Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006375

Physical Location & Seq

Genomic Coordinates Reverse (-)

21510095 .. 21513620

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATGCCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCATAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGGATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCGAGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTGAGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGAAGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAATGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAATGCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGACCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAGAATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTACACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCATTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAACAGAAGAGGTACTTCTGTTAATAAAGCTCTGCTCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

312

Amino Acids

34.34

Weight (kDa)

6.49

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	76 - 299	4.5e-22	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	77 - 305	3.7e-10	Alpha/beta hydrolase family
Hydrolase_4	PF12146	77 - 153	7.7e-10	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53050 AT5G53050 AT5G53050 AT5G53050 AT5G53050 AT5G53050
fragaria_vesca	FvH4_7g31980 FvH4_7g31980 FvH4_7g31980 FvH4_7g31980 FvH4_7g31980
malus_domestica	MD01G1222600.v1.1 MD07G1293200.v1.1
prunus_persica	Prupe.2G313000_v2.0.a1 Prupe.2G313000_v2.0.a1
pyrus_communis	pycom01g23200
rosa_chinensis	RchiOBHm_Chr1g0381481
rosa_laevigata	RLG00000026229
rosa_multiflora	Rmu_sc0006872.1_g000026
rosa_roxburghii	Rroxscaffold_4G00278630
rosa_rugosa	Rorug01G0428800 Rorug01G0428900
rosa_samantha	Rh1AG452100 Rh1BG409300 Rh1CG423800 Rh1DG440600
rosa_wichuraiana	Rw1G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	753
AciI	CCGC	2 cut(s)	60, 751
AclWI	GGATC	2 cut(s)	351, 870
AcoI	YGGCCR	1 cut(s)	694
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	4 cut(s)	86, 302, 683, 909
AfiI	CCNNNNNNNGG	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	330, 476, 582, 743
AluBI	AGCT	8 cut(s)	107, 276, 365, 401, 413, 490, 557, 925
AluI	AGCT	8 cut(s)	107, 276, 365, 401, 413, 490, 557, 925
Alw26I	GTCTC	2 cut(s)	35, 775
AlwI	GGATC	2 cut(s)	351, 870
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	931
AoxI	GGCC	2 cut(s)	34, 694
ApeKI	GCWGC	2 cut(s)	413, 554
Asp700I	GAANNNNTTC	2 cut(s)	217, 432
AspLEI	GCGC	2 cut(s)	248, 424
AspS9I	GGNCC	3 cut(s)	35, 95, 149
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	2 cut(s)	95, 149
BaeI	ACNNNNGTAYC	2 cut(s)	899, 932
BalI	TGGCCA	1 cut(s)	696
BanI	GGYRCC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	890
BbsI	GAAGAC	2 cut(s)	793, 829
BbvI	GCAGC	2 cut(s)	400, 566
BccI	CCATC	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	35, 775
BfaI	CTAG	2 cut(s)	593, 852
BfmI	CTRYAG	2 cut(s)	76, 603
BfoI	RGCGCY	1 cut(s)	425
BisI	GCNGC	3 cut(s)	60, 414, 555
BlsI	GCNGC	3 cut(s)	61, 415, 556
Bme18I	GGWCC	2 cut(s)	95, 149
BmeT110I	CYCGRG	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	35, 95, 149
BmiI	GGNNCC	3 cut(s)	133, 150, 423
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	2 cut(s)	793, 829
Bpu10I	CCTNAGC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	684
Bse1I	ACTGG	3 cut(s)	670, 831, 845
Bse3DI	GCAATG	3 cut(s)	399, 423, 510
BseLI	CCNNNNNNNGG	1 cut(s)	684
BseMI	GCAATG	3 cut(s)	399, 423, 510
BseMII	CTCAG	3 cut(s)	288, 786, 818
BseNI	ACTGG	3 cut(s)	670, 831, 845
BseXI	GCAGC	2 cut(s)	400, 566
BshFI	GGCC	2 cut(s)	36, 696
BshNI	GGYRCC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	931
BsiSI	CCGG	3 cut(s)	129, 231, 496
BsiWI	CGTACG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	684
BsmAI	GTCTC	2 cut(s)	35, 775
BsmBI	CGTCTC	1 cut(s)	35
BsmI	GAATGC	2 cut(s)	482, 675
BsnI	GGCC	2 cut(s)	36, 696
BsoBI	CYCGRG	1 cut(s)	931
Bsp143I	GATC	2 cut(s)	343, 862
BspACI	CCGC	2 cut(s)	60, 751
BspANI	GGCC	2 cut(s)	36, 696
BspCNI	CTCAG	3 cut(s)	289, 785, 817
BspLI	GGNNCC	3 cut(s)	133, 150, 423
BspPI	GGATC	2 cut(s)	351, 870
BspQI	GCTCTTC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	753
BsrDI	GCAATG	3 cut(s)	399, 423, 510
BsrI	ACTGG	3 cut(s)	670, 831, 845
BssMI	GATC	2 cut(s)	343, 862
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	1 cut(s)	890
Bst2BI	CACGAG	1 cut(s)	890
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	2 cut(s)	114, 897
BstACI	GRCGYC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	297, 486, 772, 804
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	2 cut(s)	248, 424
BstKTI	GATC	2 cut(s)	346, 865
BstMAI	GTCTC	2 cut(s)	35, 775
BstMBI	GATC	2 cut(s)	343, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 419
BstSFI	CTRYAG	2 cut(s)	76, 603
BstV1I	GCAGC	2 cut(s)	400, 566
BstV2I	GAAGAC	2 cut(s)	793, 829
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	2 cut(s)	36, 696
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	2 cut(s)	248, 424
Cfr13I	GGNCC	3 cut(s)	35, 95, 149
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	85, 301, 682, 908
CviAII	CATG	7 cut(s)	92, 137, 144, 160, 782, 791, 869
CviQI	GTAC	4 cut(s)	85, 301, 682, 908
DdeI	CTNAG	4 cut(s)	297, 486, 772, 804
DinI	GGCGCC	1 cut(s)	423
DpnI	GATC	2 cut(s)	345, 864
DpnII	GATC	2 cut(s)	343, 862
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	2 cut(s)	114, 897
EarI	CTCTTC	2 cut(s)	114, 897
Eco47I	GGWCC	2 cut(s)	95, 149
Eco88I	CYCGRG	1 cut(s)	931
EcoO109I	RGGNCCY	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	7 cut(s)	95, 140, 147, 163, 785, 794, 872
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FatI	CATG	7 cut(s)	91, 136, 143, 159, 781, 790, 868
Fnu4HI	GCNGC	3 cut(s)	60, 414, 555
Fsp4HI	GCNGC	3 cut(s)	60, 414, 555
FspBI	CTAG	2 cut(s)	593, 852
GlaI	GCGC	2 cut(s)	247, 423
GluI	GCNGC	3 cut(s)	60, 414, 555
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	36, 696
HapII	CCGG	3 cut(s)	129, 231, 496
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	248, 424
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	7 cut(s)	95, 140, 147, 163, 785, 794, 872
Hin6I	GCGC	2 cut(s)	246, 422
HinP1I	GCGC	2 cut(s)	246, 422
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	140, 227, 326, 599
HpaII	CCGG	3 cut(s)	129, 231, 496
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	5 cut(s)	223, 298, 528, 661, 807
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	4 cut(s)	49, 194, 206, 209
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	83, 520
HpyCH4V	TGCA	3 cut(s)	405, 416, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 419
HpyF3I	CTNAG	4 cut(s)	297, 486, 772, 804
HpySE526I	ACGT	2 cut(s)	83, 520
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	7 cut(s)	95, 140, 147, 163, 785, 794, 872
HspAI	GCGC	2 cut(s)	246, 422
KasI	GGCGCC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	343, 862
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	400, 566
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	593, 852
MaeII	ACGT	2 cut(s)	83, 520
MaeIII	GTNAC	3 cut(s)	457, 714, 812
MalI	GATC	2 cut(s)	345, 864
MbiI	CCGCTC	1 cut(s)	753
MboI	GATC	2 cut(s)	343, 862
MboII	GAAGA	9 cut(s)	38, 64, 101, 370, 608, 798, 834, 857, 914
MflI	RGATCY	1 cut(s)	862
MlsI	TGGCCA	1 cut(s)	696
MluCI	AATT	5 cut(s)	213, 330, 372, 627, 699
MluNI	TGGCCA	1 cut(s)	696
Mly113I	GGCGCC	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	321, 335
MnlI	CCTC	8 cut(s)	7, 162, 203, 232, 461, 828, 866, 898
Mox20I	TGGCCA	1 cut(s)	696
MroXI	GAANNNNTTC	2 cut(s)	217, 432
MscI	TGGCCA	1 cut(s)	696
MseI	TTAA	5 cut(s)	51, 453, 702, 917, 937
Msp20I	TGGCCA	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	129, 231, 496
Mva1269I	GAATGC	2 cut(s)	482, 675
MwoI	GCNNNNNNNGC	2 cut(s)	398, 419
NarI	GGCGCC	1 cut(s)	422
NdeII	GATC	2 cut(s)	343, 862
NlaIII	CATG	7 cut(s)	95, 140, 147, 163, 785, 794, 872
NlaIV	GGNNCC	3 cut(s)	133, 150, 423
NmeAIII	GCCGAG	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	931
PciSI	GCTCTTC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	2 cut(s)	482, 675
PdmI	GAANNNNTTC	2 cut(s)	217, 432
PfeI	GAWTC	3 cut(s)	227, 326, 599
Pfl23II	CGTACG	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	61, 415, 556
PleI	GAGTC	1 cut(s)	148
PluTI	GGCGCC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
PspLI	CGTACG	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	133, 150, 423
PspPI	GGNCC	3 cut(s)	35, 95, 149
PspPPI	RGGWCCY	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	4 cut(s)	86, 302, 683, 909
RsaNI	GTAC	4 cut(s)	85, 301, 682, 908
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	5 cut(s)	51, 453, 702, 917, 937
SatI	GCNGC	3 cut(s)	60, 414, 555
Sau3AI	GATC	2 cut(s)	343, 862
Sau96I	GGNCC	3 cut(s)	35, 95, 149
SchI	GAGTC	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	76, 603
SfoI	GGCGCC	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	931
SinI	GGWCC	2 cut(s)	95, 149
SlaI	CTCGAG	1 cut(s)	931
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
Sse9I	AATT	5 cut(s)	213, 330, 372, 627, 699
SsiI	CCGC	2 cut(s)	60, 751
SspDI	GGCGCC	1 cut(s)	421
SspMI	CTAG	2 cut(s)	593, 852
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	86, 523
TaqI	TCGA	4 cut(s)	237, 252, 271, 932
TasI	AATT	5 cut(s)	213, 330, 372, 627, 699
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	227, 326, 599
Tru1I	TTAA	5 cut(s)	51, 453, 702, 917, 937
Tru9I	TTAA	5 cut(s)	51, 453, 702, 917, 937
TseI	GCWGC	2 cut(s)	413, 554
TspDTI	ATGAA	2 cut(s)	770, 857
TspGWI	ACGGA	2 cut(s)	191, 222
VpaK11BI	GGWCC	2 cut(s)	95, 149
XhoI	CTCGAG	1 cut(s)	931
XmnI	GAANNNNTTC	2 cut(s)	217, 432
XspI	CTAG	2 cut(s)	593, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.