MD07G1293100.v1.1

Transcription factor Pcc1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013541
Physical Location & Seq
Reverse (-)
35470065 .. 35471937
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1293100.v1.1.491

Sequence Viewer

Length: 306 bp
ATGGCTGCAGCAGCTTCTGACATGACAATGGCAGATGCCCAAACCCAGTGGGAGTTTAGCTGTGACTTGGAGGTAGATTTTGAGTCCGAGGAAAGTGCTTCCATTGTCTATGCAACATTAGCTGTTGATAAGGAGTTGCAACCAGACAAGGTGAAAAGGCAGATGTCAGTTTCCAACTGCAAGCTTTCCGTGCACTTTGAGGCTGTTGAGGCGAGATTTCTTCGAGCATCATACAGCGCTTTGTTAGATGCGTTGACACTCGCCACGAAAACAATTGAAGAATTTGGAAATGGATTGGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pcc1

Protein Analysis

102

Amino Acids

11.13

Weight (kDa)

4.31

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pcc1 PF09341 20 - 93 6.9e-24 Transcription factor Pcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53045
fragaria_vesca FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis pycom01g23190 pycom07g26610
rosa_chinensis RchiOBHm_Chr1g0381471
rosa_roxburghii Rroxscaffold_4G00278640
rosa_rugosa Rorug01G0428700
rosa_samantha Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana Rw1G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 281
AfeI AGCGCT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 278
AluBI AGCT 4 cut(s) 14, 60, 122, 184
AluI AGCT 4 cut(s) 14, 60, 122, 184
Alw21I GWGCWC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 17
Aor51HI AGCGCT 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 3 cut(s) 5, 8, 11
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 20, 23
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 3 cut(s) 25, 236, 238
BmuI ACTGGG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 20, 23
BsiHKAI GWGCWC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstMWI GCNNNNNNNGC 4 cut(s) 11, 119, 190, 209
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 20, 23
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 5, 14, 60, 122, 184, 203
CviKI_1 RGCY 6 cut(s) 5, 14, 60, 122, 184, 203
Eco47III AGCGCT 1 cut(s) 238
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 111, 232
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
GlaI GCGC 1 cut(s) 238
GluI GCNGC 3 cut(s) 6, 9, 12
HaeII RGCGCY 1 cut(s) 240
HhaI GCGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 83
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 193, 255
Hpy188I TCNGA 2 cut(s) 19, 88
Hpy8I GTNNAC 2 cut(s) 193, 255
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 5 cut(s) 8, 113, 139, 180, 193
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 119, 190, 209
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 237
LpnPI CCDG 2 cut(s) 59, 156
Lsp1109I GCAGC 2 cut(s) 20, 23
LweI GCATC 3 cut(s) 25, 236, 238
MaeIII GTNAC 1 cut(s) 62
MboII GAAGA 2 cut(s) 212, 290
MfeI CAATTG 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 273, 281
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 64, 82, 193, 202
MslI CAYNNNNRTG 1 cut(s) 26
MunI CAATTG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 11, 119, 190, 209
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 7, 10, 13
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 3 cut(s) 6, 9, 12
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 195
SetI ASST 6 cut(s) 16, 62, 75, 124, 153, 186
SfaNI GCATC 3 cut(s) 25, 236, 238
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 273, 281
TaaI ACNGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 223
TasI AATT 2 cut(s) 273, 281
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 3 cut(s) 5, 8, 11
Tsp45I GTSAC 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 53
VneI GTGCAC 1 cut(s) 191
XapI RAATTY 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.