC	3 cut(s)	366, 777, 1886
TfiI	GAWTC	4 cut(s)	836, 984, 1075, 1537
Tru1I	TTAA	9 cut(s)	297, 426, 522, 600, 857, 1274, 1454, 1521, 1725
Tru9I	TTAA	9 cut(s)	297, 426, 522, 600, 857, 1274, 1454, 1521, 1725
TscAI	CASTG	3 cut(s)	49, 889, 1668
TseFI	GTSAC	2 cut(s)	46, 1601
TseI	GCWGC	7 cut(s)	565, 893, 971, 974, 995, 1088, 1525
Tsp45I	GTSAC	2 cut(s)	46, 1601
TspDTI	ATGAA	7 cut(s)	222, 638, 728, 1227, 1322, 1394, 1567
TspGWI	ACGGA	1 cut(s)	889
TspRI	CASTG	3 cut(s)	49, 889, 1668
VneI	GTGCAC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	1 cut(s)	1829
XceI	RCATGY	5 cut(s)	163, 202, 950, 1111, 1520
XmiI	GTMKAC	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	1837
XspI	CTAG	5 cut(s)	680, 1005, 1253, 1830, 1900
ZraI	GACGTC	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	616
Zsp2I	ATGCAT	2 cut(s)	747, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.