Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006375

Physical Location & Seq

Genomic Coordinates Reverse (-)

53191766 .. 53195974

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCCGTTTTGCGAAGTCGCGTCGCCGCGGAATGCCGCCGCAGTCGACGCCAAGCTCAACGACGCCGGAACCAAAATTTACTACCGGACTTACGGCCGCGGGCCCACCAAGGTCCTCCTGATCATCGGATTGGCGGGAACTCACGATTCGTGGGGGCCACAGATACAGGGGCTGACGGGGACGGTGACGGCGAACGACGATGATAGGGCGGCGGAGGAGTGTGGCGACAATGAGGCTGGTTTTAGCGGCGGAGGGATCGAGGTGTGTGCGTTTGATAATCGGGGCATGGGTCGGAGCTCCGTGCCGGTGAAAAAGTCAGAATATACAACAAGAACAATGGCGAAGGATGCAATTGCTTTGATGGATCATTTGGGGTGGAAACAAGCGCATGTTTTCGGGCATTCAATGGGAGCTATGATAGCTTGCAAGTTAGTAGCGATGGTGCCCGACAGAATTTTGTCATTGGCTCTGCTCAATGTGACCGGAGGAGGTTTCGAGTGTTTACCAAGGCTCGACCGCCAAACGTTATCTATTGCCATCCGTTTTTTGAAGGCAAAGACGCCTGAGCAAAGAGCAGCTGTTGACTTGGACACGCACTATTCAAAGGGGTATCTTGAGGAATATGTTGGATCCAACACAAGAAGGGCAATTTTATACCAAGAATATGTAAAAGGTATATCAGCAACTGGGATGCAGTCTAACCATGGTTTTGAAGGTCAACTGAATGCGTGCTGGACACATAAAATGACACCAACTGAAATTGAAAAGATCCGCTCTGCTGGATTTCTTGTTTCAGTCATTCATGGCAGGCATGATGTCATCGCTCAAATATATTATGCAAAGAGACTGGCGCAGAAGCTGCAGCCTGTTGCTAGAATGGTTGATCTTCCTGGAGGGCATCTCGTGAGTCATGAGAGGACTGAAGAGGTATACCTTCATATTTGTATCACACTGATTGTATATCTAATATCCATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

326

Amino Acids

35.73

Weight (kDa)

8.11

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	38 - 306	1.3e-22	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 310	2.8e-11	Alpha/beta hydrolase family
Hydrolase_4	PF12146	82 - 159	3.8e-10	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53050 AT5G53050 AT5G53050 AT5G53050 AT5G53050 AT5G53050
fragaria_vesca	FvH4_7g31980 FvH4_7g31980 FvH4_7g31980 FvH4_7g31980 FvH4_7g31980
malus_domestica	MD01G1222600.v1.1 MD07G1293200.v1.1
prunus_persica	Prupe.2G313000_v2.0.a1 Prupe.2G313000_v2.0.a1
pyrus_communis	pycom01g23200
rosa_chinensis	RchiOBHm_Chr1g0381481
rosa_laevigata	RLG00000026229
rosa_multiflora	Rmu_sc0006872.1_g000026
rosa_roxburghii	Rroxscaffold_4G00278630
rosa_rugosa	Rorug01G0428800 Rorug01G0428900
rosa_samantha	Rh1AG452100 Rh1BG409300 Rh1CG423800 Rh1DG440600
rosa_wichuraiana	Rw1G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	774
AccI	GTMKAC	2 cut(s)	45, 930
AccII	CGCG	3 cut(s)	20, 28, 99
AclI	AACGTT	1 cut(s)	524
AclWI	GGATC	5 cut(s)	263, 372, 624, 637, 763
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	75, 453
AcuI	CTGAAG	1 cut(s)	942
AcyI	GRCGYC	3 cut(s)	48, 63, 560
AgsI	TTSAA	5 cut(s)	405, 550, 603, 713, 764
AjnI	CCWGG	1 cut(s)	889
AluBI	AGCT	6 cut(s)	55, 297, 413, 422, 578, 859
AluI	AGCT	6 cut(s)	55, 297, 413, 422, 578, 859
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	5 cut(s)	263, 372, 624, 637, 763
AlwNI	CAGNNNCTG	3 cut(s)	172, 686, 859
AoxI	GGCC	3 cut(s)	94, 101, 155
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	575, 859, 862
ApoI	RAATTY	2 cut(s)	75, 453
AspLEI	GCGC	2 cut(s)	388, 853
AspS9I	GGNCC	4 cut(s)	101, 102, 112, 155
AsuHPI	GGTGA	2 cut(s)	196, 319
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	2 cut(s)	105, 447
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	105, 299
BauI	CACGAG	1 cut(s)	902
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	587, 846, 874
BccI	CCATC	3 cut(s)	355, 433, 545
BceAI	ACGGC	2 cut(s)	109, 204
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	891
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	838
BfaI	CTAG	1 cut(s)	873
BfmI	CTRYAG	1 cut(s)	860
BisI	GCNGC	9 cut(s)	26, 36, 39, 97, 210, 247, 576, 860, 863
BlsI	GCNGC	9 cut(s)	27, 37, 40, 98, 211, 248, 577, 861, 864
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	101, 102, 112, 155
BmiI	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
BmrFI	CCNGG	1 cut(s)	891
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	3 cut(s)	337, 681, 907
BmuI	ACTGGG	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	885, 917
BpmI	CTGGAG	1 cut(s)	912
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	635
BsaHI	GRCGYC	3 cut(s)	48, 63, 560
BsaJI	CCNNGG	5 cut(s)	26, 97, 108, 506, 703
BsaWI	WCCGGW	2 cut(s)	84, 482
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	691, 852
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	5 cut(s)	26, 97, 108, 506, 703
BseGI	GGATG	3 cut(s)	352, 537, 696
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	691, 852
BseRI	GAGGAG	2 cut(s)	230, 501
BseSI	GKGCMC	2 cut(s)	105, 447
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	587, 846, 874
Bsh1236I	CGCG	3 cut(s)	20, 28, 99
Bsh1285I	CGRYCG	2 cut(s)	97, 517
BshFI	GGCC	3 cut(s)	96, 103, 157
BshNI	GGYRCC	1 cut(s)	442
BsiEI	CGRYCG	2 cut(s)	97, 517
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	66, 85, 305, 483
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	3 cut(s)	37, 400, 730
BsnI	GGCC	3 cut(s)	96, 103, 157
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	105, 299, 447
Bsp143I	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
Bsp19I	CCATGG	1 cut(s)	703
BspANI	GGCC	3 cut(s)	96, 103, 157
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	3 cut(s)	20, 28, 99
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
BspMAI	CTGCAG	1 cut(s)	864
BspPI	GGATC	5 cut(s)	263, 372, 624, 637, 763
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	691, 852
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	5 cut(s)	26, 97, 108, 506, 703
BssMI	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
BssNAI	GTATAC	1 cut(s)	931
BssNI	GRCGYC	3 cut(s)	48, 63, 560
BssSI	CACGAG	1 cut(s)	902
BssT1I	CCWWGG	3 cut(s)	108, 506, 703
Bst1107I	GTATAC	1 cut(s)	931
Bst2BI	CACGAG	1 cut(s)	902
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	918
BstACI	GRCGYC	3 cut(s)	48, 63, 560
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstC8I	GCNNGC	4 cut(s)	101, 424, 730, 809
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	3 cut(s)	26, 97, 703
BstF5I	GGATG	3 cut(s)	352, 537, 696
BstFNI	CGCG	3 cut(s)	20, 28, 99
BstHHI	GCGC	2 cut(s)	388, 853
BstKTI	GATC	6 cut(s)	123, 258, 367, 632, 771, 886
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
BstMCI	CGRYCG	2 cut(s)	97, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 347, 419, 859
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	1 cut(s)	860
BstSLI	GKGCMC	2 cut(s)	105, 447
BstUI	CGCG	3 cut(s)	20, 28, 99
BstV1I	GCAGC	3 cut(s)	587, 846, 874
BstX2I	RGATCY	2 cut(s)	629, 768
BstYI	RGATCY	2 cut(s)	629, 768
BstZ17I	GTATAC	1 cut(s)	931
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	96, 103, 157
BtgI	CCRYGG	3 cut(s)	26, 97, 703
BtgZI	GCGATG	2 cut(s)	452, 805
BtsCI	GGATG	3 cut(s)	352, 537, 696
BtsIMutI	CAGTG	1 cut(s)	950
Cac8I	GCNNGC	4 cut(s)	101, 424, 730, 809
CaiI	CAGNNNCTG	3 cut(s)	172, 686, 859
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	2 cut(s)	388, 853
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	4 cut(s)	101, 102, 112, 155
Cfr42I	CCGCGG	2 cut(s)	29, 100
CseI	GACGC	4 cut(s)	9, 56, 71, 568
CviAII	CATG	7 cut(s)	286, 389, 704, 803, 812, 911, 973
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	6 cut(s)	122, 257, 366, 631, 770, 885
DpnII	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
EciI	GGCGGA	2 cut(s)	227, 264
Ecl136II	GAGCTC	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	108, 506, 703
Eco24I	GRGCYC	2 cut(s)	105, 299
Eco47I	GGWCC	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	942
EcoICRI	GAGCTC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	889
EcoT14I	CCWWGG	3 cut(s)	108, 506, 703
EcoT38I	GRGCYC	2 cut(s)	105, 299
ErhI	CCWWGG	3 cut(s)	108, 506, 703
FaeI	CATG	7 cut(s)	289, 392, 707, 806, 815, 914, 976
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	7 cut(s)	285, 388, 703, 802, 811, 910, 972
FauI	CCCGC	2 cut(s)	92, 127
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	45, 930
Fnu4HI	GCNGC	9 cut(s)	26, 36, 39, 97, 210, 247, 576, 860, 863
FokI	GGATG	3 cut(s)	359, 524, 703
FriOI	GRGCYC	2 cut(s)	105, 299
Fsp4HI	GCNGC	9 cut(s)	26, 36, 39, 97, 210, 247, 576, 860, 863
FspBI	CTAG	1 cut(s)	873
GlaI	GCGC	2 cut(s)	387, 852
GluI	GCNGC	9 cut(s)	26, 36, 39, 97, 210, 247, 576, 860, 863
GsuI	CTGGAG	1 cut(s)	912
HaeIII	GGCC	3 cut(s)	96, 103, 157
HapII	CCGG	4 cut(s)	66, 85, 305, 483
HgaI	GACGC	4 cut(s)	9, 56, 71, 568
HhaI	GCGC	2 cut(s)	388, 853
Hin1I	GRCGYC	3 cut(s)	48, 63, 560
Hin1II	CATG	7 cut(s)	289, 392, 707, 806, 815, 914, 976
Hin6I	GCGC	2 cut(s)	386, 851
HinP1I	GCGC	2 cut(s)	386, 851
HincII	GTYRAC	3 cut(s)	46, 583, 719
HindII	GTYRAC	3 cut(s)	46, 583, 719
HinfI	GANTC	2 cut(s)	146, 907
HpaII	CCGG	4 cut(s)	66, 85, 305, 483
HphI	GGTGA	2 cut(s)	196, 319
Hpy166II	GTNNAC	5 cut(s)	46, 503, 583, 719, 931
Hpy188I	TCNGA	3 cut(s)	128, 294, 319
Hpy188III	TCNNGA	5 cut(s)	118, 143, 614, 904, 911
Hpy8I	GTNNAC	5 cut(s)	46, 503, 583, 719, 931
Hpy99I	CGWCG	4 cut(s)	25, 50, 65, 200
HpyAV	CCTTC	5 cut(s)	337, 544, 636, 707, 944
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	5 cut(s)	350, 426, 694, 839, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 347, 419, 859
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	524
Hsp92I	GRCGYC	3 cut(s)	48, 63, 560
Hsp92II	CATG	7 cut(s)	289, 392, 707, 806, 815, 914, 976
HspAI	GCGC	2 cut(s)	386, 851
Ksp22I	TGATCA	1 cut(s)	120
KspI	CCGCGG	2 cut(s)	29, 100
Kzo9I	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
LmnI	GCTCC	3 cut(s)	294, 302, 410
Lsp1109I	GCAGC	3 cut(s)	587, 846, 874
LweI	GCATC	3 cut(s)	337, 681, 907
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	2 cut(s)	184, 478
MalI	GATC	6 cut(s)	122, 257, 366, 631, 770, 885
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
MboII	GAAGA	2 cut(s)	878, 935
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	2 cut(s)	629, 768
MhlI	GDGCHC	3 cut(s)	105, 299, 447
MluCI	AATT	5 cut(s)	75, 351, 453, 648, 759
MlyI	GAGTC	1 cut(s)	916
MmeI	TCCRAC	3 cut(s)	272, 607, 657
MspA1I	CMGCKG	3 cut(s)	28, 99, 578
MspI	CCGG	4 cut(s)	66, 85, 305, 483
MspR9I	CCNGG	1 cut(s)	891
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	3 cut(s)	37, 400, 730
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	3 cut(s)	20, 28, 99
MwoI	GCNNNNNNNGC	4 cut(s)	47, 347, 419, 859
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
NlaIII	CATG	7 cut(s)	289, 392, 707, 806, 815, 914, 976
NlaIV	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
NmuCI	GTSAC	2 cut(s)	184, 478
NspI	RCATGY	1 cut(s)	392
PagI	TCATGA	1 cut(s)	910
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PctI	GAATGC	3 cut(s)	37, 400, 730
PfeI	GAWTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	9 cut(s)	27, 37, 40, 98, 211, 248, 577, 861, 864
PleI	GAGTC	1 cut(s)	915
PpsI	GAGTC	1 cut(s)	915
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	5 cut(s)	70, 103, 156, 444, 631
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	101, 102, 112, 155
PspPPI	RGGWCCY	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	864
PstNI	CAGNNNCTG	3 cut(s)	172, 686, 859
PsuI	RGATCY	2 cut(s)	629, 768
PvuII	CAGCTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	299
SacII	CCGCGG	2 cut(s)	29, 100
SalI	GTCGAC	1 cut(s)	44
SatI	GCNGC	9 cut(s)	26, 36, 39, 97, 210, 247, 576, 860, 863
Sau3AI	GATC	6 cut(s)	120, 255, 364, 629, 768, 883
Sau96I	GGNCC	4 cut(s)	101, 102, 112, 155
SchI	GAGTC	1 cut(s)	916
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	3 cut(s)	105, 299, 447
SfaNI	GCATC	3 cut(s)	337, 681, 907
SfcI	CTRYAG	1 cut(s)	860
Sfr303I	CCGCGG	2 cut(s)	29, 100
SgrBI	CCGCGG	2 cut(s)	29, 100
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	5 cut(s)	75, 351, 453, 648, 759
SspMI	CTAG	1 cut(s)	873
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	889
StyI	CCWWGG	3 cut(s)	108, 506, 703
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	4 cut(s)	45, 258, 495, 513
TasI	AATT	5 cut(s)	75, 351, 453, 648, 759
TauI	GCSGC	6 cut(s)	28, 38, 41, 99, 212, 249
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	1 cut(s)	957
TseFI	GTSAC	2 cut(s)	184, 478
TseI	GCWGC	3 cut(s)	575, 859, 862
Tsp45I	GTSAC	2 cut(s)	184, 478
TspDTI	ATGAA	2 cut(s)	791, 926
TspGWI	ACGGA	2 cut(s)	289, 530
TspRI	CASTG	1 cut(s)	957
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	75, 453
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	45, 930
XspI	CTAG	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.