Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005371.1

Orthogroup ID

OG0008657

Physical Location & Seq

Genomic Coordinates Forward (+)

50225 .. 51011

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005371.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgggcgaactcaatatggacgatatgcctctaccggcgctgttcgagcaagctcggaaggtccatttcacggcgacggagtccggcaatgagattgatcaggaggaggtgaagaaagcgtgcagggctctggagaagtgcgatgaaatgataagcaagcttgggttgttctcaaccaacgagaccaaggaggatatcagcaccaccaatctcaagtatattatggtgccgtattatcttggtgagttgactgagaaggttgggcatgatgataggatacagattgttaaggcagctcaggcaaagttaaaggaatttgtttcgttttgtgaggcgatggaacttgtgccggaagaagagttggaagcgtctagacaagatggtccaaaatccaattcaatggctgaccgaagggctcagaaggtacttttttttttcccgatcattttgtttggaaagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006808 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009966 GO:0009967 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010646 GO:0010647 GO:0010921 GO:0019208 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019900 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030307 GO:0031323 GO:0031399 GO:0031929 GO:0032006 GO:0032008 GO:0032268 GO:0033993 GO:0035303 GO:0035304 GO:0035556 GO:0040008 GO:0042221 GO:0043666 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051241 GO:0051246 GO:0051336 GO:0051716 GO:0051721 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097305 GO:0098772 GO:1900140 GO:1901700 GO:1902531 GO:1902533 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

TAP42

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

4.9

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53000
fragaria_vesca	FvH4_7g31380 FvH4_7g31380 FvH4_7g31380
malus_domestica	MD01G1217800.v1.1 MD07G1287100.v1.1 MD07G1287400.v1.1
prunus_persica	Prupe.2G309200_v2.0.a1 Prupe.2G309200_v2.0.a1
pyrus_communis	pycom01g22790 pycom07g26040
rosa_chinensis	RchiOBHm_Chr1g0380451
rosa_laevigata	RLG00000026299
rosa_multiflora	Rmu_sc0001733.1_g000010 Rmu_sc0005371.1_g000013 Rmu_sc0006267.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279350
rosa_rugosa	Rorug01G0421200
rosa_samantha	Rh1AG445700 Rh1BG401000 Rh1CG415400 Rh1DG431100
rosa_wichuraiana	Rw1G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	3 cut(s)	53, 160, 296
AluI	AGCT	3 cut(s)	53, 160, 296
Alw26I	GTCTC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	61, 383
AsuHPI	GGTGA	2 cut(s)	121, 254
AvaII	GGWCC	2 cut(s)	61, 383
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	2 cut(s)	130, 418
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	331, 374
BceAI	ACGGC	2 cut(s)	87, 214
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme18I	GGWCC	2 cut(s)	61, 383
BmgT120I	GGNCC	2 cut(s)	61, 383
BmiI	GGNNCC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	243, 311, 431
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	35, 84, 350
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	130, 418
Bsp143I	GATC	2 cut(s)	97, 441
BspCNI	CTCAG	3 cut(s)	244, 310, 430
BspLI	GGNNCC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	97, 441
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	51, 121, 158
BstDEI	CTNAG	3 cut(s)	252, 297, 417
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	100, 444
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	97, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 125, 299
BstV1I	GCAGC	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	270
BtgZI	GCGATG	2 cut(s)	156, 350
Cac8I	GCNNGC	3 cut(s)	51, 121, 158
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	61, 383
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	2 cut(s)	266, 462
CviJI	RGCY	6 cut(s)	53, 128, 160, 296, 404, 416
CviKI_1	RGCY	6 cut(s)	53, 128, 160, 296, 404, 416
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	252, 297, 417
DpnI	GATC	2 cut(s)	99, 443
DpnII	GATC	2 cut(s)	97, 441
DrdI	GACNNNNNNGTC	1 cut(s)	381
DseDI	GACNNNNNNGTC	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	130, 418
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	61, 383
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	130, 418
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	269, 465
FaiI	YATR	6 cut(s)	17, 26, 219, 224, 267, 463
FatI	CATG	2 cut(s)	265, 461
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	294
FriOI	GRGCYC	2 cut(s)	130, 418
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	41
HapII	CCGG	3 cut(s)	35, 84, 350
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	269, 465
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	3 cut(s)	35, 84, 350
HphI	GGTGA	2 cut(s)	121, 254
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	57, 420
Hpy188III	TCNNGA	4 cut(s)	101, 131, 372, 439
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	52, 250, 405, 415
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 125, 299
HpyF3I	CTNAG	3 cut(s)	252, 297, 417
Hsp92II	CATG	2 cut(s)	269, 465
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 441
LpnPI	CCDG	7 cut(s)	48, 86, 97, 109, 116, 284, 363
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	372
MalI	GATC	2 cut(s)	99, 443
MboI	GATC	2 cut(s)	97, 441
MboII	GAAGA	3 cut(s)	124, 365, 368
MhlI	GDGCHC	2 cut(s)	130, 418
MluCI	AATT	2 cut(s)	314, 394
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	39, 97, 100, 184, 325
MseI	TTAA	2 cut(s)	288, 308
MspI	CCGG	3 cut(s)	35, 84, 350
MwoI	GCNNNNNNNGC	3 cut(s)	46, 125, 299
NdeII	GATC	2 cut(s)	97, 441
NlaIII	CATG	2 cut(s)	269, 465
NlaIV	GGNNCC	1 cut(s)	228
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	61, 383
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	288, 308
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	97, 441
Sau96I	GGNCC	2 cut(s)	61, 383
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	130, 418
SetI	ASST	7 cut(s)	55, 63, 111, 162, 261, 298, 426
SinI	GGWCC	2 cut(s)	61, 383
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	314, 394
SspMI	CTAG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	2 cut(s)	314, 394
Tru1I	TTAA	2 cut(s)	288, 308
Tru9I	TTAA	2 cut(s)	288, 308
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	92
Tth111I	GACNNNGTC	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	61, 383
XapI	RAATTY	1 cut(s)	314
XbaI	TCTAGA	1 cut(s)	371
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.