Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009148

Physical Location & Seq

Genomic Coordinates Forward (+)

21514896 .. 21520421

Gene Structure 5526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGAGAGATCTAGATCCAAGAGAAACTACCACTATGACCAAGACTATGACGGAGATTCCATGCCTAGGTCTAAACCTCGCTACAACAATAATTACCACTTTGGTGGTGGCGGCGGAGGAAATAACAGATACCGTGGCGGCGGCGGTGGTGGAGGTGGAAATGGCCGGCCATCGAAGTCTCATCCTGAAACGATGGCAACAACGACTTATCGAATCCTCTGTCACGACGCTAAAGCAGGAGGTGTTATTGGTAAATCCGGGACAATTATCAAATCTATAAGGCAACACACCGGCGCGTGGATTAACGTGCACGAGCTAGTTCCTGGAGATGCAGAGCGTATCATTGAGATTTCTGATAATCGTAGGCGTGACCCTGATGGGAGAATGCCGTCTTTCTCTCCTGCTCAAGAGGCTTTGTTTAGTGTTCATGACAGGATTTTGGAGAGTGAAGCTCAGTTTGGTTATGGTGGACCTCCGCCGGAAGAGGAGGAGGATTACGGTGGAGTTAGACCTGGTGGAGGGAGAGTTGTGACTAGATTAGTGGTTTCTAGGATGCATGTTGGTTGTTTGTTGGGTAAAGGTGGGAAGATTATTGAGCAGATGAGGATTGAAACTAAGACTCATATTCGGATTCTTCCAAGAGAAAGTAACTTACCTCGTTGTGTTTCACTCTCTGAAGAGATTGTTCAGATTGTAGGTGAACTAAATGCAGTGAAAAACGCTTTAGCCATTGTATCATCTCGTCTAAGGGAGAGTCAGCATCGTGATCGGAGTAATTTCCAAGGGCGTTCACATTCACCAGAACGGTCGTTTGCAGCTGCGGGGGATGATTACATGCCACAGCTAAGAAGACAATCATCCGATAGGTTTCCTCGTGGTAATTTTAGAAATAACAACTTCAGTTCTCGCCAGTCCAACTATGCAGAAGAAGCTCCAGCAGTTCCAGTTGGTGAGAATGTCTACTCCGAAGAGCTTGTGTTCCAGATTCTCTGCCCAGCTGACAAGATTGTTCGGGTTGTTGGGGAATCGCAAGGAATAATTGATTTGCTTCAGAACGAGATCGGCGTGGACGTTAGAGTATCTGACCCAGTTGCTGGATCTGATGAACAGATAATCACCATTTCTTCGGAAGAGGCACCTGATGATCCATTTTTCCCTGCTCAAGAAGCCTTGTTGCACATTCAAACTCAGATCATAGATCTTATTCCGGATAAAGATAATTTAATAACAACAAGATTACTTGTCCCATCTAGAGACTCTATATGTTTGGAAGGGAAAGCAGGATCAGTATCTGAGATATCACGATTAACTGGAACAAGCGTACAAATTCTAGCTAGGGAAGAAATTCCCCGATGTGCTTCTATCAATGATGTTGTTATACAGATTACTGGCGAGATCAGAGCTGCTCGGGAAGCACTTGTTGAATTAACATTACTATTGAGGAGTCATATGTTCAAGGAGCTCTCTCAAAAGGAGACACCACCAGCTTCCACATCCACAACTGGCCCTCTCGAAGGTGTTGCAGGAGTAATGGAGGTAGCTTCATCAAATAACACAATTCAATCTCGTGAAGGTCCTACTAGTTCGAATCTGAACTTGCAGCAAGTTAGCACAATCTTGCCACAGTTTAAGGAAGGTTTCGGATCAGTTGCAAAGGCGGGTGAAAGTGAACACCGGGAAGAGGTTCCTGTCACGACAAGCAGAATGGCGGTACCACTTGTTACTAGAAGCACTCTTGAAGTTGTCTTACCAGAGGCGGTTGTTCCTAAGCTCGTTACGAAATCAAGAAACAAGCTTGCACAAATCAGTGAGTGGTCTGGAGCTAGTGTAACCATAGTTGAAGACAGACCAGAAGAAACACAGAATATCATTCGAATTTCGGGTACACCCGAGCAAGCAGAGAGAGCTCAGAGTTTGCTTCAAGGCTTCATTTTGAGCATACAAGAGGATGGACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010286 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0031053 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032870 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070878 GO:0070887 GO:0070918 GO:0071229 GO:0071310 GO:0071359 GO:0071395 GO:0071407 GO:0071495 GO:0071704 GO:0080134 GO:0090304 GO:0097159 GO:1900150 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

652

Amino Acids

71.34

Weight (kDa)

5.75

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	69 - 118	4.7e-10	KH domain
KH_1	PF00013	178 - 245	1.6e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53060 AT5G53060 AT5G53060
fragaria_vesca	FvH4_7g32010 FvH4_7g32010
malus_domestica	MD01G1222900.v1.1 MD07G1293700.v1.1
prunus_persica	Prupe.2G313500_v2.0.a1
pyrus_communis	pycom01g23230 pycom07g26650
rosa_chinensis	RchiOBHm_Chr1g0381621
rosa_laevigata	RLG00000026220
rosa_multiflora	Rmu_sc0003688.1_g000012 Rmu_sc0005891.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278580
rosa_rugosa	Rorug01G0429700
rosa_samantha	Rh1AG453000 Rh1BG410000 Rh1CG424600 Rh1DG441800 Rh2CG399100
rosa_wichuraiana	Rw1G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1711
AccB1I	GGYRCC	2 cut(s)	1135, 1711
AccB7I	CCANNNNNTGG	1 cut(s)	1094
AccI	GTMKAC	1 cut(s)	960
AccII	CGCG	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	1207
AclWI	GGATC	5 cut(s)	9, 1105, 1139, 1291, 1651
AcoI	YGGCCR	2 cut(s)	163, 167
AcsI	RAATTY	3 cut(s)	1326, 1344, 1875
AcuI	CTGAAG	3 cut(s)	696, 883, 1034
AfaI	GTAC	3 cut(s)	1323, 1713, 1885
AfiI	CCNNNNNNNGG	6 cut(s)	66, 297, 518, 1094, 1514, 1681
AgsI	TTSAA	8 cut(s)	611, 1184, 1424, 1456, 1562, 1739, 1841, 1922
AhlI	ACTAGT	1 cut(s)	1580
AjnI	CCWGG	2 cut(s)	322, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AleI	CACNNNNGTG	1 cut(s)	102
Alw21I	GWGCWC	3 cut(s)	312, 1464, 1909
Alw26I	GTCTC	3 cut(s)	183, 1248, 1469
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	5 cut(s)	9, 1105, 1139, 1291, 1651
AlwNI	CAGNNNCTG	2 cut(s)	1094, 1292
Ama87I	CYCGRG	2 cut(s)	1407, 1889
Aor13HI	TCCGGA	1 cut(s)	1207
AoxI	GGCC	3 cut(s)	163, 167, 1504
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	4 cut(s)	815, 818, 1403, 1600
ApoI	RAATTY	3 cut(s)	1326, 1344, 1875
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
Asp700I	GAANNNNTTC	2 cut(s)	1344, 1683
Asp718I	GGTACC	1 cut(s)	1711
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	470, 1505, 1574, 1952
AsuC2I	CCSGG	2 cut(s)	259, 1676
AsuHPI	GGTGA	5 cut(s)	710, 789, 962, 1108, 1673
AsuII	TTCGAA	2 cut(s)	1586, 1873
AvaI	CYCGRG	2 cut(s)	1407, 1889
AvaII	GGWCC	3 cut(s)	470, 1574, 1952
AvrII	CCTAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	2 cut(s)	1135, 1711
BanII	GRGCYC	2 cut(s)	1464, 1909
BarI	GAAGNNNNNNTAC	2 cut(s)	1731, 1763
BauI	CACGAG	3 cut(s)	311, 873, 1566
BbsI	GAAGAC	2 cut(s)	856, 1848
Bbv12I	GWGCWC	3 cut(s)	312, 1464, 1909
BbvI	GCAGC	4 cut(s)	805, 827, 1390, 1612
BccI	CCATC	5 cut(s)	178, 187, 371, 1255, 1943
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	4 cut(s)	749, 783, 1502, 1536
BciT130I	CCWGG	2 cut(s)	324, 513
BcnI	CCSGG	2 cut(s)	259, 1676
BcoDI	GTCTC	3 cut(s)	183, 1248, 1469
BcuI	ACTAGT	1 cut(s)	1580
BglII	AGATCT	2 cut(s)	8, 1198
BisI	GCNGC	7 cut(s)	112, 139, 142, 816, 819, 1404, 1601
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	7 cut(s)	113, 140, 143, 817, 820, 1405, 1602
Bme1390I	CCNGG	4 cut(s)	259, 324, 513, 1676
Bme18I	GGWCC	3 cut(s)	470, 1574, 1952
BmeT110I	CYCGRG	2 cut(s)	1407, 1889
BmgT120I	GGNCC	4 cut(s)	470, 1505, 1574, 1952
BmiI	GGNNCC	3 cut(s)	1137, 1686, 1713
BmrFI	CCNGG	4 cut(s)	259, 324, 513, 1676
BmrI	ACTGGG	1 cut(s)	1082
BmsI	GCATC	3 cut(s)	319, 543, 769
BmuI	ACTGGG	1 cut(s)	1082
BpiI	GAAGAC	2 cut(s)	856, 1848
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	3 cut(s)	345, 918, 1839
Bpu10I	CCTNAGC	1 cut(s)	1767
Bpu14I	TTCGAA	2 cut(s)	1586, 1873
BpuEI	CTTGAG	2 cut(s)	390, 1146
BpuMI	CCSGG	2 cut(s)	259, 1676
BsaBI	GATNNNNATC	2 cut(s)	13, 1288
BsaJI	CCNNGG	3 cut(s)	65, 133, 781
BsaWI	WCCGGW	1 cut(s)	1207
BsaXI	ACNNNNNCTCC	4 cut(s)	510, 540, 1812, 1842
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 297, 518, 1094, 1514, 1681
Bse118I	RCCGGY	2 cut(s)	165, 290
Bse1I	ACTGG	6 cut(s)	910, 944, 1088, 1315, 1393, 1507
Bse8I	GATNNNNATC	2 cut(s)	13, 1288
BseAI	TCCGGA	1 cut(s)	1207
BseBI	CCWGG	2 cut(s)	324, 513
BseDI	CCNNGG	3 cut(s)	65, 133, 781
BseGI	GGATG	6 cut(s)	181, 558, 832, 857, 1493, 1954
BseJI	GATNNNNATC	2 cut(s)	13, 1288
BseLI	CCNNNNNNNGG	6 cut(s)	66, 297, 518, 1094, 1514, 1681
BseMII	CTCAG	4 cut(s)	467, 1202, 1284, 1922
BseNI	ACTGG	6 cut(s)	910, 944, 1088, 1315, 1393, 1507
BseRI	GAGGAG	3 cut(s)	500, 503, 1456
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	4 cut(s)	805, 827, 1390, 1612
BseYI	CCCAGC	1 cut(s)	994
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	809
BshFI	GGCC	3 cut(s)	165, 169, 1506
BshNI	GGYRCC	2 cut(s)	1135, 1711
BsiEI	CGRYCG	1 cut(s)	809
BsiHKAI	GWGCWC	3 cut(s)	312, 1464, 1909
BsiHKCI	CYCGRG	2 cut(s)	1407, 1889
BsiSI	CCGG	6 cut(s)	166, 258, 291, 479, 1208, 1675
BslFI	GGGAC	2 cut(s)	274, 1229
BslI	CCNNNNNNNGG	6 cut(s)	66, 297, 518, 1094, 1514, 1681
BsmAI	GTCTC	3 cut(s)	183, 1248, 1469
BsmFI	GGGAC	2 cut(s)	274, 1229
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	165, 169, 1506
BsoBI	CYCGRG	2 cut(s)	1407, 1889
Bsp119I	TTCGAA	2 cut(s)	1586, 1873
Bsp1286I	GDGCHC	3 cut(s)	312, 1464, 1909
Bsp13I	TCCGGA	1 cut(s)	1207
BspANI	GGCC	3 cut(s)	165, 169, 1506
BspCNI	CTCAG	4 cut(s)	466, 1201, 1285, 1921
BspEI	TCCGGA	1 cut(s)	1207
BspFNI	CGCG	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	1137, 1686, 1713
BspPI	GGATC	5 cut(s)	9, 1105, 1139, 1291, 1651
BspQI	GCTCTTC	1 cut(s)	963
BspT104I	TTCGAA	2 cut(s)	1586, 1873
BspT107I	GGYRCC	2 cut(s)	1135, 1711
BsrFI	RCCGGY	2 cut(s)	165, 290
BsrI	ACTGG	6 cut(s)	910, 944, 1088, 1315, 1393, 1507
BssAI	RCCGGY	2 cut(s)	165, 290
BssECI	CCNNGG	3 cut(s)	65, 133, 781
BssSI	CACGAG	3 cut(s)	311, 873, 1566
BssT1I	CCWWGG	2 cut(s)	65, 781
Bst2BI	CACGAG	3 cut(s)	311, 873, 1566
Bst2UI	CCWGG	2 cut(s)	324, 513
Bst4CI	ACNGT	5 cut(s)	134, 500, 807, 1626, 1956
Bst6I	CTCTTC	5 cut(s)	477, 672, 963, 1125, 1674
BstBI	TTCGAA	2 cut(s)	1586, 1873
BstC8I	GCNNGC	3 cut(s)	167, 1797, 1896
BstDEI	CTNAG	8 cut(s)	453, 615, 746, 845, 1188, 1293, 1767, 1908
BstDSI	CCRYGG	1 cut(s)	133
BstENI	CCTNNNNNAGG	2 cut(s)	516, 1512
BstF5I	GGATG	6 cut(s)	181, 558, 832, 857, 1493, 1954
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	296
BstMAI	GTCTC	3 cut(s)	183, 1248, 1469
BstMCI	CGRYCG	1 cut(s)	809
BstMWI	GCNNNNNNNGC	5 cut(s)	410, 929, 1166, 1412, 1904
BstNI	CCWGG	2 cut(s)	324, 513
BstNSI	RCATGY	2 cut(s)	560, 838
BstSCI	CCNGG	4 cut(s)	257, 322, 511, 1674
BstSLI	GKGCMC	1 cut(s)	312
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	4 cut(s)	805, 827, 1390, 1612
BstV2I	GAAGAC	2 cut(s)	856, 1848
BstX2I	RGATCY	4 cut(s)	8, 14, 1097, 1198
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	4 cut(s)	8, 14, 1097, 1198
BsuRI	GGCC	3 cut(s)	165, 169, 1506
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	6 cut(s)	181, 558, 832, 857, 1493, 1954
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	717, 1813
Cac8I	GCNNGC	3 cut(s)	167, 1797, 1896
CaiI	CAGNNNCTG	2 cut(s)	1094, 1292
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	2 cut(s)	165, 290
Cfr13I	GGNCC	4 cut(s)	470, 1505, 1574, 1952
CseI	GACGC	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	511
Csp6I	GTAC	3 cut(s)	1322, 1712, 1884
CviAII	CATG	4 cut(s)	61, 428, 557, 835
CviQI	GTAC	3 cut(s)	1322, 1712, 1884
DdeI	CTNAG	8 cut(s)	453, 615, 746, 845, 1188, 1293, 1767, 1908
EaeI	YGGCCR	2 cut(s)	163, 167
Eam1104I	CTCTTC	5 cut(s)	477, 672, 963, 1125, 1674
EarI	CTCTTC	5 cut(s)	477, 672, 963, 1125, 1674
EciI	GGCGGA	2 cut(s)	129, 465
Ecl136II	GAGCTC	2 cut(s)	1462, 1907
Eco130I	CCWWGG	2 cut(s)	65, 781
Eco24I	GRGCYC	2 cut(s)	1464, 1909
Eco32I	GATATC	1 cut(s)	1299
Eco47I	GGWCC	3 cut(s)	470, 1574, 1952
Eco53kI	GAGCTC	2 cut(s)	1462, 1907
Eco57I	CTGAAG	3 cut(s)	696, 883, 1034
Eco88I	CYCGRG	2 cut(s)	1407, 1889
EcoICRI	GAGCTC	2 cut(s)	1462, 1907
EcoNI	CCTNNNNNAGG	2 cut(s)	516, 1512
EcoO109I	RGGNCCY	1 cut(s)	1574
EcoRII	CCWGG	2 cut(s)	322, 511
EcoRV	GATATC	1 cut(s)	1299
EcoT14I	CCWWGG	2 cut(s)	65, 781
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	2 cut(s)	1464, 1909
ErhI	CCWWGG	2 cut(s)	65, 781
FaeI	CATG	4 cut(s)	64, 431, 560, 838
FaqI	GGGAC	2 cut(s)	274, 1229
FatI	CATG	4 cut(s)	60, 427, 556, 834
FauI	CCCGC	2 cut(s)	814, 1651
FauNDI	CATATG	1 cut(s)	1449
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	7 cut(s)	112, 139, 142, 816, 819, 1404, 1601
FokI	GGATG	5 cut(s)	168, 565, 839, 844, 1480
FriOI	GRGCYC	2 cut(s)	1464, 1909
FseI	GGCCGGCC	1 cut(s)	169
Fsp4HI	GCNGC	7 cut(s)	112, 139, 142, 816, 819, 1404, 1601
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	7 cut(s)	112, 139, 142, 816, 819, 1404, 1601
GsaI	CCCAGC	1 cut(s)	998
GsuI	CTGGAG	3 cut(s)	345, 918, 1839
HaeIII	GGCC	3 cut(s)	165, 169, 1506
HapII	CCGG	6 cut(s)	166, 258, 291, 479, 1208, 1675
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	64, 431, 560, 838
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	1793
HpaII	CCGG	6 cut(s)	166, 258, 291, 479, 1208, 1675
HphI	GGTGA	5 cut(s)	710, 789, 962, 1108, 1673
Hpy166II	GTNNAC	8 cut(s)	310, 470, 701, 791, 961, 1069, 1670, 1886
Hpy8I	GTNNAC	8 cut(s)	310, 470, 701, 791, 961, 1069, 1670, 1886
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	4 cut(s)	1265, 1508, 1565, 1628
HpyCH4III	ACNGT	5 cut(s)	134, 500, 807, 1626, 1956
HpyCH4IV	ACGT	2 cut(s)	306, 1071
HpyF10VI	GCNNNNNNNGC	5 cut(s)	410, 929, 1166, 1412, 1904
HpyF3I	CTNAG	8 cut(s)	453, 615, 746, 845, 1188, 1293, 1767, 1908
HpySE526I	ACGT	2 cut(s)	306, 1071
Hsp92II	CATG	4 cut(s)	64, 431, 560, 838
HspAI	GCGC	1 cut(s)	294
Kpn2I	TCCGGA	1 cut(s)	1207
KpnI	GGTACC	1 cut(s)	1715
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	3 cut(s)	937, 1459, 1820
Lsp1109I	GCAGC	4 cut(s)	805, 827, 1390, 1612
LweI	GCATC	3 cut(s)	319, 543, 769
MabI	ACCWGGT	1 cut(s)	511
MaeII	ACGT	2 cut(s)	306, 1071
MaeIII	GTNAC	8 cut(s)	221, 368, 529, 647, 1690, 1720, 1774, 1828
MflI	RGATCY	4 cut(s)	8, 14, 1097, 1198
MhlI	GDGCHC	3 cut(s)	312, 1464, 1909
MlyI	GAGTC	4 cut(s)	613, 763, 1250, 1453
MmeI	TCCRAC	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	558
MroI	TCCGGA	1 cut(s)	1207
MroNI	GCCGGC	1 cut(s)	165
MroXI	GAANNNNTTC	2 cut(s)	1344, 1683
MseI	TTAA	5 cut(s)	303, 1223, 1307, 1427, 1629
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	2 cut(s)	818, 998
MspI	CCGG	6 cut(s)	166, 258, 291, 479, 1208, 1675
MspR9I	CCNGG	4 cut(s)	259, 324, 513, 1676
Mva1269I	GAATGC	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	324, 513
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	5 cut(s)	410, 929, 1166, 1412, 1904
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	259, 1676
NdeI	CATATG	1 cut(s)	1449
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	64, 431, 560, 838
NlaIV	GGNNCC	3 cut(s)	1137, 1686, 1713
NmuCI	GTSAC	4 cut(s)	221, 368, 529, 1690
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	560, 838
NspV	TTCGAA	2 cut(s)	1586, 1873
OliI	CACNNNNGTG	1 cut(s)	102
PagI	TCATGA	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	2 cut(s)	1062, 1068
PctI	GAATGC	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	167
PdmI	GAANNNNTTC	2 cut(s)	1344, 1683
PfeI	GAWTC	6 cut(s)	56, 213, 631, 985, 1025, 1588
PflMI	CCANNNNNTGG	1 cut(s)	1094
PfoI	TCCNGGA	2 cut(s)	257, 322
PkrI	GCNGC	7 cut(s)	113, 140, 143, 817, 820, 1405, 1602
PleI	GAGTC	4 cut(s)	613, 762, 1250, 1452
PpsI	GAGTC	4 cut(s)	613, 762, 1250, 1452
PpuMI	RGGWCCY	1 cut(s)	1574
Psp124BI	GAGCTC	2 cut(s)	1464, 1909
Psp5II	RGGWCCY	1 cut(s)	1574
Psp6I	CCWGG	2 cut(s)	322, 511
PspFI	CCCAGC	1 cut(s)	994
PspGI	CCWGG	2 cut(s)	322, 511
PspN4I	GGNNCC	3 cut(s)	1137, 1686, 1713
PspPI	GGNCC	4 cut(s)	470, 1505, 1574, 1952
PspPPI	RGGWCCY	1 cut(s)	1574
PstNI	CAGNNNCTG	2 cut(s)	1094, 1292
PsuI	RGATCY	4 cut(s)	8, 14, 1097, 1198
PvuII	CAGCTG	2 cut(s)	818, 998
RigI	GGCCGGCC	1 cut(s)	169
RsaI	GTAC	3 cut(s)	1323, 1713, 1885
RsaNI	GTAC	3 cut(s)	1322, 1712, 1884
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	2 cut(s)	1464, 1909
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	5 cut(s)	303, 1223, 1307, 1427, 1629
SatI	GCNGC	7 cut(s)	112, 139, 142, 816, 819, 1404, 1601
Sau96I	GGNCC	4 cut(s)	470, 1505, 1574, 1952
SchI	GAGTC	4 cut(s)	613, 763, 1250, 1453
ScrFI	CCNGG	4 cut(s)	259, 324, 513, 1676
SduI	GDGCHC	3 cut(s)	312, 1464, 1909
SexAI	ACCWGGT	1 cut(s)	511
SfaNI	GCATC	3 cut(s)	319, 543, 769
SfuI	TTCGAA	2 cut(s)	1586, 1873
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	3 cut(s)	470, 1574, 1952
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	405, 1161
SmoI	CTYRAG	2 cut(s)	405, 1161
SpeI	ACTAGT	1 cut(s)	1580
SstI	GAGCTC	2 cut(s)	1464, 1909
StyD4I	CCNGG	4 cut(s)	257, 322, 511, 1674
StyI	CCWWGG	2 cut(s)	65, 781
TaaI	ACNGT	5 cut(s)	134, 500, 807, 1626, 1956
TaiI	ACGT	2 cut(s)	309, 1074
TaqI	TCGA	5 cut(s)	173, 211, 1512, 1586, 1873
TauI	GCSGC	3 cut(s)	114, 141, 144
TfiI	GAWTC	6 cut(s)	56, 213, 631, 985, 1025, 1588
Tru1I	TTAA	5 cut(s)	303, 1223, 1307, 1427, 1629
Tru9I	TTAA	5 cut(s)	303, 1223, 1307, 1427, 1629
TscAI	CASTG	2 cut(s)	717, 1813
TseFI	GTSAC	4 cut(s)	221, 368, 529, 1690
TseI	GCWGC	4 cut(s)	815, 818, 1403, 1600
Tsp45I	GTSAC	4 cut(s)	221, 368, 529, 1690
TspDTI	ATGAA	4 cut(s)	416, 1119, 1533, 1918
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	717, 1813
Van91I	CCANNNNNTGG	1 cut(s)	1094
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	3 cut(s)	470, 1574, 1952
XagI	CCTNNNNNAGG	2 cut(s)	516, 1512
XapI	RAATTY	3 cut(s)	1326, 1344, 1875
XbaI	TCTAGA	2 cut(s)	11, 1250
XceI	RCATGY	2 cut(s)	560, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XmaJI	CCTAGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	2 cut(s)	1344, 1683
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.