Rh1CG423700

Transcription factor Pcc1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013541
Physical Location & Seq
Reverse (-)
68295684 .. 68297320
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG423700.1

Sequence Viewer

Length: 300 bp
ATGGCTGCTATGGCTTCTGACAAGGCAGCTGGGCAGACGCAGTGGGAGTTTAGCTGTGACTTGGAGGTAGATTATGAGTCTGAAGAAATTGCTTCTATTGTCTACGCAACATTAGCTGTTGATAAGGAGTTGCAACCGGACAAAGTAAAAAGGCAGATGTCAGTTTCTAATGGAAAGCTTTCAGTGCATTTTGAGGCAGTTGAGGCAAGATTTCTTCGAGCATCATATAGTGCTTTTGTGGACGTATTGACACTTGCCACGAAAGCAATTGAAGAATTTGGAAAAGGAATGGACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pcc1

Protein Analysis

99

Amino Acids

10.93

Weight (kDa)

4.57

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pcc1 PF09341 18 - 91 8.3e-23 Transcription factor Pcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53045
fragaria_vesca FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis pycom01g23190 pycom07g26610
rosa_chinensis RchiOBHm_Chr1g0381471
rosa_roxburghii Rroxscaffold_4G00278640
rosa_rugosa Rorug01G0428700
rosa_samantha Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana Rw1G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 4 cut(s) 29, 54, 116, 178
AluI AGCT 4 cut(s) 29, 54, 116, 178
ApeKI GCWGC 2 cut(s) 5, 26
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 38
BisI GCNGC 2 cut(s) 6, 27
BlsI GCNGC 2 cut(s) 7, 28
BmsI GCATC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 136
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 137
BstMWI GCNNNNNNNGC 5 cut(s) 11, 113, 184, 203, 263
BstV1I GCAGC 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 47, 189
CseI GACGC 1 cut(s) 46
CviJI RGCY 6 cut(s) 5, 14, 29, 54, 116, 178
CviKI_1 RGCY 6 cut(s) 5, 14, 29, 54, 116, 178
Eco57I CTGAAG 1 cut(s) 102
FaiI YATR 4 cut(s) 11, 75, 226, 228
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 6, 27
Fsp4HI GCNGC 2 cut(s) 6, 27
GluI GCNGC 2 cut(s) 6, 27
GsaI CCCAGC 1 cut(s) 33
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 103, 241
Hpy188I TCNGA 2 cut(s) 19, 82
Hpy8I GTNNAC 2 cut(s) 103, 241
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 133, 187
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 113, 184, 203, 263
HpySE526I ACGT 1 cut(s) 243
LpnPI CCDG 2 cut(s) 15, 150
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 230
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 3 cut(s) 95, 206, 284
MfeI CAATTG 1 cut(s) 267
MluCI AATT 3 cut(s) 87, 267, 275
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 3 cut(s) 58, 187, 196
MroXI GAANNNNTTC 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 267
MwoI GCNNNNNNNGC 5 cut(s) 11, 113, 184, 203, 263
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 7, 28
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 29
SatI GCNGC 2 cut(s) 6, 27
SchI GAGTC 1 cut(s) 86
SetI ASST 6 cut(s) 31, 56, 69, 118, 180, 246
SfaNI GCATC 1 cut(s) 230
SgeI CNNG 8 cut(s) 34, 42, 73, 149, 219, 230, 266, 271
Sse9I AATT 3 cut(s) 87, 267, 275
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 87, 267, 275
TscAI CASTG 2 cut(s) 47, 189
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 5, 26
Tsp45I GTSAC 1 cut(s) 56
TspRI CASTG 2 cut(s) 47, 189
XapI RAATTY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.