pycom01g23190

Transcription factor Pcc1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013541
Physical Location & Seq
Reverse (-)
20592124 .. 20593716
1593 bp
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UTR
Exon/CDS
Intron
pycom01g23190.1

Sequence Viewer

Length: 300 bp
ATGGCTGCAGCAGCTTCTGACATGGTAGATGCCCAAACCCAGTGGGAGTTTAGCTGTGACTTGGAGGTAGATTTTGAGTCCGACGAAAGTGCTTCAATCGTCTATGCAACATTAGCTGTTGATAAGGAGTTGCAACCGGACAAGGTGACGAGGCAGATGTCAGTTTCCAACTGCAAGCTTTCAGTGCACTTTGAGGCTGTTGAGGCGAGATTTCTTCGAGCATCATATAGCGCTTTGTTAGATGTATTGACACTCGCCACAAAGACAATCGAAGAATTTGGAAATGGATTAGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pcc1

Protein Analysis

100

Amino Acids

10.91

Weight (kDa)

4.19

Isoelectric Point (pI)

27.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pcc1 PF09341 18 - 91 2.3e-23 Transcription factor Pcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53045
fragaria_vesca FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis pycom01g23190 pycom07g26610
rosa_chinensis RchiOBHm_Chr1g0381471
rosa_roxburghii Rroxscaffold_4G00278640
rosa_rugosa Rorug01G0428700
rosa_samantha Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana Rw1G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 275
AfeI AGCGCT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 96
AluBI AGCT 4 cut(s) 14, 54, 116, 178
AluI AGCT 4 cut(s) 14, 54, 116, 178
Alw21I GWGCWC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 5, 8, 11
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 20, 23
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 19, 230
BmuI ACTGGG 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 20, 23
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstMWI GCNNNNNNNGC 4 cut(s) 11, 113, 184, 203
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 20, 23
BtsIMutI CAGTG 2 cut(s) 47, 189
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 233
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 5, 14, 54, 116, 178, 197
CviKI_1 RGCY 6 cut(s) 5, 14, 54, 116, 178, 197
Eco47III AGCGCT 1 cut(s) 232
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 105, 226, 228
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 6, 9, 12
HaeII RGCGCY 1 cut(s) 234
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 19, 82
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 86
HpyCH4V TGCA 5 cut(s) 8, 107, 133, 174, 187
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 113, 184, 203
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 53, 150
Lsp1109I GCAGC 2 cut(s) 20, 23
LweI GCATC 2 cut(s) 19, 230
MaeIII GTNAC 2 cut(s) 56, 145
MboII GAAGA 2 cut(s) 206, 284
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 275, 293
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 105, 192
MnlI CCTC 4 cut(s) 58, 144, 187, 196
MspI CCGG 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 11, 113, 184, 203
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 56, 145
PkrI GCNGC 3 cut(s) 7, 10, 13
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 17
SatI GCNGC 3 cut(s) 6, 9, 12
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 16, 56, 69, 118, 147, 180
SfaNI GCATC 2 cut(s) 19, 230
SfcI CTRYAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 275, 293
TaqI TCGA 2 cut(s) 217, 270
TasI AATT 2 cut(s) 275, 293
TscAI CASTG 2 cut(s) 47, 189
TseFI GTSAC 2 cut(s) 56, 145
TseI GCWGC 3 cut(s) 5, 8, 11
Tsp45I GTSAC 2 cut(s) 56, 145
TspRI CASTG 2 cut(s) 47, 189
VneI GTGCAC 1 cut(s) 185
XapI RAATTY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.