Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008657

Physical Location & Seq

Genomic Coordinates Forward (+)

67671693 .. 67678676

Gene Structure 6984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG415400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGCGAACTCAATATGGACGATATGCCTCTACCGGCGCTGTTCGAGCAAGCTCGGAAGGTCCATTTCACGGCGACGGAGTCCGGCAATGAGATTGATCAGGAGGAGGTGAAGAAAGCGTGCAGGGCTCTGGAGAAGTGCGATGAAATGATAAGCAAGCTTGGGTTGTTCTCAACCAACGAGACCAAGGAGGATATCAGCACCACCAATCTCAAGTATATTATGGTGCCGTATTATCTTGGTGAGTTGACTGAGAAGGTTGGGCATGATGATAGGATACAGATTGTTAAGGCAGCTCAGGCTAAGTTAAAGGAATTTGTTTCGTTTTGTGAGGCGATGGAACTTGTGCCGGAAGAAGAGTTGGAAGCGTCTAGACAAGATGGTCCAAAATCCAATTCAATGGCTGACCGAAGGGCTCAGAAGATTGCTCGATTCAAACGCCAAAGAGCGGCAGAATCAAAGTTGCTGGAAATTAAGGAGAGGAAAGAGCGGAGAGGGCGTTCGACTAGAGCTTCTGCCTTGTCAACTCCTATTGAGGCAGGAGATGAAGATGTCCTGGATGATGATGGAGAAGAGGAACGAGAGGCCTGGTTTACTTCTATCTCTTTGGCACTCTGTAAGGCTTTTGATCTATTGGAAATGCTAAAGAAGGAAGAAGAGATGTTGCTAGCTTTTAAGCAAAGGCAATCAAAGGAGGGGGATAAGGAATTTTATCAAGAAGTTCTTGATGATCGCGCTCAGAGGGCTGAAGCTTGGCATCGTAATGCTGCAGCTCAAGTGCAGTATAGTAAACCAGCACAGCCCATCACATGTGCAACTTTTGCACAAGATGTTTTAGAAGGGAGAGCAAGTGTGTCACAGATGCATGAGCACAAACACCAGCCTCTAATCTTTGGACCAGCAAGTCTTGTTGGTGGAAGCATAACAAGTGAGAGGGAAAGGATGGCAGCTCAGGTTTTCCAGCCTAGTCATAGGTACCTTTCTAAGAGTATCTCTCTGAATTCTGAAAGTATATGGTTGTTATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006808 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009966 GO:0009967 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010646 GO:0010647 GO:0010921 GO:0019208 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019900 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030307 GO:0031323 GO:0031399 GO:0031929 GO:0032006 GO:0032008 GO:0032268 GO:0033993 GO:0035303 GO:0035304 GO:0035556 GO:0040008 GO:0042221 GO:0043666 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051241 GO:0051246 GO:0051336 GO:0051716 GO:0051721 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097305 GO:0098772 GO:1900140 GO:1901700 GO:1902531 GO:1902533 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

TAP42

Protein Analysis

343

Amino Acids

39.02

Weight (kDa)

5.3

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAP42	PF04177	11 - 326	1e-68	TAP42-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53000
fragaria_vesca	FvH4_7g31380 FvH4_7g31380 FvH4_7g31380
malus_domestica	MD01G1217800.v1.1 MD07G1287100.v1.1 MD07G1287400.v1.1
prunus_persica	Prupe.2G309200_v2.0.a1 Prupe.2G309200_v2.0.a1
pyrus_communis	pycom01g22790 pycom07g26040
rosa_chinensis	RchiOBHm_Chr1g0380451
rosa_laevigata	RLG00000026299
rosa_multiflora	Rmu_sc0001733.1_g000010 Rmu_sc0005371.1_g000013 Rmu_sc0006267.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279350
rosa_rugosa	Rorug01G0421200
rosa_samantha	Rh1AG445700 Rh1BG401000 Rh1CG415400 Rh1DG431100
rosa_wichuraiana	Rw1G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	381, 903
Acc65I	GGTACC	1 cut(s)	975
AccB1I	GGYRCC	2 cut(s)	226, 975
AccBSI	CCGCTC	2 cut(s)	449, 490
AccII	CGCG	1 cut(s)	735
AciI	CCGC	2 cut(s)	449, 490
AcsI	RAATTY	3 cut(s)	314, 707, 1000
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	1 cut(s)	977
AfiI	CCNNNNNNNGG	2 cut(s)	70, 448
AflIII	ACRYGT	1 cut(s)	809
AgsI	TTSAA	2 cut(s)	399, 436
AjnI	CCWGG	2 cut(s)	555, 587
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	8 cut(s)	53, 160, 296, 512, 671, 752, 773, 950
AluI	AGCT	8 cut(s)	53, 160, 296, 512, 671, 752, 773, 950
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	4 cut(s)	293, 767, 770, 947
ApoI	RAATTY	3 cut(s)	314, 707, 1000
Asp718I	GGTACC	1 cut(s)	975
AspLEI	GCGC	2 cut(s)	40, 737
AspS9I	GGNCC	3 cut(s)	61, 383, 896
AsuHPI	GGTGA	2 cut(s)	121, 254
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	3 cut(s)	61, 383, 896
BanI	GGYRCC	2 cut(s)	226, 975
BanII	GRGCYC	2 cut(s)	130, 418
Bbv12I	GWGCWC	1 cut(s)	873
BbvI	GCAGC	4 cut(s)	305, 754, 782, 959
BccI	CCATC	5 cut(s)	331, 374, 560, 812, 937
BceAI	ACGGC	2 cut(s)	87, 214
BciT130I	CCWGG	2 cut(s)	557, 589
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	4 cut(s)	372, 507, 668, 966
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	5 cut(s)	294, 450, 768, 771, 948
BlsI	GCNGC	5 cut(s)	295, 451, 769, 772, 949
Bme1390I	CCNGG	2 cut(s)	557, 589
Bme18I	GGWCC	3 cut(s)	61, 383, 896
BmgT120I	GGNCC	3 cut(s)	61, 383, 896
BmiI	GGNNCC	2 cut(s)	228, 977
BmrFI	CCNGG	2 cut(s)	557, 589
BmsI	GCATC	2 cut(s)	766, 852
BmtI	GCTAGC	1 cut(s)	671
BplI	GAGNNNNNCTC	2 cut(s)	979, 1011
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	2 cut(s)	297, 951
BpuEI	CTTGAG	2 cut(s)	197, 759
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	484, 514, 835, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 448
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	557, 589
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	565, 948
BseLI	CCNNNNNNNGG	2 cut(s)	70, 448
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	5 cut(s)	243, 311, 431, 752, 965
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	305, 754, 782, 959
BsgI	GTGCAG	2 cut(s)	142, 800
Bsh1236I	CGCG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	2 cut(s)	226, 975
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	3 cut(s)	35, 84, 350
BslI	CCNNNNNNNGG	2 cut(s)	70, 448
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	587
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	130, 418, 873
Bsp143I	GATC	3 cut(s)	97, 628, 730
BspACI	CCGC	2 cut(s)	449, 490
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	5 cut(s)	244, 310, 430, 751, 964
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	2 cut(s)	228, 977
BspMAI	CTGCAG	1 cut(s)	772
BspOI	GCTAGC	1 cut(s)	671
BspT107I	GGYRCC	2 cut(s)	226, 975
BspTNI	GGTCTC	1 cut(s)	176
BsrBI	CCGCTC	2 cut(s)	449, 490
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	97, 628, 730
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	557, 589
Bst6I	CTCTTC	3 cut(s)	351, 567, 651
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstC8I	GCNNGC	4 cut(s)	51, 121, 158, 669
BstDEI	CTNAG	7 cut(s)	252, 297, 303, 417, 738, 951, 984
BstF5I	GGATG	2 cut(s)	565, 948
BstFNI	CGCG	1 cut(s)	735
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 737
BstKTI	GATC	3 cut(s)	100, 631, 733
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	97, 628, 730
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 125, 299, 496, 743, 821
BstNI	CCWGG	2 cut(s)	557, 589
BstNSI	RCATGY	1 cut(s)	813
BstSCI	CCNGG	2 cut(s)	555, 587
BstSFI	CTRYAG	1 cut(s)	768
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	4 cut(s)	305, 754, 782, 959
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	587
BtgZI	GCGATG	2 cut(s)	156, 350
BtsCI	GGATG	2 cut(s)	565, 948
Cac8I	GCNNGC	4 cut(s)	51, 121, 158, 669
CfoI	GCGC	2 cut(s)	40, 737
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	61, 383, 896
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	976
CviAII	CATG	3 cut(s)	266, 810, 866
CviQI	GTAC	1 cut(s)	976
DdeI	CTNAG	7 cut(s)	252, 297, 303, 417, 738, 951, 984
DpnI	GATC	3 cut(s)	99, 630, 732
DpnII	GATC	3 cut(s)	97, 628, 730
DrdI	GACNNNNNNGTC	2 cut(s)	381, 903
DseDI	GACNNNNNNGTC	2 cut(s)	381, 903
Eam1104I	CTCTTC	3 cut(s)	351, 567, 651
EarI	CTCTTC	3 cut(s)	351, 567, 651
Eco130I	CCWWGG	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	2 cut(s)	130, 418
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	61, 383, 896
Eco57I	CTGAAG	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	1000
EcoRII	CCWGG	2 cut(s)	555, 587
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	867
EcoT38I	GRGCYC	2 cut(s)	130, 418
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	269, 813, 869
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FatI	CATG	3 cut(s)	265, 809, 865
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	294, 450, 768, 771, 948
FokI	GGATG	2 cut(s)	572, 955
FriOI	GRGCYC	2 cut(s)	130, 418
Fsp4HI	GCNGC	5 cut(s)	294, 450, 768, 771, 948
FspBI	CTAG	4 cut(s)	372, 507, 668, 966
GlaI	GCGC	2 cut(s)	39, 736
GluI	GCNGC	5 cut(s)	294, 450, 768, 771, 948
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	3 cut(s)	35, 84, 350
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	2 cut(s)	40, 737
Hin1II	CATG	3 cut(s)	269, 813, 869
Hin6I	GCGC	2 cut(s)	38, 735
HinP1I	GCGC	2 cut(s)	38, 735
HincII	GTYRAC	2 cut(s)	249, 525
HindII	GTYRAC	2 cut(s)	249, 525
HindIII	AAGCTT	2 cut(s)	158, 750
HinfI	GANTC	3 cut(s)	80, 432, 455
HpaII	CCGG	3 cut(s)	35, 84, 350
HphI	GGTGA	2 cut(s)	121, 254
Hpy166II	GTNNAC	4 cut(s)	249, 525, 594, 791
Hpy188I	TCNGA	6 cut(s)	57, 420, 741, 999, 1006, 1031
Hpy188III	TCNNGA	5 cut(s)	101, 131, 372, 716, 725
Hpy8I	GTNNAC	4 cut(s)	249, 525, 594, 791
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	52, 250, 405, 643, 833
HpyCH4V	TGCA	6 cut(s)	123, 770, 781, 815, 824, 865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 125, 299, 496, 743, 821
HpyF3I	CTNAG	7 cut(s)	252, 297, 303, 417, 738, 951, 984
Hsp92II	CATG	3 cut(s)	269, 813, 869
HspAI	GCGC	2 cut(s)	38, 735
KpnI	GGTACC	1 cut(s)	979
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	97, 628, 730
Lsp1109I	GCAGC	4 cut(s)	305, 754, 782, 959
LweI	GCATC	2 cut(s)	766, 852
MaeI	CTAG	4 cut(s)	372, 507, 668, 966
MaeIII	GTNAC	1 cut(s)	855
MalI	GATC	3 cut(s)	99, 630, 732
MbiI	CCGCTC	2 cut(s)	449, 490
MboI	GATC	3 cut(s)	97, 628, 730
MboII	GAAGA	8 cut(s)	124, 365, 368, 433, 560, 584, 665, 668
MhlI	GDGCHC	3 cut(s)	130, 418, 873
MluCI	AATT	5 cut(s)	314, 394, 471, 707, 1000
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	867
MseI	TTAA	4 cut(s)	288, 308, 474, 675
MslI	CAYNNNNRTG	1 cut(s)	762
MspI	CCGG	3 cut(s)	35, 84, 350
MspR9I	CCNGG	2 cut(s)	557, 589
MvaI	CCWGG	2 cut(s)	557, 589
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	6 cut(s)	46, 125, 299, 496, 743, 821
NdeII	GATC	3 cut(s)	97, 628, 730
NheI	GCTAGC	1 cut(s)	667
NlaIII	CATG	3 cut(s)	269, 813, 869
NlaIV	GGNNCC	2 cut(s)	228, 977
NmuCI	GTSAC	1 cut(s)	855
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	1 cut(s)	813
PceI	AGGCCT	1 cut(s)	587
PciI	ACATGT	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	432, 455
PflFI	GACNNNGTC	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	5 cut(s)	295, 451, 769, 772, 949
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	809
Psp6I	CCWGG	2 cut(s)	555, 587
PspGI	CCWGG	2 cut(s)	555, 587
PspN4I	GGNNCC	2 cut(s)	228, 977
PspPI	GGNCC	3 cut(s)	61, 383, 896
PstI	CTGCAG	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	977
RsaNI	GTAC	1 cut(s)	976
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	288, 308, 474, 675
SatI	GCNGC	5 cut(s)	294, 450, 768, 771, 948
Sau3AI	GATC	3 cut(s)	97, 628, 730
Sau96I	GGNCC	3 cut(s)	61, 383, 896
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	557, 589
SduI	GDGCHC	3 cut(s)	130, 418, 873
SfaNI	GCATC	2 cut(s)	766, 852
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	3 cut(s)	61, 383, 896
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	2 cut(s)	212, 774
SmoI	CTYRAG	2 cut(s)	212, 774
Sse9I	AATT	5 cut(s)	314, 394, 471, 707, 1000
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	2 cut(s)	449, 490
SspMI	CTAG	4 cut(s)	372, 507, 668, 966
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	555, 587
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	3 cut(s)	45, 430, 503
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	5 cut(s)	314, 394, 471, 707, 1000
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	432, 455
Tru1I	TTAA	4 cut(s)	288, 308, 474, 675
Tru9I	TTAA	4 cut(s)	288, 308, 474, 675
TseFI	GTSAC	1 cut(s)	855
TseI	GCWGC	4 cut(s)	293, 767, 770, 947
Tsp45I	GTSAC	1 cut(s)	855
TspDTI	ATGAA	2 cut(s)	159, 561
TspGWI	ACGGA	1 cut(s)	92
Tth111I	GACNNNGTC	1 cut(s)	79
VpaK11BI	GGWCC	3 cut(s)	61, 383, 896
XapI	RAATTY	3 cut(s)	314, 707, 1000
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	1 cut(s)	813
XspI	CTAG	4 cut(s)	372, 507, 668, 966
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.