Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008657

Physical Location & Seq

Genomic Coordinates Forward (+)

66561984 .. 66564982

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG445700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGATATTTTGGAGTCTTTTATTACTTTCATTAAAAATAAAAAAATCGTTCCACGTGGCAACGCGGATCCACCATAACAACTCGGTACCTTTCCACACAGAAACTCCCCATATAAATACTTCTCCCTCTTTAATTTCCCCAAATTTCCAATCCCTTCCAGAATCCCAAATTCCCAAATCTCAAAACCCTAGAATTTTCAAATTCCGCGATTCAAAGCTTAATTCTTTGGATCATTTCTCCAAATTAACATCGATGGGCGAACTCAATATGGACGATATGCCTCTACCGGCGCTGTTCGAGCAAGCTCGGAAGGTTCATTTCACGGCAACGGAGTCCGGCAATGAGATTGATCAGGAGGAGGTGAAGAAAGCGTGCAGGGCTTTGGAGAAGTGCGATGAAATGATAAGCAAGCTTGGGTTGTTCTCAACGAACGAAACCAAGGAGGATATCAGCACCACCAATCTCAAGTATATTATGGTGCCGTATTATCTTGGTGAGCTGACTGAAAGGGTTGCACATGATGATAGGATACAGATTGTTAAGGCAGCTCAGGCTAAGTTAAAGGAATTTGTTTCGTTTTGTGAGGCGATGGAACTTGTGCCGGAAGAAGAGTTGGAAGCGTCTAGACAAGATGGTCCAAAATCCAATTCAATGGCTGACCGAAGGGCTCAGAAGATTGCTCGATTCAAACGCCAAAGAGCGGCAGAATCAAAGTTGCTGGAAATTAAGGAGAGGAGAGAGCGGAGAGGGCGTTCAACTAGAGCATCTGCCTTGTCAACTCCTATTGAGGCAGGAGATGAAGATGTGCTGGATGATGATGGAGAGGAGGAACGAGAGGCCTGGTTTACTTCTATCTCTTTGGCACTCTGTAAGGCTTTTGATCTGTTGGAAATGCTAAAGAAGGAAGAAGAGATGTTGCTAGCTTTTAAGGAAAGGCAATCAAAGGAGGGGGATAAGGAATTTTATCAAGAAGTTCTTGATGATCGCGCCCAGAGGGCTGAAGCTTGGCATCGTAATGCTGCAGCTCGAGTGCAGTATAGTAAACCAGCACAGCCTATTACATGTGCAACTTTTGCACAAGATGTTTTAGAAGGGAGAGCAAGTGTGTCACAGATGCATGAGCACAAACACCAGCCACTAATCTTTGGACCAGCAAGTCTTGTTGGTGGAAGCATAACAAGTGAGAGGGAAAGGATGGCTGCTCAGGTTTTCCAGCCTAGTCATAGGTTACCCACCATGAGCATTGAGGAAGCTGGGCTGAAGGAGATGGAGATAATGAACAAATGGCAAGAGAGGAATGTTAAACTCATGGAAGAAGCAAACTCTTCATGGTACAATGACAGTGGGAAACTGCCAGGACCGCCCCAGGAAGATGATGAAGATGATGATGCTGCTCAAGACAAGGCAAGGGCGTGGGATGACTGGAAAGACGATAATCCTCGAGGTGCTGGCAATAAGAAGCTCACCCCTTGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006808 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009966 GO:0009967 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010646 GO:0010647 GO:0010921 GO:0019208 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019900 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030307 GO:0031323 GO:0031399 GO:0031929 GO:0032006 GO:0032008 GO:0032268 GO:0033993 GO:0035303 GO:0035304 GO:0035556 GO:0040008 GO:0042221 GO:0043666 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051241 GO:0051246 GO:0051336 GO:0051716 GO:0051721 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097305 GO:0098772 GO:1900140 GO:1901700 GO:1902531 GO:1902533 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

TAP42

Protein Analysis

492

Amino Acids

56.11

Weight (kDa)

5.51

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAP42	PF04177	95 - 480	1.2e-90	TAP42-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53000
fragaria_vesca	FvH4_7g31380 FvH4_7g31380 FvH4_7g31380
malus_domestica	MD01G1217800.v1.1 MD07G1287100.v1.1 MD07G1287400.v1.1
prunus_persica	Prupe.2G309200_v2.0.a1 Prupe.2G309200_v2.0.a1
pyrus_communis	pycom01g22790 pycom07g26040
rosa_chinensis	RchiOBHm_Chr1g0380451
rosa_laevigata	RLG00000026299
rosa_multiflora	Rmu_sc0001733.1_g000010 Rmu_sc0005371.1_g000013 Rmu_sc0006267.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279350
rosa_rugosa	Rorug01G0421200
rosa_samantha	Rh1AG445700 Rh1BG401000 Rh1CG415400 Rh1DG431100
rosa_wichuraiana	Rw1G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	633, 1155
AbsI	CCTCGAGG	1 cut(s)	1440
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	2 cut(s)	85, 478
AccBSI	CCGCTC	2 cut(s)	701, 742
AccII	CGCG	3 cut(s)	64, 207, 987
AciI	CCGC	5 cut(s)	64, 205, 701, 742, 1361
AclWI	GGATC	3 cut(s)	61, 74, 237
AcsI	RAATTY	6 cut(s)	142, 168, 192, 200, 566, 959
AcuI	CTGAAG	2 cut(s)	1020, 1280
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	2 cut(s)	87, 1334
AfiI	CCNNNNNNNGG	1 cut(s)	700
AflIII	ACRYGT	1 cut(s)	1061
AgsI	TTSAA	5 cut(s)	199, 213, 651, 688, 756
AjnI	CCWGG	3 cut(s)	839, 1354, 1365
AjuI	GAANNNNNNNTTGG	2 cut(s)	631, 663
AloI	GAACNNNNNNTCC	2 cut(s)	736, 768
Alw21I	GWGCWC	1 cut(s)	1125
AlwI	GGATC	3 cut(s)	61, 74, 237
Ama87I	CYCGRG	2 cut(s)	1026, 1440
AoxI	GGCC	1 cut(s)	837
ApeKI	GCWGC	5 cut(s)	545, 1019, 1022, 1199, 1391
ApoI	RAATTY	6 cut(s)	142, 168, 192, 200, 566, 959
Asp718I	GGTACC	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	292, 989
AspS9I	GGNCC	3 cut(s)	635, 1148, 1358
AsuHPI	GGTGA	3 cut(s)	373, 506, 1456
AsuNHI	GCTAGC	1 cut(s)	919
AvaI	CYCGRG	2 cut(s)	1026, 1440
AvaII	GGWCC	3 cut(s)	635, 1148, 1358
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	2 cut(s)	85, 478
BanII	GRGCYC	1 cut(s)	670
BbrPI	CACGTG	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	1125
BbvI	GCAGC	5 cut(s)	557, 1006, 1034, 1186, 1378
BccI	CCATC	6 cut(s)	247, 583, 626, 812, 1189, 1261
BceAI	ACGGC	2 cut(s)	339, 466
BciT130I	CCWGG	3 cut(s)	841, 1356, 1367
BciVI	GTATCC	1 cut(s)	522
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	5 cut(s)	189, 624, 759, 920, 1218
BfmI	CTRYAG	1 cut(s)	1020
BfoI	RGCGCY	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	522
BglI	GCCNNNNNGGC	1 cut(s)	995
BisI	GCNGC	6 cut(s)	546, 702, 1020, 1023, 1200, 1392
BlsI	GCNGC	6 cut(s)	547, 703, 1021, 1024, 1201, 1393
Bme1390I	CCNGG	3 cut(s)	841, 1356, 1367
Bme18I	GGWCC	3 cut(s)	635, 1148, 1358
BmeT110I	CYCGRG	2 cut(s)	1026, 1440
BmgT120I	GGNCC	3 cut(s)	635, 1148, 1358
BmiI	GGNNCC	3 cut(s)	68, 87, 480
BmrFI	CCNGG	3 cut(s)	841, 1356, 1367
BmsI	GCATC	4 cut(s)	773, 1018, 1104, 1378
BmtI	GCTAGC	1 cut(s)	923
Bpu10I	CCTNAGC	2 cut(s)	549, 1203
BpuEI	CTTGAG	2 cut(s)	449, 1380
Bsa29I	ATCGAT	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	438, 1365
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 736, 766, 1087, 1117
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	1427
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	841, 1356, 1367
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	438, 1365
BseGI	GGATG	3 cut(s)	817, 1200, 1423
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	3 cut(s)	563, 683, 1217
BseNI	ACTGG	1 cut(s)	1427
BseRI	GAGGAG	3 cut(s)	371, 748, 839
BseXI	GCAGC	5 cut(s)	557, 1006, 1034, 1186, 1378
BseYI	CCCAGC	1 cut(s)	1253
BsgI	GTGCAG	2 cut(s)	394, 1052
Bsh1236I	CGCG	3 cut(s)	64, 207, 987
BshFI	GGCC	1 cut(s)	839
BshNI	GGYRCC	2 cut(s)	85, 478
BshVI	ATCGAT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	1125
BsiHKCI	CYCGRG	2 cut(s)	1026, 1440
BsiSI	CCGG	3 cut(s)	287, 336, 602
BslI	CCNNNNNNNGG	1 cut(s)	700
BsnI	GGCC	1 cut(s)	839
BsoBI	CYCGRG	2 cut(s)	1026, 1440
Bsp1286I	GDGCHC	2 cut(s)	670, 1125
Bsp143I	GATC	5 cut(s)	66, 229, 349, 880, 982
BspACI	CCGC	5 cut(s)	64, 205, 701, 742, 1361
BspANI	GGCC	1 cut(s)	839
BspCNI	CTCAG	3 cut(s)	562, 682, 1216
BspDI	ATCGAT	1 cut(s)	251
BspFNI	CGCG	3 cut(s)	64, 207, 987
BspLI	GGNNCC	3 cut(s)	68, 87, 480
BspMAI	CTGCAG	1 cut(s)	1024
BspOI	GCTAGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	61, 74, 237
BspT107I	GGYRCC	2 cut(s)	85, 478
BsrBI	CCGCTC	2 cut(s)	701, 742
BsrDI	GCAATG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	1427
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	438, 1365
BssMI	GATC	5 cut(s)	66, 229, 349, 880, 982
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	3 cut(s)	841, 1356, 1367
Bst4CI	ACNGT	1 cut(s)	1343
Bst6I	CTCTTC	3 cut(s)	603, 903, 1330
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	5 cut(s)	303, 373, 410, 921, 1450
BstDEI	CTNAG	4 cut(s)	549, 555, 669, 1203
BstEII	GGTNACC	1 cut(s)	1227
BstF5I	GGATG	3 cut(s)	817, 1200, 1423
BstFNI	CGCG	3 cut(s)	64, 207, 987
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	292, 989
BstKTI	GATC	5 cut(s)	69, 232, 352, 883, 985
BstMBI	GATC	5 cut(s)	66, 229, 349, 880, 982
BstMWI	GCNNNNNNNGC	7 cut(s)	298, 377, 551, 748, 995, 1073, 1360
BstNI	CCWGG	3 cut(s)	841, 1356, 1367
BstNSI	RCATGY	1 cut(s)	1065
BstPI	GGTNACC	1 cut(s)	1227
BstSCI	CCNGG	3 cut(s)	839, 1354, 1365
BstSFI	CTRYAG	1 cut(s)	1020
BstUI	CGCG	3 cut(s)	64, 207, 987
BstV1I	GCAGC	5 cut(s)	557, 1006, 1034, 1186, 1378
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	839
BsuTUI	ATCGAT	1 cut(s)	251
BtgZI	GCGATG	2 cut(s)	408, 602
BtsCI	GGATG	3 cut(s)	817, 1200, 1423
BtsIMutI	CAGTG	1 cut(s)	1348
Cac8I	GCNNGC	5 cut(s)	303, 373, 410, 921, 1450
CfoI	GCGC	2 cut(s)	292, 989
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	635, 1148, 1358
ClaI	ATCGAT	1 cut(s)	251
CseI	GACGC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	86, 1333
CspCI	CAANNNNNGTGG	2 cut(s)	1324, 1359
CviAII	CATG	6 cut(s)	518, 1062, 1118, 1237, 1309, 1329
CviQI	GTAC	2 cut(s)	86, 1333
DdeI	CTNAG	4 cut(s)	549, 555, 669, 1203
DpnI	GATC	5 cut(s)	68, 231, 351, 882, 984
DpnII	GATC	5 cut(s)	66, 229, 349, 880, 982
DrdI	GACNNNNNNGTC	2 cut(s)	633, 1155
DseDI	GACNNNNNNGTC	2 cut(s)	633, 1155
Eam1104I	CTCTTC	3 cut(s)	603, 903, 1330
EarI	CTCTTC	3 cut(s)	603, 903, 1330
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	3 cut(s)	635, 1148, 1358
Eco57I	CTGAAG	2 cut(s)	1020, 1280
Eco72I	CACGTG	1 cut(s)	55
Eco88I	CYCGRG	2 cut(s)	1026, 1440
Eco91I	GGTNACC	1 cut(s)	1227
EcoO65I	GGTNACC	1 cut(s)	1227
EcoRII	CCWGG	3 cut(s)	839, 1354, 1365
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	1119
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	6 cut(s)	521, 1065, 1121, 1240, 1312, 1332
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FatI	CATG	6 cut(s)	517, 1061, 1117, 1236, 1308, 1328
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	6 cut(s)	546, 702, 1020, 1023, 1200, 1392
FokI	GGATG	3 cut(s)	824, 1207, 1430
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	6 cut(s)	546, 702, 1020, 1023, 1200, 1392
FspBI	CTAG	5 cut(s)	189, 624, 759, 920, 1218
GlaI	GCGC	2 cut(s)	291, 988
GluI	GCNGC	6 cut(s)	546, 702, 1020, 1023, 1200, 1392
GsaI	CCCAGC	1 cut(s)	1257
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	839
HapII	CCGG	3 cut(s)	287, 336, 602
HgaI	GACGC	1 cut(s)	609
HhaI	GCGC	2 cut(s)	292, 989
Hin1II	CATG	6 cut(s)	521, 1065, 1121, 1240, 1312, 1332
Hin6I	GCGC	2 cut(s)	290, 987
HinP1I	GCGC	2 cut(s)	290, 987
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HindIII	AAGCTT	3 cut(s)	215, 410, 1002
HinfI	GANTC	6 cut(s)	13, 161, 209, 332, 684, 707
HpaII	CCGG	3 cut(s)	287, 336, 602
HphI	GGTGA	3 cut(s)	373, 506, 1456
Hpy166II	GTNNAC	3 cut(s)	777, 846, 1043
Hpy188I	TCNGA	2 cut(s)	309, 672
Hpy188III	TCNNGA	6 cut(s)	158, 353, 624, 968, 977, 1397
Hpy8I	GTNNAC	3 cut(s)	777, 846, 1043
HpyAV	CCTTC	6 cut(s)	164, 304, 657, 895, 1085, 1255
HpyCH4III	ACNGT	1 cut(s)	1343
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	7 cut(s)	375, 515, 1022, 1033, 1067, 1076, 1117
HpyF10VI	GCNNNNNNNGC	7 cut(s)	298, 377, 551, 748, 995, 1073, 1360
HpyF3I	CTNAG	4 cut(s)	549, 555, 669, 1203
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	521, 1065, 1121, 1240, 1312, 1332
HspAI	GCGC	2 cut(s)	290, 987
KpnI	GGTACC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	66, 229, 349, 880, 982
Lsp1109I	GCAGC	5 cut(s)	557, 1006, 1034, 1186, 1378
LweI	GCATC	4 cut(s)	773, 1018, 1104, 1378
MaeI	CTAG	5 cut(s)	189, 624, 759, 920, 1218
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	1107, 1227
MalI	GATC	5 cut(s)	68, 231, 351, 882, 984
MbiI	CCGCTC	2 cut(s)	701, 742
MboI	GATC	5 cut(s)	66, 229, 349, 880, 982
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	670, 1125
MlyI	GAGTC	2 cut(s)	22, 341
MmeI	TCCRAC	2 cut(s)	594, 867
Mph1103I	ATGCAT	1 cut(s)	1119
MseI	TTAA	9 cut(s)	32, 131, 219, 245, 540, 560, 726, 927, 1302
MslI	CAYNNNNRTG	1 cut(s)	1014
MspI	CCGG	3 cut(s)	287, 336, 602
MspR9I	CCNGG	3 cut(s)	841, 1356, 1367
MvaI	CCWGG	3 cut(s)	841, 1356, 1367
MvnI	CGCG	3 cut(s)	64, 207, 987
MwoI	GCNNNNNNNGC	7 cut(s)	298, 377, 551, 748, 995, 1073, 1360
NdeII	GATC	5 cut(s)	66, 229, 349, 880, 982
NheI	GCTAGC	1 cut(s)	919
NlaIII	CATG	6 cut(s)	521, 1065, 1121, 1240, 1312, 1332
NlaIV	GGNNCC	3 cut(s)	68, 87, 480
NmuCI	GTSAC	1 cut(s)	1107
NsiI	ATGCAT	1 cut(s)	1119
NspI	RCATGY	1 cut(s)	1065
PaeR7I	CTCGAG	2 cut(s)	1026, 1440
PceI	AGGCCT	1 cut(s)	839
PciI	ACATGT	1 cut(s)	1061
PfeI	GAWTC	4 cut(s)	161, 209, 684, 707
PkrI	GCNGC	6 cut(s)	547, 703, 1021, 1024, 1201, 1393
PleI	GAGTC	2 cut(s)	21, 340
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	2 cut(s)	21, 340
Ppu21I	YACGTR	1 cut(s)	55
PscI	ACATGT	1 cut(s)	1061
Psp6I	CCWGG	3 cut(s)	839, 1354, 1365
PspCI	CACGTG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	1227
PspFI	CCCAGC	1 cut(s)	1253
PspGI	CCWGG	3 cut(s)	839, 1354, 1365
PspN4I	GGNNCC	3 cut(s)	68, 87, 480
PspPI	GGNCC	3 cut(s)	635, 1148, 1358
PspXI	VCTCGAGB	2 cut(s)	1026, 1440
PstI	CTGCAG	1 cut(s)	1024
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	2 cut(s)	87, 1334
RsaNI	GTAC	2 cut(s)	86, 1333
RseI	CAYNNNNRTG	1 cut(s)	1014
SaqAI	TTAA	9 cut(s)	32, 131, 219, 245, 540, 560, 726, 927, 1302
SatI	GCNGC	6 cut(s)	546, 702, 1020, 1023, 1200, 1392
Sau3AI	GATC	5 cut(s)	66, 229, 349, 880, 982
Sau96I	GGNCC	3 cut(s)	635, 1148, 1358
SchI	GAGTC	2 cut(s)	22, 341
ScrFI	CCNGG	3 cut(s)	841, 1356, 1367
SduI	GDGCHC	2 cut(s)	670, 1125
SfaNI	GCATC	4 cut(s)	773, 1018, 1104, 1378
SfcI	CTRYAG	1 cut(s)	1020
Sfr274I	CTCGAG	2 cut(s)	1026, 1440
SinI	GGWCC	3 cut(s)	635, 1148, 1358
SlaI	CTCGAG	2 cut(s)	1026, 1440
SmiMI	CAYNNNNRTG	1 cut(s)	1014
SmlI	CTYRAG	4 cut(s)	464, 1026, 1395, 1440
SmoI	CTYRAG	4 cut(s)	464, 1026, 1395, 1440
SseBI	AGGCCT	1 cut(s)	839
SsiI	CCGC	5 cut(s)	64, 205, 701, 742, 1361
SspMI	CTAG	5 cut(s)	189, 624, 759, 920, 1218
StuI	AGGCCT	1 cut(s)	839
StyD4I	CCNGG	3 cut(s)	839, 1354, 1365
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	1343
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	5 cut(s)	251, 297, 682, 1027, 1441
TaqII	GACCGA	1 cut(s)	675
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	4 cut(s)	161, 209, 684, 707
Tru1I	TTAA	9 cut(s)	32, 131, 219, 245, 540, 560, 726, 927, 1302
Tru9I	TTAA	9 cut(s)	32, 131, 219, 245, 540, 560, 726, 927, 1302
TscAI	CASTG	1 cut(s)	1348
TseFI	GTSAC	1 cut(s)	1107
TseI	GCWGC	5 cut(s)	545, 1019, 1022, 1199, 1391
Tsp45I	GTSAC	1 cut(s)	1107
TspDTI	ATGAA	7 cut(s)	18, 305, 411, 813, 1292, 1317, 1392
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	1348
VpaK11BI	GGWCC	3 cut(s)	635, 1148, 1358
XapI	RAATTY	6 cut(s)	142, 168, 192, 200, 566, 959
XbaI	TCTAGA	1 cut(s)	623
XceI	RCATGY	1 cut(s)	1065
XhoI	CTCGAG	2 cut(s)	1026, 1440
XspI	CTAG	5 cut(s)	189, 624, 759, 920, 1218
Zsp2I	ATGCAT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.