Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016074

Physical Location & Seq

Genomic Coordinates Forward (+)

56236452 .. 56238578

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20817

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGCTCGGCACCTCACTGCGCCCCGATGACCATATATACCCCAGTGTCACCAAGTCCTGCGCAATTCTGAACCGCCCTGATGTTGGGCAGTCTATACATTGCCTTGCAGTCAAGACCGGGTATCATGTTGATGTGTTTGTGGCAAGTTCTGTTGTTGACATGTATGCGAAATGTGGGCAGATAAGACATGCCCGCAACATGTTCGATGAAATGCCTCACAAGAATGTGGTTTCTTGGAGTGGGATGATTTACGGGTACACTCAGGCCGGGGAGGCGGAGGAGGCTTTGGTGCTTTTTAAACAAGCATTGCTTGAGGGTTTGGACGTCAATGATTTTACATTTTCGAGTGTTGTAAGGGTTTGTGGCAGTTCGACGCTTCTTGAATTGGGGAGGCAAATACATGGCTTGTGCTTCAAGACCAGTTTTGATTCGTCGAGTTTTGTTGGTAGTTCTTTGGTGTCATTGTACTCTAAGTGTGGAGTGATTGAAGGAGCTTATCGAGTTTTTGGTGAGATACCTGTTAAAAATCTTGGGATGTGGAATGCAATGCTGATAGCCTGTGCGCAGCATGTGCACACGAATAAGACCTTCGACCTGTTTATACAGATGGAAAGTACTGGGATGAAGCCGAATTTTATTACATTTTTGTGTGTGCTCTATGCTTGTAGTCATGCTGGGCTAGTTGAAAAGGGGCACCATTACTTTCGGCTCATGAAAGAGTATGGGATTGAGCCAGGGGAAATGCATTATGCTTCCTTGGTGGACTTGCTTGGCCGCGCTGGAAAGTTGCAGGATGCAGTCAAAATAATAGAGGGGATGCCTTTTGAACCCACAGAATCTGTATGGGGAGCCTTGTTAACAGGTTGTCGACTCCATGGAGACACTGAATTGGCAGCTTCCGTGGCTGACAAAATCTTTGAGTTGGGTTCTGTAAGCTCTGGGATGCATGTGCTCGTATCTAATGCTTATGCTGCTGCTGGGAGATTCGAGGAAGCAGCAAAAGCTAGGAAGATGCTAAGAGACCGAGGGGTGAAAAAGGAGACAGGTTTGAGTTGGGTTGAGGAAGGAAACAAGATTCACACATTCGCTGCTGGGGACAGGACTCACATGAGGACTAAAGAGATTTATCAGAAGTTGGAAGAATTAGGGGAGGAAATGGAGAGGGCTGGTTATGTTGCAGACACAAGTTTTGTGCTTAGAGAAGTAAATAATGAAGAGAAAAACCAGACGATTAGGTATCATAGTGAAAGACTAGCTGTGGCATTTGGCCTTTTAACCATTCCTACAGATAGGCCAATCAGGATTATGAAGAACTTGCGTATTTGTGGTGATTGTCATACTGCTATCAAGTTTATGTCCAAGTGTTCAGGAAGGGTTATCATTGTTAGGGATAACAATAGGTTTCATAGGTTTGAGGATGGAAAATGCACTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

482

Amino Acids

53.75

Weight (kDa)

6.83

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 121	2e-06	PPR repeat family
PPR_long	PF17177	87 - 264	4.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	178 - 223	6e-06	PPR repeat family
PPR_long	PF17177	182 - 265	8.1e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	292 - 354	8.4e-12	E motif
Eplus_motif	PF20430	359 - 386	1e-06	E+ motif
DYW_deaminase	PF14432	390 - 482	2.2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52630
fragaria_vesca	FvH4_5g33500 FvH4_5g33500 FvH4_5g33620
malus_domestica	MD12G1068000.v1.1 MD14G1068100.v1.1
prunus_persica	Prupe.7G066200_v2.0.a1
pyrus_communis	pycom12g06000
rosa_chinensis	RchiOBHm_Chr7g0232261
rosa_laevigata	RLG00000001359
rosa_multiflora	Rmu_sc0004136.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228480
rosa_samantha	Rh7AG426400 Rh7BG400100
rosa_wichuraiana	Rw7G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	327
Acc16I	TGCGCA	2 cut(s)	61, 564
AccB1I	GGYRCC	2 cut(s)	8, 693
AccI	GTMKAC	1 cut(s)	868
AccII	CGCG	1 cut(s)	777
AciI	CCGC	4 cut(s)	73, 193, 275, 775
AcoI	YGGCCR	1 cut(s)	772
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	3 cut(s)	257, 467, 616
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	2 cut(s)	159, 198
AgsI	TTSAA	5 cut(s)	383, 415, 488, 686, 827
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	5 cut(s)	494, 896, 936, 1004, 1256
AluI	AGCT	5 cut(s)	494, 896, 936, 1004, 1256
Alw21I	GWGCWC	3 cut(s)	576, 657, 954
Alw26I	GTCTC	3 cut(s)	873, 1014, 1034
Alw44I	GTGCAC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	4 cut(s)	264, 772, 1267, 1292
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	6 cut(s)	565, 893, 971, 974, 995, 1088
ApoI	RAATTY	1 cut(s)	631
ArsI	GACNNNNNNTTYG	4 cut(s)	899, 931, 1172, 1204
AspLEI	GCGC	4 cut(s)	21, 62, 565, 779
AsuC2I	CCSGG	2 cut(s)	118, 268
AsuHPI	GGTGA	4 cut(s)	40, 521, 1042, 1340
BaeGI	GKGCMC	2 cut(s)	576, 696
BanI	GGYRCC	2 cut(s)	8, 693
Bbv12I	GWGCWC	3 cut(s)	576, 657, 954
BbvI	GCAGC	6 cut(s)	577, 905, 958, 961, 1007, 1075
BccI	CCATC	2 cut(s)	601, 1412
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	735
BcnI	CCSGG	2 cut(s)	118, 268
BcoDI	GTCTC	3 cut(s)	873, 1014, 1034
BfaI	CTAG	3 cut(s)	680, 1005, 1253
BfmI	CTRYAG	1 cut(s)	1284
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	7 cut(s)	566, 775, 894, 972, 975, 996, 1089
BlsI	GCNGC	7 cut(s)	567, 776, 895, 973, 976, 997, 1090
BmcAI	AGTACT	1 cut(s)	616
Bme1390I	CCNGG	3 cut(s)	118, 268, 735
BmiI	GGNNCC	3 cut(s)	10, 695, 850
BmrFI	CCNGG	3 cut(s)	118, 268, 735
BmrI	ACTGGG	2 cut(s)	36, 627
BmsI	GCATC	4 cut(s)	784, 807, 933, 1002
BmuI	ACTGGG	2 cut(s)	36, 627
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	118, 268
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	1014
BsaJI	CCNNGG	6 cut(s)	267, 734, 756, 874, 900, 1024
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	42, 420, 622
Bse3DI	GCAATG	3 cut(s)	97, 305, 552
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	6 cut(s)	267, 734, 756, 874, 900, 1024
BseGI	GGATG	7 cut(s)	249, 540, 627, 799, 822, 948, 1423
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	3 cut(s)	97, 305, 552
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	3 cut(s)	42, 420, 622
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	2 cut(s)	576, 696
BseXI	GCAGC	6 cut(s)	577, 905, 958, 961, 1007, 1075
BseYI	CCCAGC	3 cut(s)	674, 977, 1091
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	4 cut(s)	266, 774, 1269, 1294
BshNI	GGYRCC	2 cut(s)	8, 693
BsiHKAI	GWGCWC	3 cut(s)	576, 657, 954
BsiSI	CCGG	2 cut(s)	117, 267
BslFI	GGGAC	1 cut(s)	1109
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	3 cut(s)	873, 1014, 1034
BsmFI	GGGAC	1 cut(s)	1109
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	4 cut(s)	266, 774, 1269, 1294
Bso31I	GGTCTC	1 cut(s)	1014
Bsp1286I	GDGCHC	4 cut(s)	576, 657, 696, 954
Bsp19I	CCATGG	1 cut(s)	874
BspACI	CCGC	4 cut(s)	73, 193, 275, 775
BspANI	GGCC	4 cut(s)	266, 774, 1269, 1294
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	777
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	10, 695, 850
BspT107I	GGYRCC	2 cut(s)	8, 693
BspTNI	GGTCTC	1 cut(s)	1014
BsrDI	GCAATG	3 cut(s)	97, 305, 552
BsrI	ACTGG	3 cut(s)	42, 420, 622
BssECI	CCNNGG	6 cut(s)	267, 734, 756, 874, 900, 1024
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	756, 874
Bst2UI	CCWGG	1 cut(s)	735
Bst6I	CTCTTC	1 cut(s)	1209
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	4 cut(s)	261, 471, 1016, 1196
BstDSI	CCRYGG	2 cut(s)	874, 900
BstF5I	GGATG	7 cut(s)	249, 540, 627, 799, 822, 948, 1423
BstFNI	CGCG	1 cut(s)	777
BstHHI	GCGC	4 cut(s)	21, 62, 565, 779
BstMAI	GTCTC	3 cut(s)	873, 1014, 1034
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 281, 571, 902, 971, 1001
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	5 cut(s)	163, 191, 202, 572, 950
BstSCI	CCNGG	3 cut(s)	116, 266, 733
BstSFI	CTRYAG	1 cut(s)	1284
BstSLI	GKGCMC	2 cut(s)	576, 696
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	6 cut(s)	577, 905, 958, 961, 1007, 1075
BsuRI	GGCC	4 cut(s)	266, 774, 1269, 1294
BtgI	CCRYGG	2 cut(s)	874, 900
BtsCI	GGATG	7 cut(s)	249, 540, 627, 799, 822, 948, 1423
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	3 cut(s)	14, 49, 882
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	1 cut(s)	711
CfoI	GCGC	4 cut(s)	21, 62, 565, 779
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	256, 466, 615
CviQI	GTAC	3 cut(s)	256, 466, 615
DdeI	CTNAG	4 cut(s)	261, 471, 1016, 1196
DraI	TTTAAA	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	1209
EarI	CTCTTC	1 cut(s)	1209
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	756, 874
Eco31I	GGTCTC	1 cut(s)	1014
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	756, 874
EcoT22I	ATGCAT	2 cut(s)	747, 948
ErhI	CCWWGG	2 cut(s)	756, 874
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	1 cut(s)	1109
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	7 cut(s)	566, 775, 894, 972, 975, 996, 1089
FokI	GGATG	7 cut(s)	256, 547, 634, 806, 829, 955, 1430
Fsp4HI	GCNGC	7 cut(s)	566, 775, 894, 972, 975, 996, 1089
FspBI	CTAG	3 cut(s)	680, 1005, 1253
FspI	TGCGCA	2 cut(s)	61, 564
GlaI	GCGC	4 cut(s)	20, 61, 564, 778
GluI	GCNGC	7 cut(s)	566, 775, 894, 972, 975, 996, 1089
GsaI	CCCAGC	3 cut(s)	678, 981, 1095
HaeIII	GGCC	4 cut(s)	266, 774, 1269, 1294
HapII	CCGG	2 cut(s)	117, 267
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	4 cut(s)	21, 62, 565, 779
Hin1I	GRCGYC	1 cut(s)	324
Hin6I	GCGC	4 cut(s)	19, 60, 563, 777
HinP1I	GCGC	4 cut(s)	19, 60, 563, 777
HincII	GTYRAC	3 cut(s)	157, 858, 869
HindII	GTYRAC	3 cut(s)	157, 858, 869
HinfI	GANTC	6 cut(s)	428, 836, 870, 984, 1075, 1102
HpaI	GTTAAC	1 cut(s)	858
HpaII	CCGG	2 cut(s)	117, 267
HphI	GGTGA	4 cut(s)	40, 521, 1042, 1340
Hpy166II	GTNNAC	6 cut(s)	157, 258, 574, 763, 858, 869
Hpy188I	TCNGA	2 cut(s)	69, 1131
Hpy188III	TCNNGA	6 cut(s)	112, 380, 415, 712, 1300, 1368
Hpy8I	GTNNAC	6 cut(s)	157, 258, 574, 763, 858, 869
Hpy99I	CGWCG	2 cut(s)	376, 436
HpyAV	CCTTC	4 cut(s)	482, 598, 1058, 1365
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	9 cut(s)	107, 545, 574, 745, 790, 797, 946, 1178, 1428
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 281, 571, 902, 971, 1001
HpyF3I	CTNAG	4 cut(s)	261, 471, 1016, 1196
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	324
HspAI	GCGC	4 cut(s)	19, 60, 563, 777
KspAI	GTTAAC	1 cut(s)	858
LmnI	GCTCC	2 cut(s)	491, 848
Lsp1109I	GCAGC	6 cut(s)	577, 905, 958, 961, 1007, 1075
LweI	GCATC	4 cut(s)	784, 807, 933, 1002
MaeI	CTAG	3 cut(s)	680, 1005, 1253
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	46
MboII	GAAGA	4 cut(s)	1021, 1151, 1226, 1321
MhlI	GDGCHC	4 cut(s)	576, 657, 696, 954
MluCI	AATT	5 cut(s)	63, 383, 631, 887, 1142
MlyI	GAGTC	2 cut(s)	864, 1096
MmeI	TCCRAC	1 cut(s)	1116
Mph1103I	ATGCAT	2 cut(s)	747, 948
MseI	TTAA	4 cut(s)	297, 522, 857, 1274
MslI	CAYNNNNRTG	3 cut(s)	129, 222, 646
MspI	CCGG	2 cut(s)	117, 267
MspR9I	CCNGG	3 cut(s)	118, 268, 735
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	6 cut(s)	272, 281, 571, 902, 971, 1001
NciI	CCSGG	2 cut(s)	118, 268
NcoI	CCATGG	1 cut(s)	874
NlaIV	GGNNCC	3 cut(s)	10, 695, 850
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	2 cut(s)	61, 564
NsiI	ATGCAT	2 cut(s)	747, 948
NspI	RCATGY	5 cut(s)	163, 191, 202, 572, 950
PagI	TCATGA	1 cut(s)	711
PciI	ACATGT	2 cut(s)	159, 198
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	4 cut(s)	428, 836, 984, 1075
PkrI	GCNGC	7 cut(s)	567, 776, 895, 973, 976, 997, 1090
PleI	GAGTC	2 cut(s)	864, 1096
PpsI	GAGTC	2 cut(s)	864, 1096
PscI	ACATGT	2 cut(s)	159, 198
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	3 cut(s)	674, 977, 1091
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	3 cut(s)	10, 695, 850
PstNI	CAGNNNCTG	1 cut(s)	839
RsaI	GTAC	3 cut(s)	257, 467, 616
RsaNI	GTAC	3 cut(s)	256, 466, 615
RseI	CAYNNNNRTG	3 cut(s)	129, 222, 646
SalI	GTCGAC	1 cut(s)	867
SaqAI	TTAA	4 cut(s)	297, 522, 857, 1274
SatI	GCNGC	7 cut(s)	566, 775, 894, 972, 975, 996, 1089
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	2 cut(s)	864, 1096
ScrFI	CCNGG	3 cut(s)	118, 268, 735
SduI	GDGCHC	4 cut(s)	576, 657, 696, 954
SfaNI	GCATC	4 cut(s)	784, 807, 933, 1002
SfcI	CTRYAG	1 cut(s)	1284
SmiMI	CAYNNNNRTG	3 cut(s)	129, 222, 646
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	63, 383, 631, 887, 1142
SsiI	CCGC	4 cut(s)	73, 193, 275, 775
SspMI	CTAG	3 cut(s)	680, 1005, 1253
StyD4I	CCNGG	3 cut(s)	116, 266, 733
StyI	CCWWGG	2 cut(s)	756, 874
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	8 cut(s)	204, 344, 371, 434, 499, 591, 868, 987
TaqII	GACCGA	1 cut(s)	1038
TasI	AATT	5 cut(s)	63, 383, 631, 887, 1142
TatI	WGTACW	2 cut(s)	465, 614
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	4 cut(s)	428, 836, 984, 1075
Tru1I	TTAA	4 cut(s)	297, 522, 857, 1274
Tru9I	TTAA	4 cut(s)	297, 522, 857, 1274
TscAI	CASTG	3 cut(s)	21, 49, 889
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	6 cut(s)	565, 893, 971, 974, 995, 1088
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	6 cut(s)	222, 638, 728, 1227, 1322, 1394
TspGWI	ACGGA	1 cut(s)	889
TspRI	CASTG	3 cut(s)	21, 49, 889
VneI	GTGCAC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	5 cut(s)	163, 191, 202, 572, 950
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	3 cut(s)	680, 1005, 1253
ZraI	GACGTC	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	616
Zsp2I	ATGCAT	2 cut(s)	747, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.