AT5G53045

Other Eukaryotes - 5 (source NCBI BLink)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013541
Physical Location & Seq
Reverse (-)
21508341 .. 21509609
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53045.1

Sequence Viewer

Length: 291 bp
ATGGCTGCCACTGTTCCTGCAACTACTCGTTCTGATCAAACATGGGATTTTAGTTGTAATTTGGATGTGAGTTTTGAATCAGAAGAACATGCTTTGATTGCTTATACATCATTGGCTGTTGATAAAGAGTTGCAGCCTGATAAGGTGAGAAGAGTTATGTCAGTATCAAACAACAAGCTTTCTGTGCACTTTGAAGCAATAGAGGCAAGGCTGCTTCGCGCTTCGTTCTCTGCATTTGTAGACGTTCTTACACTGGCCACAAGAACAATTCAAGAATTTGGTCAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pcc1

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

5.25

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pcc1 PF09341 18 - 91 2.1e-24 Transcription factor Pcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53045
fragaria_vesca FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis pycom01g23190 pycom07g26610
rosa_chinensis RchiOBHm_Chr1g0381471
rosa_roxburghii Rroxscaffold_4G00278640
rosa_rugosa Rorug01G0428700
rosa_samantha Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana Rw1G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 275
AgsI TTSAA 3 cut(s) 77, 194, 272
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 185
AoxI GGCC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 5, 133, 211
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 145, 198
BclI TGATCA 1 cut(s) 34
BisI GCNGC 3 cut(s) 6, 134, 212
BlsI GCNGC 3 cut(s) 7, 135, 213
Bse1I ACTGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 145, 198
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 189
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 257
BspFNI CGCG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 258
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 145
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 98, 184, 203
BstNSI RCATGY 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 189
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 145, 198
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 9, 251
CfoI GCGC 1 cut(s) 221
CviAII CATG 2 cut(s) 42, 89
CviJI RGCY 6 cut(s) 5, 116, 136, 178, 211, 257
CviKI_1 RGCY 6 cut(s) 5, 116, 136, 178, 211, 257
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
FaeI CATG 2 cut(s) 45, 92
FaiI YATR 4 cut(s) 43, 90, 105, 158
FatI CATG 2 cut(s) 41, 88
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 6, 134, 212
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 6, 134, 212
GlaI GCGC 1 cut(s) 220
GluI GCNGC 3 cut(s) 6, 134, 212
HaeIII GGCC 1 cut(s) 257
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 45, 92
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 77
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 187, 241
Hpy188I TCNGA 2 cut(s) 34, 82
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 187, 241
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 20, 133, 187, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 184, 203
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 2 cut(s) 45, 92
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 30, 150, 239
Lsp1109I GCAGC 2 cut(s) 145, 198
MaeII ACGT 1 cut(s) 243
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 95, 162
MhlI GDGCHC 1 cut(s) 189
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 3 cut(s) 58, 267, 275
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 1 cut(s) 196
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 98, 184, 203
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 45, 92
NspI RCATGY 1 cut(s) 92
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 3 cut(s) 7, 135, 213
SatI GCNGC 3 cut(s) 6, 134, 212
Sau3AI GATC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 147, 180, 246
Sse9I AATT 3 cut(s) 58, 267, 275
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 246
TasI AATT 3 cut(s) 58, 267, 275
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 2 cut(s) 16, 258
TseI GCWGC 3 cut(s) 5, 133, 211
TspRI CASTG 2 cut(s) 16, 258
VneI GTGCAC 1 cut(s) 185
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.