Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013541

Physical Location & Seq

Genomic Coordinates Reverse (-)

67041291 .. 67043053

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTGCTATGGCTTCTGACAAGGCAGCTGGGCAGACGCAGTGGGAGTTTAGCTGTGACTTGGAGGTAGATTATGAGTCTGAAGAAATTGCTTCTATTGTCTACACGACATTAGCTGTTGATAAGGAGTTGCAACCGGACAAAGTGAAAAGGCAGATGTCAGTTTCCAATGGAAAGCTTTCAGTGCATTTTGAGGCAGTTGAGGCAAGATTTCTTCGAGCATCATATAGTGCTTTTGTGGATGTATTGACACTTGCCACAAAAACAGTTGAAGAATTTGGAAAAGGAATGGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pcc1

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

4.59

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pcc1	PF09341	18 - 91	4.6e-23	Transcription factor Pcc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53045
fragaria_vesca	FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica	MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica	Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis	pycom01g23190 pycom07g26610
rosa_chinensis	RchiOBHm_Chr1g0381471
rosa_roxburghii	Rroxscaffold_4G00278640
rosa_rugosa	Rorug01G0428700
rosa_samantha	Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana	Rw1G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	4 cut(s)	29, 54, 116, 178
AluI	AGCT	4 cut(s)	29, 54, 116, 178
ApeKI	GCWGC	2 cut(s)	5, 26
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	6, 27
BlsI	GCNGC	2 cut(s)	7, 28
BmsI	GCATC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	136
BseGI	GGATG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 184, 203
BstV1I	GCAGC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 189
CseI	GACGC	1 cut(s)	46
CviJI	RGCY	6 cut(s)	5, 14, 29, 54, 116, 178
CviKI_1	RGCY	6 cut(s)	5, 14, 29, 54, 116, 178
Eco57I	CTGAAG	1 cut(s)	102
FaiI	YATR	4 cut(s)	11, 75, 226, 228
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	6, 27
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	6, 27
GluI	GCNGC	2 cut(s)	6, 27
GsaI	CCCAGC	1 cut(s)	33
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	19, 82
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	133, 187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 184, 203
LpnPI	CCDG	2 cut(s)	15, 150
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	3 cut(s)	95, 206, 284
MluCI	AATT	2 cut(s)	87, 275
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	58, 187, 196
MroXI	GAANNNNTTC	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	11, 184, 203
NmuCI	GTSAC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	7, 28
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	29
SatI	GCNGC	2 cut(s)	6, 27
SchI	GAGTC	1 cut(s)	86
SetI	ASST	5 cut(s)	31, 56, 69, 118, 180
SfaNI	GCATC	1 cut(s)	230
SgeI	CNNG	8 cut(s)	34, 42, 73, 118, 149, 219, 230, 266
Sse9I	AATT	2 cut(s)	87, 275
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	87, 275
TscAI	CASTG	2 cut(s)	47, 189
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	5, 26
Tsp45I	GTSAC	1 cut(s)	56
TspRI	CASTG	2 cut(s)	47, 189
XapI	RAATTY	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.