FvH4_7g31970

Transcription factor Pcc1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013541
Physical Location & Seq
Reverse (-)
23067086 .. 23068786
1701 bp
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UTR
Exon/CDS
Intron
FvH4_7g31970.t3

Sequence Viewer

Length: 300 bp
ATGGCTGCTATGGCTTCTGACAAGGCAGATGGGCAGACCCAGTGGGAGTTTAGCTGTGACATGGAGGTAGATTATGAGTCTGAAGAAATTGCTTCTATTGTCTATAATACATTAGCTGTTGATAAGGAGTTGCAACCAGACAAGGTAAAAAGGCAGATGTCAGTATCCAATGGAAAGCTTTCAGTGCATTTTGAGGCAGTTGAGGCAAGATTTCTTCGAGCATCATATAGTGCTTTTGTGGATGTATTGACACTTGCCACGAAAACAATTGAAGAGTTTGGAAAAGGAATGGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pcc1

Protein Analysis

100

Amino Acids

11.08

Weight (kDa)

4.51

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pcc1 PF09341 37 - 107 1e-22 Transcription factor Pcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53045
fragaria_vesca FvH4_7g31970 FvH4_7g31970 FvH4_7g31970
malus_domestica MD01G1222500.v1.1 MD07G1293100.v1.1
prunus_persica Prupe.2G312900_v2.0.a1 Prupe.2G312900_v2.0.a1
pyrus_communis pycom01g23190 pycom07g26610
rosa_chinensis RchiOBHm_Chr1g0381471
rosa_roxburghii Rroxscaffold_4G00278640
rosa_rugosa Rorug01G0428700
rosa_samantha Rh1AG452000 Rh1BG409200 Rh1CG423700 Rh1DG440500
rosa_wichuraiana Rw1G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 3 cut(s) 54, 116, 178
AluI AGCT 3 cut(s) 54, 116, 178
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 178
BccI CCATC 1 cut(s) 23
BciVI GTATCC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 230
BmuI ACTGGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 267
BstF5I GGATG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 11, 184, 203
BsuI GTATCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 47, 189
CviAII CATG 1 cut(s) 61
CviJI RGCY 5 cut(s) 5, 14, 54, 116, 178
CviKI_1 RGCY 5 cut(s) 5, 14, 54, 116, 178
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 102
FaeI CATG 1 cut(s) 64
FaiI YATR 6 cut(s) 11, 62, 75, 105, 226, 228
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 19, 82
HpyCH4V TGCA 2 cut(s) 133, 187
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 184, 203
Hsp92II CATG 1 cut(s) 64
LpnPI CCDG 2 cut(s) 53, 150
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 3 cut(s) 95, 206, 284
MfeI CAATTG 1 cut(s) 267
MluCI AATT 3 cut(s) 87, 267, 293
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 3 cut(s) 58, 187, 196
MroXI GAANNNNTTC 1 cut(s) 178
MunI CAATTG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 11, 184, 203
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
SatI GCNGC 1 cut(s) 6
SchI GAGTC 1 cut(s) 86
SetI ASST 5 cut(s) 56, 69, 118, 147, 180
SfaNI GCATC 1 cut(s) 230
SgeI CNNG 9 cut(s) 34, 52, 73, 149, 154, 219, 230, 266, 271
Sse9I AATT 3 cut(s) 87, 267, 293
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 87, 267, 293
TscAI CASTG 2 cut(s) 47, 189
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 56
TspRI CASTG 2 cut(s) 47, 189
XmnI GAANNNNTTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.