Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0016074

Physical Location & Seq

Genomic Coordinates Forward (+)

7385391 .. 7386782

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1068100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCTTGGCGCGCAACTGCTCCCCGATGACCATATATACCCGAGCGCCCCCAAGTCCTGCACGATTTTGAATCGGGTTGACGTTGGGAAGTCTGTGCATTGCCTTGCGGTGAAGACTGGGTACGAGTTTGATGTGTTTGTGGGGAGTTCTGTGGTCGATATGTATGCAAAATGCAGAGAGATAAAGGATGCTCGGAAGGTGTTTCATGAAATTCCTAAGAAGAATGTGGTTTCTTGGAGTGGGATGATTTATGGGTATACTCAATTGGGTCAGGATAAGGAGGCTCTGAGACTATTTAACAGGCCATGGTTGAAAATTTGGATGTCAATGACTTTACATTTTCAGAGTGTTATACGGGTTTGTGGCAGTTCGACGCTTCTTGAATTGGGGAGGCAAATATATGGCTTGTGCTTCAAAACGAACTTCGATTTGTCGAGTTTTGTTGGAGCTTATCGTGGTTTTGATGAGATACCCGTTAAGAATCTTGGAATGTGGAATGCAATGTTGGTCGTATGTGCCCAGCATGTGCACACGAATAAGGCTCTTGATTTGTTTAAACAGATGGAAAGTGCAGGGATGAAGCCGAATTTCATTACGTTTTTGTGTGTGCTTTATCCTTGTAGCCATGCTGGGTTAGTTGAAAGGGTGCATTATTACTTTAGGCTCATGAAAGAGTATGGGATTGAGCCAGGCGAGCAGCATTACGCTACCCTGGTGGACTTGCTTAGCCGTGCTGGAAAATTGCAGGAAGCAGGAGCTTTATTAACATGTTGTCAAATCCACGATGACACTGAATTGGCAGCCTCTGTGGCTGACAGAGTCTTTGAGTTGGGTCCTGTGAGCTCTGGCCTGCATGTACTTTTGTCTAATGCTTATGCTGCTGCTGGAAAATTTGAGGAAGCAGCAAAAGTCATGAAGATGCTAAGAGACCGTGGAGTGAAAAAGGAAACGGGTTTGAGCTGGGTTGATGAGGGAAACAAAATTCACACATTTGCGGCTGGGGACAGGACTCAAATGAGAACTAAAGAGATATATGAGAAGTTGGATGAGTTAGGGGAGGAAATGGAGAAAGCTGGTTATGTTGCAGACACAAGTTTCATGCTAAGAGAAGTAAATCGCGAAGAGAAAGATCACAGTGAAAGGCTAGCCATAGCATTTGGTCTTATTACCTTTCCGCCCGATAGACCCATTAAGATTATGAAGAACTTGCATATTCGTGGCGATTGTAATACTGCAATCAAGTTTATGTCCAAGTGCTCAGGAAGGGTTATCATAGTGAGGGAACAACAGGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

433

Amino Acids

48.72

Weight (kDa)

8.16

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	163 - 204	8.4e-07	PPR repeat family
PPR_long	PF17177	168 - 256	4.4e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	261 - 323	1.1e-10	E motif
DYW_deaminase	PF14432	359 - 429	5.1e-17	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52630
fragaria_vesca	FvH4_5g33500 FvH4_5g33500 FvH4_5g33620
malus_domestica	MD12G1068000.v1.1 MD14G1068100.v1.1
prunus_persica	Prupe.7G066200_v2.0.a1
pyrus_communis	pycom12g06000
rosa_chinensis	RchiOBHm_Chr7g0232261
rosa_laevigata	RLG00000001359
rosa_multiflora	Rmu_sc0004136.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228480
rosa_samantha	Rh7AG426400 Rh7BG400100
rosa_wichuraiana	Rw7G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	2 cut(s)	11, 1119
AciI	CCGC	3 cut(s)	107, 995, 1175
AcsI	RAATTY	5 cut(s)	210, 315, 586, 890, 981
AfaI	GTAC	2 cut(s)	122, 858
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	5 cut(s)	70, 313, 383, 415, 641
AjnI	CCWGG	2 cut(s)	688, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	5 cut(s)	449, 758, 843, 960, 1073
AluI	AGCT	5 cut(s)	449, 758, 843, 960, 1073
Alw21I	GWGCWC	3 cut(s)	531, 845, 1259
Alw26I	GTCTC	2 cut(s)	283, 921
Alw44I	GTGCAC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	302, 847
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	5 cut(s)	697, 800, 878, 881, 902
ApoI	RAATTY	5 cut(s)	210, 315, 586, 890, 981
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AspLEI	GCGC	3 cut(s)	11, 13, 47
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	1144
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	2 cut(s)	520, 531
BanII	GRGCYC	1 cut(s)	845
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	3 cut(s)	531, 845, 1259
BbvI	GCAGC	5 cut(s)	709, 812, 865, 868, 914
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	2 cut(s)	690, 713
BcoDI	GTCTC	2 cut(s)	283, 921
BfaI	CTAG	1 cut(s)	1145
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	809
BisI	GCNGC	6 cut(s)	698, 801, 879, 882, 903, 996
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	6 cut(s)	699, 802, 880, 883, 904, 997
Bme1390I	CCNGG	2 cut(s)	690, 713
Bme18I	GGWCC	1 cut(s)	833
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	834
BmrFI	CCNGG	2 cut(s)	690, 713
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	178, 909
BmtI	GCTAGC	1 cut(s)	1148
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	1258
Bpu1102I	GCTNAGC	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	3 cut(s)	305, 711, 931
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	2 cut(s)	97, 507
BseBI	CCWGG	2 cut(s)	690, 713
BseDI	CCNNGG	3 cut(s)	305, 711, 931
BseGI	GGATG	5 cut(s)	193, 249, 327, 582, 1051
BseMI	GCAATG	2 cut(s)	97, 507
BseMII	CTCAG	2 cut(s)	278, 1272
BseNI	ACTGG	1 cut(s)	121
BsePI	GCGCGC	1 cut(s)	9
BseSI	GKGCMC	2 cut(s)	520, 531
BseXI	GCAGC	5 cut(s)	709, 812, 865, 868, 914
BseYI	CCCAGC	4 cut(s)	519, 629, 960, 998
BsgI	GTGCAG	2 cut(s)	43, 591
Bsh1236I	CGCG	2 cut(s)	11, 1119
BshFI	GGCC	2 cut(s)	304, 849
BsiHKAI	GWGCWC	3 cut(s)	531, 845, 1259
BsiHKCI	CYCGRG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	1016
BsmAI	GTCTC	2 cut(s)	283, 921
BsmFI	GGGAC	1 cut(s)	1016
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	304, 849
Bso31I	GGTCTC	1 cut(s)	921
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	4 cut(s)	520, 531, 845, 1259
Bsp143I	GATC	1 cut(s)	1129
Bsp1720I	GCTNAGC	1 cut(s)	725
Bsp19I	CCATGG	1 cut(s)	305
Bsp68I	TCGCGA	1 cut(s)	1119
BspACI	CCGC	3 cut(s)	107, 995, 1175
BspANI	GGCC	2 cut(s)	304, 849
BspCNI	CTCAG	2 cut(s)	279, 1271
BspFNI	CGCG	2 cut(s)	11, 1119
BspHI	TCATGA	3 cut(s)	205, 666, 912
BspLI	GGNNCC	1 cut(s)	834
BspOI	GCTAGC	1 cut(s)	1148
BspTNI	GGTCTC	1 cut(s)	921
BsrDI	GCAATG	2 cut(s)	97, 507
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	305, 711, 931
BssHII	GCGCGC	1 cut(s)	9
BssMI	GATC	1 cut(s)	1129
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	690, 713
Bst4CI	ACNGT	2 cut(s)	932, 1136
Bst6I	CTCTTC	1 cut(s)	1116
BstC8I	GCNNGC	4 cut(s)	11, 695, 851, 1146
BstDEI	CTNAG	6 cut(s)	216, 287, 725, 923, 1103, 1258
BstDSI	CCRYGG	2 cut(s)	305, 931
BstF5I	GGATG	5 cut(s)	193, 249, 327, 582, 1051
BstFNI	CGCG	2 cut(s)	11, 1119
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	11, 13, 47
BstKTI	GATC	1 cut(s)	1132
BstMAI	GTCTC	2 cut(s)	283, 921
BstMBI	GATC	1 cut(s)	1129
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 694, 809, 878
BstNI	CCWGG	2 cut(s)	690, 713
BstNSI	RCATGY	3 cut(s)	527, 771, 857
BstSCI	CCNGG	2 cut(s)	688, 711
BstSLI	GKGCMC	2 cut(s)	520, 531
BstUI	CGCG	2 cut(s)	11, 1119
BstV1I	GCAGC	5 cut(s)	709, 812, 865, 868, 914
BstV2I	GAAGAC	1 cut(s)	119
BstZ17I	GTATAC	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	304, 849
BtgI	CCRYGG	2 cut(s)	305, 931
BtsCI	GGATG	5 cut(s)	193, 249, 327, 582, 1051
BtsIMutI	CAGTG	2 cut(s)	789, 1141
BtuMI	TCGCGA	1 cut(s)	1119
Cac8I	GCNNGC	4 cut(s)	11, 695, 851, 1146
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	3 cut(s)	205, 666, 912
CfoI	GCGC	3 cut(s)	11, 13, 47
Cfr13I	GGNCC	1 cut(s)	833
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	121, 857
CviAII	CATG	9 cut(s)	206, 306, 524, 626, 667, 768, 854, 913, 1099
CviQI	GTAC	2 cut(s)	121, 857
DdeI	CTNAG	6 cut(s)	216, 287, 725, 923, 1103, 1258
DpnI	GATC	1 cut(s)	1131
DpnII	GATC	1 cut(s)	1129
DraI	TTTAAA	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
EciI	GGCGGA	1 cut(s)	1164
Ecl136II	GAGCTC	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	845
Eco31I	GGTCTC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	843
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	688, 711
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	9 cut(s)	209, 309, 527, 629, 670, 771, 857, 916, 1102
FaqI	GGGAC	1 cut(s)	1016
FatI	CATG	9 cut(s)	205, 305, 523, 625, 666, 767, 853, 912, 1098
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	6 cut(s)	698, 801, 879, 882, 903, 996
FokI	GGATG	5 cut(s)	200, 256, 334, 589, 1058
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	6 cut(s)	698, 801, 879, 882, 903, 996
FspBI	CTAG	1 cut(s)	1145
GlaI	GCGC	3 cut(s)	10, 12, 46
GluI	GCNGC	6 cut(s)	698, 801, 879, 882, 903, 996
GsaI	CCCAGC	4 cut(s)	523, 633, 964, 1002
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	304, 849
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	3 cut(s)	11, 13, 47
Hin1II	CATG	9 cut(s)	209, 309, 527, 629, 670, 771, 857, 916, 1102
Hin6I	GCGC	3 cut(s)	9, 11, 45
HinP1I	GCGC	3 cut(s)	9, 11, 45
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	4 cut(s)	70, 481, 819, 1009
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	4 cut(s)	79, 258, 529, 718
Hpy188I	TCNGA	3 cut(s)	195, 288, 345
Hpy188III	TCNNGA	8 cut(s)	206, 272, 380, 545, 667, 913, 1118, 1260
Hpy8I	GTNNAC	4 cut(s)	79, 258, 529, 718
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	190, 1257
HpyCH4III	ACNGT	2 cut(s)	932, 1136
HpyCH4IV	ACGT	2 cut(s)	81, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 694, 809, 878
HpyF3I	CTNAG	6 cut(s)	216, 287, 725, 923, 1103, 1258
HpySE526I	ACGT	2 cut(s)	81, 596
Hsp92II	CATG	9 cut(s)	209, 309, 527, 629, 670, 771, 857, 916, 1102
HspAI	GCGC	3 cut(s)	9, 11, 45
Kzo9I	GATC	1 cut(s)	1129
LmnI	GCTCC	3 cut(s)	24, 446, 755
Lsp1109I	GCAGC	5 cut(s)	709, 812, 865, 868, 914
LweI	GCATC	2 cut(s)	178, 909
MaeI	CTAG	1 cut(s)	1145
MaeII	ACGT	2 cut(s)	81, 596
MalI	GATC	1 cut(s)	1131
MboI	GATC	1 cut(s)	1129
MboII	GAAGA	5 cut(s)	124, 232, 928, 1133, 1213
MfeI	CAATTG	1 cut(s)	263
MhlI	GDGCHC	4 cut(s)	520, 531, 845, 1259
MluCI	AATT	9 cut(s)	210, 263, 315, 383, 586, 740, 794, 890, 981
MlyI	GAGTC	2 cut(s)	828, 1003
MmeI	TCCRAC	2 cut(s)	424, 1023
MnlI	CCTC	7 cut(s)	274, 384, 814, 889, 964, 1051, 1272
MseI	TTAA	5 cut(s)	297, 477, 555, 764, 1191
MslI	CAYNNNNRTG	2 cut(s)	917, 1215
MspR9I	CCNGG	2 cut(s)	690, 713
MssI	GTTTAAAC	1 cut(s)	556
MunI	CAATTG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	2 cut(s)	690, 713
MvnI	CGCG	2 cut(s)	11, 1119
MwoI	GCNNNNNNNGC	4 cut(s)	10, 694, 809, 878
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	1129
NheI	GCTAGC	1 cut(s)	1144
NlaIII	CATG	9 cut(s)	209, 309, 527, 629, 670, 771, 857, 916, 1102
NlaIV	GGNNCC	1 cut(s)	834
NruI	TCGCGA	1 cut(s)	1119
NspI	RCATGY	3 cut(s)	527, 771, 857
PagI	TCATGA	3 cut(s)	205, 666, 912
PauI	GCGCGC	1 cut(s)	9
PciI	ACATGT	1 cut(s)	767
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	70, 481
PflFI	GACNNNGTC	1 cut(s)	818
PkrI	GCNGC	6 cut(s)	699, 802, 880, 883, 904, 997
PleI	GAGTC	2 cut(s)	827, 1003
PmeI	GTTTAAAC	1 cut(s)	556
PpsI	GAGTC	2 cut(s)	827, 1003
PpuMI	RGGWCCY	1 cut(s)	833
PscI	ACATGT	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	833
Psp6I	CCWGG	2 cut(s)	688, 711
PspFI	CCCAGC	4 cut(s)	519, 629, 960, 998
PspGI	CCWGG	2 cut(s)	688, 711
PspN4I	GGNNCC	1 cut(s)	834
PspPI	GGNCC	1 cut(s)	833
PspPPI	RGGWCCY	1 cut(s)	833
PstNI	CAGNNNCTG	1 cut(s)	806
PsyI	GACNNNGTC	1 cut(s)	818
PteI	GCGCGC	1 cut(s)	9
RruI	TCGCGA	1 cut(s)	1119
RsaI	GTAC	2 cut(s)	122, 858
RsaNI	GTAC	2 cut(s)	121, 857
RseI	CAYNNNNRTG	2 cut(s)	917, 1215
SacI	GAGCTC	1 cut(s)	845
SaqAI	TTAA	5 cut(s)	297, 477, 555, 764, 1191
SatI	GCNGC	6 cut(s)	698, 801, 879, 882, 903, 996
Sau3AI	GATC	1 cut(s)	1129
Sau96I	GGNCC	1 cut(s)	833
SchI	GAGTC	2 cut(s)	828, 1003
ScrFI	CCNGG	2 cut(s)	690, 713
SduI	GDGCHC	4 cut(s)	520, 531, 845, 1259
SfaNI	GCATC	2 cut(s)	178, 909
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1215
Sse9I	AATT	9 cut(s)	210, 263, 315, 383, 586, 740, 794, 890, 981
SsiI	CCGC	3 cut(s)	107, 995, 1175
SspMI	CTAG	1 cut(s)	1145
SstI	GAGCTC	1 cut(s)	845
StyD4I	CCNGG	2 cut(s)	688, 711
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	932, 1136
TaiI	ACGT	2 cut(s)	84, 599
TaqI	TCGA	4 cut(s)	156, 371, 426, 434
TasI	AATT	9 cut(s)	210, 263, 315, 383, 586, 740, 794, 890, 981
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	1 cut(s)	998
TfiI	GAWTC	2 cut(s)	70, 481
Tru1I	TTAA	5 cut(s)	297, 477, 555, 764, 1191
Tru9I	TTAA	5 cut(s)	297, 477, 555, 764, 1191
TscAI	CASTG	2 cut(s)	796, 1141
TseI	GCWGC	5 cut(s)	697, 800, 878, 881, 902
TspDTI	ATGAA	9 cut(s)	194, 222, 580, 593, 683, 929, 1087, 1214, 1284
TspRI	CASTG	2 cut(s)	796, 1141
Tth111I	GACNNNGTC	1 cut(s)	818
VneI	GTGCAC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	833
XapI	RAATTY	5 cut(s)	210, 315, 586, 890, 981
XceI	RCATGY	3 cut(s)	527, 771, 857
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	1 cut(s)	1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.