Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009148

Physical Location & Seq

Genomic Coordinates Forward (+)

1339102 .. 1363335

Gene Structure 24234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGGAGAGGTCTAGATCGAAGAGATCGTACTACTATGAACAGCAGCAACACCAGGACTATGATACGGAGACCGTCGGCCGGACAAGGCCGAGGTACAACCACCACTACGCCAACGGCAACAACAGCCACCGCCACCGCGGAAGCGGCGGCGGAGGAGGAGGTAGGACCGCGAAGGCGCAGCAGCAGCAGGAGACGGCGTCGGTGACGGTGACGACGACGTATCGGATACTGTGCCACGATATGAAGGCCGGAGGGGTGATTGGGAAGTCCGGCAGCATTATCAAGTCGATCCGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTGGTTCCCGGAGACGAGGAGCGGATTATCGAGATTTCTGACACGCGGCGGCGGGACCCGGAGGGAAGGATCCCGGCGTTCTCTCCGGCGCAGGAGGCTCTGTTTCTGATCCACGAGCGGATTCTGGAGAGTGAGGTCGGCGGCGCCGATGAGGAGGATGAGTACGGCGGCGGTGGTGGAGGTGGCAGAGGAGGTGGTGGTGGGACACGTGTCGCGACGAGGCTTGTGGTGTCGAGAATGCATGTGGGGAGTTTGCTGGGGAAAGGAGGGAAGATAATAGAGCAAATGAGGATGGAGACAAAGACCCAGATTAGGGTTTTGCCAAGGGATCATAATCTGCCTCGCTGTGTTTCAATGTCTGAGGAGATTGTTCAGGTAGTAGGTGATCCGAATAATGTAAAGTCTGCTGTGGAAATTATTTCATCTCGCTTGAGGGAGAGTCAGCACCGTGACCGCAATAATTTCCATGGACGAGCACATTCACCGGAACGGTTCTTTCCTCCTGATGATGATTATATTCCTCATATGAACAATGCAGGACGTAAGTCATCCATGGATGGGGCTGGTTTTGGATCAAGATTATCTGGCCCCAATACGAGGAACAACAACTATGGCTCCCGCTCATCTGGTTATATGATGGAACCAGGGTCTGCTCCAATGGATGATAATGTACAGCCCTTTTACGGAGAAGACCTTGTGTTTCGAATGCTTTGCCCAATTGATAAAGTTGATCTTGTAGTTGGAGAGTCTGATGGAATTATAGAATTGCTTCAAAATGAAATTGGTGTGGATGTCAGGGCTACTGACCGTGTGGCCGGAGCAGATGAACAGATAATCATCATTTCTTCTGAGGAGGGTCCTGATGATGAGCTGTTTCCAGCTCAGGAAGCTTTGCTGCACATCCAAACTCGCATTGTCGATCTTATACCAGACAGGGACAACATTATAACTACTAGGTTGCTTGTTTCGTCAAGTGATATTGGATGCTTAGAGGGAAGAGATGGGTCTTTATCAGACATGAGGCGACTTACTGGCGCAAATATACAAATTCTGCCCAGAGAAGAACTTCCTCTGTGTGTATCAGGGAATGATATGCTTTTACAGATAGTAGGGGAAATAAAAGCAGCTCGAGATGCTCTAGTTGAGGTGACATCAAGACTAAGGAGTCACTTATACAGGGAGTTGTTTCAAAAGGATACCATGCCTCTTTCTGCGCCTGGCCCTGCAAGCAGTGCTCTAGATTACATAAATCCTGTTCGTGAAGCTCGTACCGGAAATGGTACTTCTATAGCTACCTATCAGAATGTGCAAACTGCACAGCCATCAAAGGACTCTGGAGTGGTTGTTAGTGAAGCAGTAAAGCAGAATGAAAGTGAACGGCGTGAAGATGTTCCGACTGGGATGAATAGAATACCTGTGACACTCGTCACTCGGAGTATACTTGAGGTTGTCATACCCGAGAAGGCTGTTTCAAAGCTCATAACAAAATCGAAAAACATGCTTGCTCAAATCAGCGAGTTATCAGGAGCCAGGGTAACCCTGGTAGATGATAGTCCTGAGGTAACCGAAAAGATCATTCAAATTTCAGGTACTCCAGAGCAGACTGAGAGGGCTCAGAGCTTGCTCCAGGGTTTTATTTTAAGCAGTAAGTCTGTCTTTCTCTGTCTGTTAAGTGCTTGTTGTATGCGCCTATTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010286 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0031053 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032870 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070878 GO:0070887 GO:0070918 GO:0071229 GO:0071310 GO:0071359 GO:0071395 GO:0071407 GO:0071495 GO:0071704 GO:0080134 GO:0090304 GO:0097159 GO:1900150 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

676

Amino Acids

74.14

Weight (kDa)

5.87

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	73 - 122	1.5e-10	KH domain
KH_1	PF00013	183 - 250	4.3e-12	KH domain
KH_1	PF00013	590 - 652	1.2e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53060 AT5G53060 AT5G53060
fragaria_vesca	FvH4_7g32010 FvH4_7g32010
malus_domestica	MD01G1222900.v1.1 MD07G1293700.v1.1
prunus_persica	Prupe.2G313500_v2.0.a1
pyrus_communis	pycom01g23230 pycom07g26650
rosa_chinensis	RchiOBHm_Chr1g0381621
rosa_laevigata	RLG00000026220
rosa_multiflora	Rmu_sc0003688.1_g000012 Rmu_sc0005891.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278580
rosa_rugosa	Rorug01G0429700
rosa_samantha	Rh1AG453000 Rh1BG410000 Rh1CG424600 Rh1DG441800 Rh2CG399100
rosa_wichuraiana	Rw1G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1274
AasI	GACNNNNNNGTC	1 cut(s)	1491
AccB1I	GGYRCC	1 cut(s)	470
AccBSI	CCGCTC	3 cut(s)	349, 445, 948
AccI	GTMKAC	1 cut(s)	1765
AccII	CGCG	5 cut(s)	138, 170, 308, 373, 542
AclWI	GGATC	8 cut(s)	283, 320, 391, 404, 430, 663, 707, 907
AcoI	YGGCCR	2 cut(s)	76, 1140
AcsI	RAATTY	2 cut(s)	1374, 1908
AcvI	CACGTG	1 cut(s)	536
AcyI	GRCGYC	2 cut(s)	197, 471
AfaI	GTAC	7 cut(s)	29, 95, 491, 999, 1597, 1609, 1918
AfiI	CCNNNNNNNGG	7 cut(s)	78, 309, 639, 640, 885, 924, 1010
AflIII	ACRYGT	2 cut(s)	533, 535
AgsI	TTSAA	5 cut(s)	681, 1100, 1517, 1800, 1907
AjnI	CCWGG	6 cut(s)	51, 970, 1543, 1856, 1866, 1953
AluBI	AGCT	9 cut(s)	328, 1198, 1208, 1217, 1454, 1592, 1619, 1804, 1947
AluI	AGCT	9 cut(s)	328, 1198, 1208, 1217, 1454, 1592, 1619, 1804, 1947
Alw21I	GWGCWC	3 cut(s)	324, 805, 1564
Alw26I	GTCTC	4 cut(s)	62, 185, 333, 617
Alw44I	GTGCAC	1 cut(s)	320
AlwI	GGATC	8 cut(s)	283, 320, 391, 404, 430, 663, 707, 907
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	2 cut(s)	1455, 1784
AoxI	GGCC	6 cut(s)	76, 86, 246, 913, 1140, 1546
ApaLI	GTGCAC	1 cut(s)	320
ApeKI	GCWGC	8 cut(s)	43, 178, 181, 184, 273, 295, 1222, 1451
ApoI	RAATTY	2 cut(s)	1374, 1908
Asp700I	GAANNNNTTC	3 cut(s)	1095, 1392, 1716
AspLEI	GCGC	7 cut(s)	178, 308, 418, 473, 1364, 1543, 2016
AspS9I	GGNCC	5 cut(s)	165, 382, 914, 1184, 1547
AsuC2I	CCSGG	3 cut(s)	336, 386, 401
AsuHPI	GGTGA	6 cut(s)	214, 220, 268, 722, 801, 1486
AsuII	TTCGAA	1 cut(s)	1030
AvaI	CYCGRG	2 cut(s)	1455, 1784
AvaII	GGWCC	3 cut(s)	165, 382, 1184
AxyI	CCTNAGG	1 cut(s)	1884
BaeGI	GKGCMC	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	1942
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	2 cut(s)	323, 440
BbrPI	CACGTG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	1023
Bbv12I	GWGCWC	3 cut(s)	324, 805, 1564
BbvI	GCAGC	8 cut(s)	55, 190, 193, 196, 285, 307, 1209, 1463
BccI	CCATC	6 cut(s)	613, 878, 958, 1073, 1322, 1657
BceAI	ACGGC	4 cut(s)	130, 210, 508, 1721
BcgI	CGANNNNNNTGC	4 cut(s)	1020, 1054, 1807, 1841
BciT130I	CCWGG	6 cut(s)	53, 972, 1545, 1858, 1868, 1955
BciVI	GTATCC	2 cut(s)	219, 1516
BcnI	CCSGG	3 cut(s)	336, 386, 401
BcoDI	GTCTC	4 cut(s)	62, 185, 333, 617
BfaI	CTAG	4 cut(s)	12, 1281, 1466, 1565
BfmI	CTRYAG	1 cut(s)	1614
BfoI	RGCGCY	1 cut(s)	474
BfuI	GTATCC	2 cut(s)	219, 1516
Bme1390I	CCNGG	9 cut(s)	53, 336, 386, 401, 972, 1545, 1858, 1868, 1955
Bme18I	GGWCC	3 cut(s)	165, 382, 1184
BmeT110I	CYCGRG	2 cut(s)	1455, 1784
BmgT120I	GGNCC	5 cut(s)	165, 382, 914, 1184, 1547
BmrFI	CCNGG	9 cut(s)	53, 336, 386, 401, 972, 1545, 1858, 1868, 1955
BmrI	ACTGGG	1 cut(s)	1734
BmsI	GCATC	2 cut(s)	1301, 1450
BmuI	ACTGGG	1 cut(s)	1734
BoxI	GACNNNNGTC	3 cut(s)	536, 871, 1751
BpiI	GAAGAC	1 cut(s)	1023
BpmI	CTGGAG	4 cut(s)	473, 1683, 1905, 1937
Bpu10I	CCTNAGC	1 cut(s)	1209
Bpu14I	TTCGAA	1 cut(s)	1030
BpuEI	CTTGAG	2 cut(s)	778, 1790
BpuMI	CCSGG	3 cut(s)	336, 386, 401
BsaAI	YACGTR	1 cut(s)	536
BsaBI	GATNNNNATC	2 cut(s)	660, 1163
BsaHI	GRCGYC	2 cut(s)	197, 471
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	9 cut(s)	89, 136, 650, 793, 879, 971, 1857, 1866, 1954
BsaWI	WCCGGW	2 cut(s)	811, 1598
Bsc4I	CCNNNNNNNGG	7 cut(s)	78, 309, 639, 640, 885, 924, 1010
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	1363, 1729
Bse21I	CCTNAGG	1 cut(s)	1884
Bse8I	GATNNNNATC	2 cut(s)	660, 1163
BseBI	CCWGG	6 cut(s)	53, 972, 1545, 1858, 1868, 1955
BseDI	CCNNGG	9 cut(s)	89, 136, 650, 793, 879, 971, 1857, 1866, 1954
BseGI	GGATG	9 cut(s)	490, 624, 875, 889, 994, 1123, 1227, 1316, 1734
BseJI	GATNNNNATC	2 cut(s)	660, 1163
BseLI	CCNNNNNNNGG	7 cut(s)	78, 309, 639, 640, 885, 924, 1010
BseMII	CTCAG	6 cut(s)	678, 1167, 1223, 1875, 1923, 1955
BseNI	ACTGG	2 cut(s)	1363, 1729
BseRI	GAGGAG	7 cut(s)	168, 171, 359, 494, 531, 704, 1193
BseSI	GKGCMC	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	8 cut(s)	55, 190, 193, 196, 285, 307, 1209, 1463
BseYI	CCCAGC	1 cut(s)	583
BsgI	GTGCAG	2 cut(s)	1208, 1626
Bsh1236I	CGCG	5 cut(s)	138, 170, 308, 373, 542
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	6 cut(s)	78, 88, 248, 915, 1142, 1548
BshNI	GGYRCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	3 cut(s)	324, 805, 1564
BsiHKCI	CYCGRG	2 cut(s)	1455, 1784
BslFI	GGGAC	3 cut(s)	395, 544, 1277
BslI	CCNNNNNNNGG	7 cut(s)	78, 309, 639, 640, 885, 924, 1010
BsmAI	GTCTC	4 cut(s)	62, 185, 333, 617
BsmBI	CGTCTC	2 cut(s)	185, 333
BsmFI	GGGAC	3 cut(s)	395, 544, 1277
BsmI	GAATGC	2 cut(s)	570, 1038
BsnI	GGCC	6 cut(s)	78, 88, 248, 915, 1142, 1548
Bso31I	GGTCTC	1 cut(s)	62
BsoBI	CYCGRG	2 cut(s)	1455, 1784
Bsp119I	TTCGAA	1 cut(s)	1030
Bsp1286I	GDGCHC	4 cut(s)	324, 805, 1564, 1942
Bsp1407I	TGTACA	1 cut(s)	997
Bsp19I	CCATGG	2 cut(s)	793, 879
Bsp68I	TCGCGA	1 cut(s)	542
BspANI	GGCC	6 cut(s)	78, 88, 248, 915, 1142, 1548
BspCNI	CTCAG	6 cut(s)	679, 1168, 1222, 1876, 1924, 1954
BspFNI	CGCG	5 cut(s)	138, 170, 308, 373, 542
BspPI	GGATC	8 cut(s)	283, 320, 391, 404, 430, 663, 707, 907
BspT104I	TTCGAA	1 cut(s)	1030
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	62
BsrBI	CCGCTC	3 cut(s)	349, 445, 948
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	2 cut(s)	1363, 1729
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	9 cut(s)	89, 136, 650, 793, 879, 971, 1857, 1866, 1954
BssNAI	GTATAC	1 cut(s)	1766
BssNI	GRCGYC	2 cut(s)	197, 471
BssSI	CACGAG	2 cut(s)	323, 440
BssT1I	CCWWGG	3 cut(s)	650, 793, 879
Bst1107I	GTATAC	1 cut(s)	1766
Bst2BI	CACGAG	2 cut(s)	323, 440
Bst2UI	CCWGG	6 cut(s)	53, 972, 1545, 1858, 1868, 1955
Bst4CI	ACNGT	6 cut(s)	73, 208, 231, 776, 819, 1136
Bst6I	CTCTTC	2 cut(s)	14, 1318
BstACI	GRCGYC	2 cut(s)	197, 471
BstAPI	GCANNNNNTGC	1 cut(s)	1559
BstAUI	TGTACA	1 cut(s)	997
BstBAI	YACGTR	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	1030
BstC8I	GCNNGC	3 cut(s)	1555, 1830, 1949
BstDEI	CTNAG	8 cut(s)	687, 1176, 1209, 1315, 1487, 1884, 1932, 1941
BstDSI	CCRYGG	3 cut(s)	136, 793, 879
BstEII	GGTNACC	2 cut(s)	1861, 1888
BstF5I	GGATG	9 cut(s)	490, 624, 875, 889, 994, 1123, 1227, 1316, 1734
BstFNI	CGCG	5 cut(s)	138, 170, 308, 373, 542
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	7 cut(s)	178, 308, 418, 473, 1364, 1543, 2016
BstMAI	GTCTC	4 cut(s)	62, 185, 333, 617
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	8 cut(s)	123, 144, 184, 422, 1214, 1460, 1554, 1559
BstNI	CCWGG	6 cut(s)	53, 972, 1545, 1858, 1868, 1955
BstNSI	RCATGY	2 cut(s)	572, 1828
BstPAI	GACNNNNGTC	3 cut(s)	536, 871, 1751
BstPI	GGTNACC	2 cut(s)	1861, 1888
BstSCI	CCNGG	9 cut(s)	51, 334, 384, 399, 970, 1543, 1856, 1866, 1953
BstSFI	CTRYAG	1 cut(s)	1614
BstSLI	GKGCMC	1 cut(s)	324
BstUI	CGCG	5 cut(s)	138, 170, 308, 373, 542
BstV1I	GCAGC	8 cut(s)	55, 190, 193, 196, 285, 307, 1209, 1463
BstV2I	GAAGAC	1 cut(s)	1023
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	1766
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	1884
BsuI	GTATCC	2 cut(s)	219, 1516
BsuRI	GGCC	6 cut(s)	78, 88, 248, 915, 1142, 1548
BtgI	CCRYGG	3 cut(s)	136, 793, 879
BtsCI	GGATG	9 cut(s)	490, 624, 875, 889, 994, 1123, 1227, 1316, 1734
BtsI	GCAGTG	1 cut(s)	1564
BtsIMutI	CAGTG	1 cut(s)	1564
BtuMI	TCGCGA	1 cut(s)	542
Cac8I	GCNNGC	3 cut(s)	1555, 1830, 1949
CaiI	CAGNNNCTG	1 cut(s)	977
CfoI	GCGC	7 cut(s)	178, 308, 418, 473, 1364, 1543, 2016
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	5 cut(s)	165, 382, 914, 1184, 1547
Cfr42I	CCGCGG	1 cut(s)	139
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	7 cut(s)	28, 94, 490, 998, 1596, 1608, 1917
CviAII	CATG	6 cut(s)	569, 794, 880, 1345, 1528, 1825
CviQI	GTAC	7 cut(s)	28, 94, 490, 998, 1596, 1608, 1917
DdeI	CTNAG	8 cut(s)	687, 1176, 1209, 1315, 1487, 1884, 1932, 1941
DinI	GGCGCC	1 cut(s)	472
DrdI	GACNNNNNNGTC	1 cut(s)	1491
DseDI	GACNNNNNNGTC	1 cut(s)	1491
EaeI	YGGCCR	2 cut(s)	76, 1140
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	14, 1318
EarI	CTCTTC	2 cut(s)	14, 1318
EciI	GGCGGA	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	76
Eco130I	CCWWGG	3 cut(s)	650, 793, 879
Eco24I	GRGCYC	1 cut(s)	1942
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	3 cut(s)	165, 382, 1184
Eco52I	CGGCCG	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	536
Eco81I	CCTNAGG	1 cut(s)	1884
Eco88I	CYCGRG	2 cut(s)	1455, 1784
Eco91I	GGTNACC	2 cut(s)	1861, 1888
EcoO109I	RGGNCCY	2 cut(s)	382, 1184
EcoO65I	GGTNACC	2 cut(s)	1861, 1888
EcoRII	CCWGG	6 cut(s)	51, 970, 1543, 1856, 1866, 1953
EcoT14I	CCWWGG	3 cut(s)	650, 793, 879
EcoT22I	ATGCAT	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	1942
EgeI	GGCGCC	1 cut(s)	472
EheI	GGCGCC	1 cut(s)	472
ErhI	CCWWGG	3 cut(s)	650, 793, 879
Esp3I	CGTCTC	2 cut(s)	185, 333
FaeI	CATG	6 cut(s)	572, 797, 883, 1348, 1531, 1828
FalI	AAGNNNNNCTT	4 cut(s)	1044, 1076, 1967, 1999
FaqI	GGGAC	3 cut(s)	395, 544, 1277
FatI	CATG	6 cut(s)	568, 793, 879, 1344, 1527, 1824
FauI	CCCGC	2 cut(s)	372, 953
FauNDI	CATATG	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	1765
FokI	GGATG	9 cut(s)	497, 631, 862, 896, 1001, 1130, 1214, 1323, 1741
FriOI	GRGCYC	1 cut(s)	1942
FspBI	CTAG	4 cut(s)	12, 1281, 1466, 1565
GlaI	GCGC	7 cut(s)	177, 307, 417, 472, 1363, 1542, 2015
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	4 cut(s)	473, 1683, 1905, 1937
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	6 cut(s)	78, 88, 248, 915, 1142, 1548
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	7 cut(s)	178, 308, 418, 473, 1364, 1543, 2016
Hin1I	GRCGYC	2 cut(s)	197, 471
Hin1II	CATG	6 cut(s)	572, 797, 883, 1348, 1531, 1828
Hin6I	GCGC	7 cut(s)	176, 306, 416, 471, 1362, 1541, 2014
HinP1I	GCGC	7 cut(s)	176, 306, 416, 471, 1362, 1541, 2014
HindIII	AAGCTT	1 cut(s)	1215
HinfI	GANTC	5 cut(s)	448, 766, 1073, 1492, 1658
HphI	GGTGA	6 cut(s)	214, 220, 268, 722, 801, 1486
Hpy166II	GTNNAC	3 cut(s)	322, 1703, 1766
Hpy8I	GTNNAC	3 cut(s)	322, 1703, 1766
Hpy99I	CGWCG	5 cut(s)	77, 202, 217, 220, 547
HpyAV	CCTTC	4 cut(s)	166, 238, 387, 1783
HpyCH4III	ACNGT	6 cut(s)	73, 208, 231, 776, 819, 1136
HpyCH4IV	ACGT	4 cut(s)	218, 318, 535, 868
HpyCH4V	TGCA	7 cut(s)	322, 568, 863, 1225, 1553, 1636, 1643
HpyF10VI	GCNNNNNNNGC	8 cut(s)	123, 144, 184, 422, 1214, 1460, 1554, 1559
HpyF3I	CTNAG	8 cut(s)	687, 1176, 1209, 1315, 1487, 1884, 1932, 1941
HpySE526I	ACGT	4 cut(s)	218, 318, 535, 868
Hsp92I	GRCGYC	2 cut(s)	197, 471
Hsp92II	CATG	6 cut(s)	572, 797, 883, 1348, 1531, 1828
HspAI	GCGC	7 cut(s)	176, 306, 416, 471, 1362, 1541, 2014
KasI	GGCGCC	1 cut(s)	470
KflI	GGGWCCC	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	139
LmnI	GCTCC	6 cut(s)	346, 947, 985, 1145, 1853, 1956
Lsp1109I	GCAGC	8 cut(s)	55, 190, 193, 196, 285, 307, 1209, 1463
LweI	GCATC	2 cut(s)	1301, 1450
MaeI	CTAG	4 cut(s)	12, 1281, 1466, 1565
MaeII	ACGT	4 cut(s)	218, 318, 535, 868
MaeIII	GTNAC	9 cut(s)	202, 208, 776, 1474, 1493, 1744, 1753, 1861, 1888
MbiI	CCGCTC	3 cut(s)	349, 445, 948
MboII	GAAGA	7 cut(s)	31, 610, 1028, 1164, 1335, 1400, 1724
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	4 cut(s)	324, 805, 1564, 1942
MluCI	AATT	8 cut(s)	741, 787, 1044, 1083, 1091, 1107, 1374, 1908
Mly113I	GGCGCC	1 cut(s)	471
MlyI	GAGTC	4 cut(s)	775, 1082, 1501, 1652
MmeI	TCCRAC	2 cut(s)	1048, 1745
Mph1103I	ATGCAT	1 cut(s)	570
MroXI	GAANNNNTTC	3 cut(s)	1095, 1392, 1716
MseI	TTAA	2 cut(s)	1967, 1997
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	9 cut(s)	53, 336, 386, 401, 972, 1545, 1858, 1868, 1955
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	2 cut(s)	570, 1038
MvaI	CCWGG	6 cut(s)	53, 972, 1545, 1858, 1868, 1955
MvnI	CGCG	5 cut(s)	138, 170, 308, 373, 542
MwoI	GCNNNNNNNGC	8 cut(s)	123, 144, 184, 422, 1214, 1460, 1554, 1559
NarI	GGCGCC	1 cut(s)	471
NciI	CCSGG	3 cut(s)	336, 386, 401
NcoI	CCATGG	2 cut(s)	793, 879
NdeI	CATATG	1 cut(s)	852
NlaIII	CATG	6 cut(s)	572, 797, 883, 1348, 1531, 1828
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	7 cut(s)	202, 208, 776, 1474, 1493, 1744, 1753
NruI	TCGCGA	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	570
NspI	RCATGY	2 cut(s)	572, 1828
NspV	TTCGAA	1 cut(s)	1030
PaeR7I	CTCGAG	1 cut(s)	1455
PcsI	WCGNNNNNNNCGW	4 cut(s)	23, 212, 471, 1591
PctI	GAATGC	2 cut(s)	570, 1038
PdmI	GAANNNNTTC	3 cut(s)	1095, 1392, 1716
PfeI	GAWTC	1 cut(s)	448
PflFI	GACNNNGTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	334
PleI	GAGTC	4 cut(s)	774, 1081, 1500, 1652
PluTI	GGCGCC	1 cut(s)	474
PmaCI	CACGTG	1 cut(s)	536
PmlI	CACGTG	1 cut(s)	536
PpsI	GAGTC	4 cut(s)	774, 1081, 1500, 1652
Ppu21I	YACGTR	1 cut(s)	536
PpuMI	RGGWCCY	2 cut(s)	382, 1184
PshAI	GACNNNNGTC	3 cut(s)	536, 871, 1751
PsiI	TTATAA	1 cut(s)	1274
Psp5II	RGGWCCY	2 cut(s)	382, 1184
Psp6I	CCWGG	6 cut(s)	51, 970, 1543, 1856, 1866, 1953
PspCI	CACGTG	1 cut(s)	536
PspEI	GGTNACC	2 cut(s)	1861, 1888
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	6 cut(s)	51, 970, 1543, 1856, 1866, 1953
PspPI	GGNCC	5 cut(s)	165, 382, 914, 1184, 1547
PspPPI	RGGWCCY	2 cut(s)	382, 1184
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	196
RruI	TCGCGA	1 cut(s)	542
RsaI	GTAC	7 cut(s)	29, 95, 491, 999, 1597, 1609, 1918
RsaNI	GTAC	7 cut(s)	28, 94, 490, 998, 1596, 1608, 1917
SacII	CCGCGG	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	1967, 1997
Sau96I	GGNCC	5 cut(s)	165, 382, 914, 1184, 1547
SchI	GAGTC	4 cut(s)	775, 1082, 1501, 1652
ScrFI	CCNGG	9 cut(s)	53, 336, 386, 401, 972, 1545, 1858, 1868, 1955
SduI	GDGCHC	4 cut(s)	324, 805, 1564, 1942
SfaNI	GCATC	2 cut(s)	1301, 1450
SfcI	CTRYAG	1 cut(s)	1614
SfoI	GGCGCC	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	1455
Sfr303I	CCGCGG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	1030
SgrAI	CRCCGGYG	1 cut(s)	302
SgrBI	CCGCGG	1 cut(s)	139
SinI	GGWCC	3 cut(s)	165, 382, 1184
SlaI	CTCGAG	1 cut(s)	1455
SmlI	CTYRAG	3 cut(s)	757, 1455, 1769
SmoI	CTYRAG	3 cut(s)	757, 1455, 1769
Sse9I	AATT	8 cut(s)	741, 787, 1044, 1083, 1091, 1107, 1374, 1908
SspDI	GGCGCC	1 cut(s)	470
SspMI	CTAG	4 cut(s)	12, 1281, 1466, 1565
StyD4I	CCNGG	9 cut(s)	51, 334, 384, 399, 970, 1543, 1856, 1866, 1953
StyI	CCWWGG	3 cut(s)	650, 793, 879
TaaI	ACNGT	6 cut(s)	73, 208, 231, 776, 819, 1136
TaiI	ACGT	4 cut(s)	221, 321, 538, 871
TaqI	TCGA	8 cut(s)	17, 287, 357, 560, 1030, 1245, 1456, 1817
TasI	AATT	8 cut(s)	741, 787, 1044, 1083, 1091, 1107, 1374, 1908
TatI	WGTACW	1 cut(s)	997
TauI	GCSGC	6 cut(s)	147, 150, 376, 379, 471, 498
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	2 cut(s)	1967, 1997
Tru9I	TTAA	2 cut(s)	1967, 1997
TscAI	CASTG	1 cut(s)	1564
TseFI	GTSAC	7 cut(s)	202, 208, 776, 1474, 1493, 1744, 1753
TseI	GCWGC	8 cut(s)	43, 178, 181, 184, 273, 295, 1222, 1451
Tsp45I	GTSAC	7 cut(s)	202, 208, 776, 1474, 1493, 1744, 1753
TspDTI	ATGAA	8 cut(s)	51, 257, 738, 869, 1119, 1167, 1710, 1745
TspGWI	ACGGA	2 cut(s)	80, 1026
TspRI	CASTG	1 cut(s)	1564
Tth111I	GACNNNGTC	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	320
VpaK11BI	GGWCC	3 cut(s)	165, 382, 1184
XapI	RAATTY	2 cut(s)	1374, 1908
XbaI	TCTAGA	2 cut(s)	11, 1564
XceI	RCATGY	2 cut(s)	572, 1828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1864
XhoI	CTCGAG	1 cut(s)	1455
XmiI	GTMKAC	1 cut(s)	1765
XmnI	GAANNNNTTC	3 cut(s)	1095, 1392, 1716
XspI	CTAG	4 cut(s)	12, 1281, 1466, 1565
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.