AT5G53000

TAP42-like family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21485317 .. 21488042
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53000.1

Sequence Viewer

Length: 1218 bp
ATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTAGGAAAATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTGCGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATGCTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGGAGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAGATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCTCTCCTCAATTAACTTGGCTATTTGTAAGGCTATTGATCTGTTGGAAATGCTAAAGAGAGAAGAGGAAATGCTCTCTGCAATAAAGGAAAGACAGTTGAAGGATGGAGAGGGTGGATTTTCTCGGGATGCTCTTGATGATCGTACAAAGAAAGCTGAAACCTGGCACAGAGACGCTGCTGCAAGGATACAGTACTCTAAACCGGCACAACCAATCACTTGTGCCACATTTGCACAAGATGTGTTAGAAGGAAGAGCTTCGGTATCACAAGGTCACGAACACAAGAACCAACCTCTTATATTCGGTCCAGCAAGCATCGTGGGTGGACCGCTCTCTACCGAGAGAGAAAGAATGATAGCTCAGGTCTTCCAACCAAGTCACAGGATGCCAACAATGTGCATAGAGGATGCTGGGTTAACAGAGATGAACATAATGAATGATTGGCAAGAGCAGACGAAAAAAGCCATTGAAGAAGCAACCACCTCATGGTACAATGATAAACCTCTAAGAAGAAAAGAAGAAGACGAGGAAGATGATGATGAAGACGAAGAAGCTGTGATGAAAGCTAGAGCTTTCGATGATTGGAAGGATGATAATCCTCGCGGTGCAGGTAACAAGAAACTCACACCTTGTGGCTGA

Protein Analysis

405

Amino Acids

45.66

Weight (kDa)

4.92

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAP42 PF04177 11 - 393 3.4e-87 TAP42-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 2 cut(s) 397, 1178
AccB1I GGYRCC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 1065
AccBSI CCGCTC 1 cut(s) 910
AccI GTMKAC 1 cut(s) 512
AccII CGCG 1 cut(s) 1182
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 3 cut(s) 236, 908, 1182
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 1211
AfaI GTAC 3 cut(s) 724, 773, 1070
AfiI CCNNNNNNNGG 1 cut(s) 1065
AgsI TTSAA 6 cut(s) 304, 424, 458, 524, 679, 1049
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 2 cut(s) 575, 740
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 2 cut(s) 170, 744
Alw44I GTGCAC 1 cut(s) 384
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 702
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 1 cut(s) 573
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 4 cut(s) 71, 437, 755, 758
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 2 cut(s) 308, 835
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 265, 884, 905
AvaI CYCGRG 1 cut(s) 702
AvaII GGWCC 3 cut(s) 265, 884, 905
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 406
BauI CACGAG 1 cut(s) 369
BbsI GAAGAC 3 cut(s) 937, 1107, 1128
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 4 cut(s) 58, 424, 742, 745
BccI CCATC 1 cut(s) 677
BciT130I CCWGG 2 cut(s) 577, 742
BciVI GTATCC 1 cut(s) 759
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 170, 744
BfaI CTAG 2 cut(s) 54, 1146
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 2 cut(s) 397, 1178
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 4 cut(s) 72, 438, 756, 759
BlsI GCNGC 4 cut(s) 73, 439, 757, 760
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 2 cut(s) 577, 742
Bme18I GGWCC 3 cut(s) 265, 884, 905
BmeT110I CYCGRG 1 cut(s) 702
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 3 cut(s) 265, 884, 905
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 577, 742
BmsI GCATC 5 cut(s) 509, 697, 903, 954, 976
BpiI GAAGAC 3 cut(s) 937, 1107, 1128
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 1173
BsaWI WCCGGW 3 cut(s) 267, 343, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 1065
Bse118I RCCGGY 1 cut(s) 781
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 1173
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 2 cut(s) 577, 742
BseGI GGATG 8 cut(s) 103, 119, 352, 688, 712, 969, 991, 1174
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 1 cut(s) 1065
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 953
BseRI GAGGAG 3 cut(s) 365, 387, 574
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 4 cut(s) 58, 424, 742, 745
BseYI CCCAGC 1 cut(s) 989
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 1182
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 702
BsiSI CCGG 4 cut(s) 268, 344, 518, 782
BslI CCNNNNNNNGG 1 cut(s) 1065
BsmAI GTCTC 2 cut(s) 170, 744
BsmBI CGTCTC 1 cut(s) 744
BsnI GGCC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 388, 406
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 5 cut(s) 91, 144, 394, 616, 718
BspACI CCGC 3 cut(s) 236, 908, 1182
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 1 cut(s) 952
BspEI TCCGGA 1 cut(s) 343
BspFNI CGCG 1 cut(s) 1182
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 2 cut(s) 397, 1178
BspQI GCTCTTC 1 cut(s) 826
BspT107I GGYRCC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 910
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 781
BssAI RCCGGY 1 cut(s) 781
BssMI GATC 5 cut(s) 91, 144, 394, 616, 718
BssSI CACGAG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 577, 742
Bst4CI ACNGT 2 cut(s) 675, 771
Bst6I CTCTTC 3 cut(s) 558, 636, 826
BstC8I GCNNGC 3 cut(s) 51, 156, 892
BstDEI CTNAG 3 cut(s) 297, 939, 1085
BstF5I GGATG 8 cut(s) 103, 119, 352, 688, 712, 969, 991, 1174
BstFNI CGCG 1 cut(s) 1182
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 5 cut(s) 94, 147, 397, 619, 721
BstMAI GTCTC 2 cut(s) 170, 744
BstMBI GATC 5 cut(s) 91, 144, 394, 616, 718
BstMWI GCNNNNNNNGC 4 cut(s) 46, 293, 443, 809
BstNI CCWGG 2 cut(s) 577, 742
BstSCI CCNGG 2 cut(s) 575, 740
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 1 cut(s) 1182
BstV1I GCAGC 4 cut(s) 58, 424, 742, 745
BstV2I GAAGAC 3 cut(s) 937, 1107, 1128
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 1 cut(s) 575
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 8 cut(s) 103, 119, 352, 688, 712, 969, 991, 1174
BveI ACCTGC 2 cut(s) 397, 1178
Cac8I GCNNGC 3 cut(s) 51, 156, 892
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 3 cut(s) 265, 884, 905
CseI GACGC 1 cut(s) 761
Csp6I GTAC 3 cut(s) 723, 772, 1069
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 1 cut(s) 1065
CviQI GTAC 3 cut(s) 723, 772, 1069
DdeI CTNAG 3 cut(s) 297, 939, 1085
DpnI GATC 5 cut(s) 93, 146, 396, 618, 720
DpnII GATC 5 cut(s) 91, 144, 394, 616, 718
DraIII CACNNNGTG 1 cut(s) 1211
Eam1104I CTCTTC 3 cut(s) 558, 636, 826
EarI CTCTTC 3 cut(s) 558, 636, 826
Eco147I AGGCCT 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 3 cut(s) 265, 884, 905
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 702
EcoRII CCWGG 2 cut(s) 575, 740
EcoT38I GRGCYC 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 1 cut(s) 1068
FaiI YATR 8 cut(s) 17, 143, 257, 294, 878, 980, 1010, 1066
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 1 cut(s) 1064
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 4 cut(s) 72, 438, 756, 759
FokI GGATG 8 cut(s) 110, 126, 359, 695, 719, 976, 998, 1181
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 4 cut(s) 72, 438, 756, 759
FspBI CTAG 2 cut(s) 54, 1146
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 72, 438, 756, 759
GsaI CCCAGC 1 cut(s) 993
GsuI CTGGAG 1 cut(s) 549
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 575
HapII CCGG 4 cut(s) 268, 344, 518, 782
HgaI GACGC 1 cut(s) 761
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 1068
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 3 cut(s) 243, 513, 996
HindII GTYRAC 3 cut(s) 243, 513, 996
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 4 cut(s) 80, 271, 514, 524
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 4 cut(s) 268, 344, 518, 782
Hpy166II GTNNAC 6 cut(s) 243, 386, 485, 513, 905, 996
Hpy188I TCNGA 3 cut(s) 79, 129, 276
Hpy8I GTNNAC 6 cut(s) 243, 386, 485, 513, 905, 996
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 6 cut(s) 298, 393, 466, 673, 821, 1159
HpyCH4III ACNGT 2 cut(s) 675, 771
HpyCH4IV ACGT 3 cut(s) 427, 481, 487
HpyCH4V TGCA 7 cut(s) 386, 440, 659, 761, 812, 978, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 293, 443, 809
HpyF3I CTNAG 3 cut(s) 297, 939, 1085
HpySE526I ACGT 3 cut(s) 427, 481, 487
Hsp92II CATG 1 cut(s) 1068
HspAI GCGC 1 cut(s) 158
Kpn2I TCCGGA 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 996
Kzo9I GATC 5 cut(s) 91, 144, 394, 616, 718
LguI GCTCTTC 1 cut(s) 826
LmnI GCTCC 2 cut(s) 334, 475
Lsp1109I GCAGC 4 cut(s) 58, 424, 742, 745
LweI GCATC 5 cut(s) 509, 697, 903, 954, 976
MaeI CTAG 2 cut(s) 54, 1146
MaeII ACGT 3 cut(s) 427, 481, 487
MaeIII GTNAC 3 cut(s) 851, 956, 1190
MalI GATC 5 cut(s) 93, 146, 396, 618, 720
MbiI CCGCTC 1 cut(s) 910
MboI GATC 5 cut(s) 91, 144, 394, 616, 718
MhlI GDGCHC 2 cut(s) 388, 406
MluCI AATT 3 cut(s) 60, 459, 588
MlyI GAGTC 2 cut(s) 89, 508
MmeI TCCRAC 3 cut(s) 336, 603, 973
MroI TCCGGA 1 cut(s) 343
MroXI GAANNNNTTC 2 cut(s) 308, 835
MseI TTAA 3 cut(s) 462, 591, 995
MspI CCGG 4 cut(s) 268, 344, 518, 782
MspR9I CCNGG 2 cut(s) 577, 742
MvaI CCWGG 2 cut(s) 577, 742
MvnI CGCG 1 cut(s) 1182
MwoI GCNNNNNNNGC 4 cut(s) 46, 293, 443, 809
NdeII GATC 5 cut(s) 91, 144, 394, 616, 718
NlaIII CATG 1 cut(s) 1068
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 2 cut(s) 851, 956
PaqCI CACCTGC 1 cut(s) 397
PceI AGGCCT 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 826
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PdmI GAANNNNTTC 2 cut(s) 308, 835
PfeI GAWTC 2 cut(s) 271, 524
PflMI CCANNNNNTGG 1 cut(s) 1065
PkrI GCNGC 4 cut(s) 73, 439, 757, 760
PleI GAGTC 2 cut(s) 88, 508
PpsI GAGTC 2 cut(s) 88, 508
Psp6I CCWGG 2 cut(s) 575, 740
PspFI CCCAGC 1 cut(s) 989
PspGI CCWGG 2 cut(s) 575, 740
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 3 cut(s) 265, 884, 905
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 724, 773, 1070
RsaNI GTAC 3 cut(s) 723, 772, 1069
SalI GTCGAC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 826
SaqAI TTAA 3 cut(s) 462, 591, 995
SatI GCNGC 4 cut(s) 72, 438, 756, 759
Sau3AI GATC 5 cut(s) 91, 144, 394, 616, 718
Sau96I GGNCC 3 cut(s) 265, 884, 905
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 2 cut(s) 89, 508
ScrFI CCNGG 2 cut(s) 577, 742
SduI GDGCHC 2 cut(s) 388, 406
SfaNI GCATC 5 cut(s) 509, 697, 903, 954, 976
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 3 cut(s) 265, 884, 905
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 60, 459, 588
SseBI AGGCCT 1 cut(s) 575
SsiI CCGC 3 cut(s) 236, 908, 1182
SspMI CTAG 2 cut(s) 54, 1146
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 2 cut(s) 575, 740
TaaI ACNGT 2 cut(s) 675, 771
TaiI ACGT 3 cut(s) 430, 484, 490
TaqI TCGA 4 cut(s) 45, 397, 512, 1155
TaqII GACCGA 1 cut(s) 872
TasI AATT 3 cut(s) 60, 459, 588
TatI WGTACW 1 cut(s) 771
TfiI GAWTC 2 cut(s) 271, 524
Tru1I TTAA 3 cut(s) 462, 591, 995
Tru9I TTAA 3 cut(s) 462, 591, 995
TseFI GTSAC 2 cut(s) 851, 956
TseI GCWGC 4 cut(s) 71, 437, 755, 758
Tsp45I GTSAC 2 cut(s) 851, 956
TspDTI ATGAA 5 cut(s) 53, 1019, 1028, 1134, 1154
Van91I CCANNNNNTGG 1 cut(s) 1065
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 3 cut(s) 265, 884, 905
XapI RAATTY 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 512
XmnI GAANNNNTTC 2 cut(s) 308, 835
XspI CTAG 2 cut(s) 54, 1146
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.