Rmu_sc0006872.1_g000026

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006872.1
Physical Location & Seq
Reverse (-)
160365 .. 166511
6147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006872.1_g000026.1.cds

Sequence Viewer

Length: 1389 bp
atgccgttttgcgaagtcgcgtcgccgcggaatgccgccgcagtcgacgccaagctcaacgacgccggaaccaaaatttactaccggacttatggccgcgggcccaccaaggtcctcctgatcatcggattggcgggaactcacgattcgtgggggccacagatacaggggctgacggggacggtgacggcgaacgacgatgatagggcggcggaggagtgtggcgacaatgaggctggttttagcggcggagggatcgaggtgtgtgcgtttgataatcggggcatgggtcggagctccgtgccggtgaaaaagtcagaatatacaacaagaacaatggcgaaggatgcaattgctttgatggatcatttggggtggaaacaagcgcatgttttcgggcattcaatgggagctatgatagcttgcaagttagcagcgatggtgcccgacagagttttgtcattggctctgctcaatgtgaccggaggaggtttcgagtgtttaccaaggctcgaccgccaaacgttatctattgctatccgatttttaaaggcaaagacgcctgagcaaagagcagctgttgacttggacacacactattcaaaggggtatcttgaggaatatgttggatccaacacaagaagggcaattttataccaagaatatgtaaaaggtatatcagcaactgggatgcagtctaaccatggttttgaaggtcaactgaatgcatgctggacacataaaatgacaccaactgaaattgaaaagatccgctctggtggatttcttgtttcagtcattcatggcaggcatgatgtcatcgctcaaatatattatgcaaagagactggcgcagaagctgcagcctgttgctagaatggttgatcttcctggagggcatctcgtgagtcatgagaggactgaagaggtcaataatgctcttaatgagttgatcaaagcttcggaagctaagacagagccacatgattggacaaatttgcctgagaaaagttcggggtgggtggttacaaggatgttggttgtcaaaaaaagtaatggtgaggttaatagtgcatctttggcatccagaatggctgctatggcttctgacaaggcagctgggcagacgcagtgggagtttagctgtgacttggaggtagattatgagtctgaagaaattgcttctattgtctacacgacattagctgttgataaggagttgcaaccggacaaagtgaaaaggcagatgtcagtttccaatggaaagctttcagtgcattttgaggcagttgaggcaagatttcttcgagcatcatatagtgcttttgtggatgtattgacacttgccacaaaaacagttgaagaatttggaaaaggaatggagttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

50.55

Weight (kDa)

6.38

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 774
AccI GTMKAC 2 cut(s) 45, 1191
AccII CGCG 3 cut(s) 20, 28, 99
AclI AACGTT 1 cut(s) 524
AclWI GGATC 5 cut(s) 263, 372, 624, 637, 763
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 3 cut(s) 75, 994, 1364
AcuI CTGAAG 2 cut(s) 942, 1191
AcyI GRCGYC 3 cut(s) 48, 63, 560
AgsI TTSAA 5 cut(s) 405, 603, 713, 764, 1361
AjnI CCWGG 1 cut(s) 889
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 838
AlwI GGATC 5 cut(s) 263, 372, 624, 637, 763
AlwNI CAGNNNCTG 3 cut(s) 172, 686, 859
AoxI GGCC 3 cut(s) 94, 101, 155
ApaI GGGCCC 1 cut(s) 105
ApeKI GCWGC 6 cut(s) 434, 575, 859, 862, 1094, 1115
ApoI RAATTY 3 cut(s) 75, 994, 1364
Asp700I GAANNNNTTC 1 cut(s) 1267
AspLEI GCGC 2 cut(s) 388, 853
AspS9I GGNCC 4 cut(s) 101, 102, 112, 155
AsuHPI GGTGA 3 cut(s) 196, 319, 1070
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 2 cut(s) 105, 447
BamHI GGATCC 1 cut(s) 629
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 2 cut(s) 105, 299
BauI CACGAG 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 6 cut(s) 446, 587, 846, 874, 1081, 1127
BccI CCATC 2 cut(s) 355, 433
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 891
BclI TGATCA 2 cut(s) 120, 951
BcoDI GTCTC 1 cut(s) 838
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 1 cut(s) 860
Bme1390I CCNGG 1 cut(s) 891
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 101, 102, 112, 155
BmiI GGNNCC 5 cut(s) 70, 103, 156, 444, 631
BmrFI CCNGG 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 6 cut(s) 337, 681, 907, 1082, 1091, 1319
BmuI ACTGGG 1 cut(s) 696
BplI GAGNNNNNCTC 2 cut(s) 885, 917
BpmI CTGGAG 1 cut(s) 912
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 635
BsaHI GRCGYC 3 cut(s) 48, 63, 560
BsaJI CCNNGG 5 cut(s) 26, 97, 108, 506, 703
BsaWI WCCGGW 3 cut(s) 84, 482, 1225
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 691, 852
BseBI CCWGG 1 cut(s) 891
BseDI CCNNGG 5 cut(s) 26, 97, 108, 506, 703
BseGI GGATG 5 cut(s) 352, 696, 1038, 1082, 1336
BseMII CTCAG 2 cut(s) 555, 993
BseNI ACTGG 2 cut(s) 691, 852
BseRI GAGGAG 2 cut(s) 230, 501
BseSI GKGCMC 2 cut(s) 105, 447
BseXI GCAGC 6 cut(s) 446, 587, 846, 874, 1081, 1127
BseYI CCCAGC 1 cut(s) 1118
Bsh1236I CGCG 3 cut(s) 20, 28, 99
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 3 cut(s) 96, 103, 157
BshNI GGYRCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 5 cut(s) 66, 85, 305, 483, 1226
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 838
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 3 cut(s) 37, 400, 730
BsnI GGCC 3 cut(s) 96, 103, 157
Bsp120I GGGCCC 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 105, 299, 447
Bsp143I GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
Bsp19I CCATGG 1 cut(s) 703
BspANI GGCC 3 cut(s) 96, 103, 157
BspCNI CTCAG 2 cut(s) 556, 994
BspFNI CGCG 3 cut(s) 20, 28, 99
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 5 cut(s) 70, 103, 156, 444, 631
BspMAI CTGCAG 1 cut(s) 864
BspPI GGATC 5 cut(s) 263, 372, 624, 637, 763
BspT107I GGYRCC 1 cut(s) 442
BsrBI CCGCTC 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 2 cut(s) 691, 852
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 5 cut(s) 26, 97, 108, 506, 703
BssMI GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
BssNI GRCGYC 3 cut(s) 48, 63, 560
BssSI CACGAG 1 cut(s) 902
BssT1I CCWWGG 3 cut(s) 108, 506, 703
Bst2BI CACGAG 1 cut(s) 902
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 2 cut(s) 184, 1357
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 3 cut(s) 48, 63, 560
BstAPI GCANNNNNTGC 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 101, 424, 730, 809
BstDEI CTNAG 3 cut(s) 564, 969, 1002
BstDSI CCRYGG 3 cut(s) 26, 97, 703
BstF5I GGATG 5 cut(s) 352, 696, 1038, 1082, 1336
BstFNI CGCG 3 cut(s) 20, 28, 99
BstHHI GCGC 2 cut(s) 388, 853
BstKTI GATC 7 cut(s) 123, 258, 367, 632, 771, 886, 954
BstMAI GTCTC 1 cut(s) 838
BstMBI GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 9 cut(s) 47, 347, 419, 859, 965, 1079, 1100, 1273, 1292
BstNI CCWGG 1 cut(s) 891
BstNSI RCATGY 2 cut(s) 392, 732
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 1 cut(s) 860
BstSLI GKGCMC 2 cut(s) 105, 447
BstUI CGCG 3 cut(s) 20, 28, 99
BstV1I GCAGC 6 cut(s) 446, 587, 846, 874, 1081, 1127
BstX2I RGATCY 2 cut(s) 629, 768
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 2 cut(s) 629, 768
BsuRI GGCC 3 cut(s) 96, 103, 157
BtgI CCRYGG 3 cut(s) 26, 97, 703
BtgZI GCGATG 2 cut(s) 452, 805
BtsCI GGATG 5 cut(s) 352, 696, 1038, 1082, 1336
BtsI GCAGTG 1 cut(s) 1136
BtsIMutI CAGTG 2 cut(s) 1136, 1278
Cac8I GCNNGC 4 cut(s) 101, 424, 730, 809
CaiI CAGNNNCTG 3 cut(s) 172, 686, 859
CciI TCATGA 1 cut(s) 910
CfoI GCGC 2 cut(s) 388, 853
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 4 cut(s) 101, 102, 112, 155
Cfr42I CCGCGG 2 cut(s) 29, 100
CseI GACGC 5 cut(s) 9, 56, 71, 568, 1135
CviAII CATG 8 cut(s) 286, 389, 704, 729, 803, 812, 911, 983
DdeI CTNAG 3 cut(s) 564, 969, 1002
DpnI GATC 7 cut(s) 122, 257, 366, 631, 770, 885, 953
DpnII GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
DraI TTTAAA 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
EciI GGCGGA 2 cut(s) 227, 264
Ecl136II GAGCTC 1 cut(s) 297
Eco130I CCWWGG 3 cut(s) 108, 506, 703
Eco24I GRGCYC 2 cut(s) 105, 299
Eco47I GGWCC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 942, 1191
EcoICRI GAGCTC 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 889
EcoT14I CCWWGG 3 cut(s) 108, 506, 703
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 2 cut(s) 105, 299
ErhI CCWWGG 3 cut(s) 108, 506, 703
FaeI CATG 8 cut(s) 289, 392, 707, 732, 806, 815, 914, 986
FaqI GGGAC 1 cut(s) 193
FatI CATG 8 cut(s) 285, 388, 703, 728, 802, 811, 910, 982
FauI CCCGC 2 cut(s) 92, 127
FbaI TGATCA 2 cut(s) 120, 951
FblI GTMKAC 2 cut(s) 45, 1191
FokI GGATG 5 cut(s) 359, 703, 1045, 1069, 1343
FriOI GRGCYC 2 cut(s) 105, 299
FspBI CTAG 1 cut(s) 873
GlaI GCGC 2 cut(s) 387, 852
GsaI CCCAGC 1 cut(s) 1122
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 3 cut(s) 96, 103, 157
HapII CCGG 5 cut(s) 66, 85, 305, 483, 1226
HgaI GACGC 5 cut(s) 9, 56, 71, 568, 1135
HhaI GCGC 2 cut(s) 388, 853
Hin1I GRCGYC 3 cut(s) 48, 63, 560
Hin1II CATG 8 cut(s) 289, 392, 707, 732, 806, 815, 914, 986
Hin6I GCGC 2 cut(s) 386, 851
HinP1I GCGC 2 cut(s) 386, 851
HincII GTYRAC 3 cut(s) 46, 583, 719
HindII GTYRAC 3 cut(s) 46, 583, 719
HindIII AAGCTT 2 cut(s) 957, 1265
HinfI GANTC 3 cut(s) 146, 907, 1166
HpaII CCGG 5 cut(s) 66, 85, 305, 483, 1226
HphI GGTGA 3 cut(s) 196, 319, 1070
Hpy166II GTNNAC 5 cut(s) 46, 503, 583, 719, 1192
Hpy188I TCNGA 7 cut(s) 128, 294, 319, 542, 964, 1108, 1171
Hpy188III TCNNGA 6 cut(s) 118, 143, 614, 904, 911, 1086
Hpy8I GTNNAC 5 cut(s) 46, 503, 583, 719, 1192
Hpy99I CGWCG 4 cut(s) 25, 50, 65, 200
HpyAV CCTTC 3 cut(s) 337, 636, 707
HpyCH4III ACNGT 2 cut(s) 184, 1357
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 9 cut(s) 350, 426, 694, 728, 839, 862, 1073, 1222, 1276
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 347, 419, 859, 965, 1079, 1100, 1273, 1292
HpyF3I CTNAG 3 cut(s) 564, 969, 1002
HpySE526I ACGT 1 cut(s) 524
Hsp92I GRCGYC 3 cut(s) 48, 63, 560
Hsp92II CATG 8 cut(s) 289, 392, 707, 732, 806, 815, 914, 986
HspAI GCGC 2 cut(s) 386, 851
Ksp22I TGATCA 2 cut(s) 120, 951
KspI CCGCGG 2 cut(s) 29, 100
Kzo9I GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
LmnI GCTCC 3 cut(s) 294, 302, 410
Lsp1109I GCAGC 6 cut(s) 446, 587, 846, 874, 1081, 1127
LweI GCATC 6 cut(s) 337, 681, 907, 1082, 1091, 1319
MaeI CTAG 1 cut(s) 873
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 4 cut(s) 184, 478, 1024, 1145
MalI GATC 7 cut(s) 122, 257, 366, 631, 770, 885, 953
MbiI CCGCTC 1 cut(s) 774
MboI GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
MboII GAAGA 5 cut(s) 878, 935, 1184, 1295, 1373
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 2 cut(s) 629, 768
MhlI GDGCHC 3 cut(s) 105, 299, 447
MluCI AATT 7 cut(s) 75, 351, 648, 759, 994, 1176, 1364
MlyI GAGTC 2 cut(s) 916, 1175
MmeI TCCRAC 3 cut(s) 272, 607, 657
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 1267
MseI TTAA 3 cut(s) 548, 942, 1065
MspA1I CMGCKG 4 cut(s) 28, 99, 578, 1118
MspI CCGG 5 cut(s) 66, 85, 305, 483, 1226
MspR9I CCNGG 1 cut(s) 891
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 3 cut(s) 37, 400, 730
MvaI CCWGG 1 cut(s) 891
MvnI CGCG 3 cut(s) 20, 28, 99
MwoI GCNNNNNNNGC 9 cut(s) 47, 347, 419, 859, 965, 1079, 1100, 1273, 1292
NcoI CCATGG 1 cut(s) 703
NdeII GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
NlaIII CATG 8 cut(s) 289, 392, 707, 732, 806, 815, 914, 986
NlaIV GGNNCC 5 cut(s) 70, 103, 156, 444, 631
NmuCI GTSAC 3 cut(s) 184, 478, 1145
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 2 cut(s) 392, 732
PaeI GCATGC 1 cut(s) 732
PagI TCATGA 1 cut(s) 910
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 3 cut(s) 37, 400, 730
PdmI GAANNNNTTC 1 cut(s) 1267
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 889
PleI GAGTC 2 cut(s) 915, 1174
PpsI GAGTC 2 cut(s) 915, 1174
PpuMI RGGWCCY 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 299
Psp1406I AACGTT 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 889
PspFI CCCAGC 1 cut(s) 1118
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 5 cut(s) 70, 103, 156, 444, 631
PspOMI GGGCCC 1 cut(s) 101
PspPI GGNCC 4 cut(s) 101, 102, 112, 155
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 864
PstNI CAGNNNCTG 3 cut(s) 172, 686, 859
PsuI RGATCY 2 cut(s) 629, 768
PvuII CAGCTG 2 cut(s) 578, 1118
SacI GAGCTC 1 cut(s) 299
SacII CCGCGG 2 cut(s) 29, 100
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 548, 942, 1065
Sau3AI GATC 7 cut(s) 120, 255, 364, 629, 768, 883, 951
Sau96I GGNCC 4 cut(s) 101, 102, 112, 155
SchI GAGTC 2 cut(s) 916, 1175
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 3 cut(s) 105, 299, 447
SfaNI GCATC 6 cut(s) 337, 681, 907, 1082, 1091, 1319
SfcI CTRYAG 1 cut(s) 860
Sfr303I CCGCGG 2 cut(s) 29, 100
SgrBI CCGCGG 2 cut(s) 29, 100
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SphI GCATGC 1 cut(s) 732
Sse9I AATT 7 cut(s) 75, 351, 648, 759, 994, 1176, 1364
SspMI CTAG 1 cut(s) 873
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 889
StyI CCWWGG 3 cut(s) 108, 506, 703
TaaI ACNGT 2 cut(s) 184, 1357
TaiI ACGT 1 cut(s) 527
TaqI TCGA 5 cut(s) 45, 258, 495, 513, 1306
TasI AATT 7 cut(s) 75, 351, 648, 759, 994, 1176, 1364
TauI GCSGC 6 cut(s) 28, 38, 41, 99, 212, 249
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 548, 942, 1065
Tru9I TTAA 3 cut(s) 548, 942, 1065
TscAI CASTG 2 cut(s) 1136, 1278
TseFI GTSAC 3 cut(s) 184, 478, 1145
TseI GCWGC 6 cut(s) 434, 575, 859, 862, 1094, 1115
Tsp45I GTSAC 3 cut(s) 184, 478, 1145
TspDTI ATGAA 1 cut(s) 791
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 2 cut(s) 1136, 1278
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 3 cut(s) 75, 994, 1364
XceI RCATGY 2 cut(s) 392, 732
XmiI GTMKAC 2 cut(s) 45, 1191
XmnI GAANNNNTTC 1 cut(s) 1267
XspI CTAG 1 cut(s) 873
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.