MD01G1222500.v1.1

Transcription factor Pcc1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013541
Physical Location & Seq
Reverse (-)
31475455 .. 31477333
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1222500.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGCTGCAGCAGCTTCTGACATGGCAGATGCCCAAACCCAGTGGGAGTTTAGCTGTGACTTGGAGGTAGATTTTGAGTCCGAGGAAAGTGCTTCAATCGTCTATGCAACATTAGCTGTTGATAAGGAGTTGCAACCAGACAAGGTGAAGAGGCAGATGTCAGTTTCCAACTGCAAGCTTTCAGTGCACTTTGAGGCTGTTGAGGCGAGATTTCTTCGAGCATCATATAGCGCTTTGTTAGATGCATTGACACTCGCCACAAAGACAATCGAAGAATTTGGAAATGGATTAGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pcc1

Protein Analysis

100

Amino Acids

10.9

Weight (kDa)

4.31

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pcc1 PF09341 18 - 91 6.5e-24 Transcription factor Pcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53045
fragaria_vesca FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis pycom01g23190 pycom07g26610
rosa_chinensis RchiOBHm_Chr1g0381471
rosa_roxburghii Rroxscaffold_4G00278640
rosa_rugosa Rorug01G0428700
rosa_samantha Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana Rw1G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 275
AfeI AGCGCT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 96
AluBI AGCT 4 cut(s) 14, 54, 116, 178
AluI AGCT 4 cut(s) 14, 54, 116, 178
Alw21I GWGCWC 1 cut(s) 189
Alw44I GTGCAC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 5, 8, 11
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 20, 23
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 19, 230, 232
BmuI ACTGGG 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 20, 23
BsiHKAI GWGCWC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstMWI GCNNNNNNNGC 4 cut(s) 11, 113, 184, 203
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 20, 23
BtsIMutI CAGTG 2 cut(s) 47, 189
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 233
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 5, 14, 54, 116, 178, 197
CviKI_1 RGCY 6 cut(s) 5, 14, 54, 116, 178, 197
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco47III AGCGCT 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 247
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 105, 226, 228
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 6, 9, 12
HaeII RGCGCY 1 cut(s) 234
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 77
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 19, 82
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 6 cut(s) 8, 107, 133, 174, 187, 245
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 113, 184, 203
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 53, 150
Lsp1109I GCAGC 2 cut(s) 20, 23
LweI GCATC 3 cut(s) 19, 230, 232
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 3 cut(s) 160, 206, 284
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 275, 293
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 58, 76, 144, 187, 196
Mph1103I ATGCAT 1 cut(s) 247
MwoI GCNNNNNNNGC 4 cut(s) 11, 113, 184, 203
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 247
PkrI GCNGC 3 cut(s) 7, 10, 13
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 17
SatI GCNGC 3 cut(s) 6, 9, 12
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 16, 56, 69, 118, 147, 180
SfaNI GCATC 3 cut(s) 19, 230, 232
SfcI CTRYAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 275, 293
TaqI TCGA 2 cut(s) 217, 270
TasI AATT 2 cut(s) 275, 293
TscAI CASTG 2 cut(s) 47, 189
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 5, 8, 11
Tsp45I GTSAC 1 cut(s) 56
TspRI CASTG 2 cut(s) 47, 189
VneI GTGCAC 1 cut(s) 185
XapI RAATTY 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.