Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005891.1

Orthogroup ID

OG0009148

Physical Location & Seq

Genomic Coordinates Reverse (-)

25788 .. 26078

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005891.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgtcagtcagcagcggcagagaaggtagggcggtgaaggtgcagcagcagcaggagacggcattggtgacggggatgatgacatatcagattctatgccacgatatgaaggtcggagcgatgatttggaaatcaagcagcattatcaagtggatccaacagcacatcaacgtgtggatcaacgtgaacgagctgattcccagagacgaggagcggattatcgagattttcggcgtgactcggagggaaggatccaggcattctttccagcataggaggctttatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010286 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0031053 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032870 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070878 GO:0070887 GO:0070918 GO:0071229 GO:0071310 GO:0071359 GO:0071395 GO:0071407 GO:0071495 GO:0071704 GO:0080134 GO:0090304 GO:0097159 GO:1900150 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

96

Amino Acids

11.32

Weight (kDa)

9.73

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53060 AT5G53060 AT5G53060
fragaria_vesca	FvH4_7g32010 FvH4_7g32010
malus_domestica	MD01G1222900.v1.1 MD07G1293700.v1.1
prunus_persica	Prupe.2G313500_v2.0.a1
pyrus_communis	pycom01g23230 pycom07g26650
rosa_chinensis	RchiOBHm_Chr1g0381621
rosa_laevigata	RLG00000026220
rosa_multiflora	Rmu_sc0003688.1_g000012 Rmu_sc0005891.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278580
rosa_rugosa	Rorug01G0429700
rosa_samantha	Rh1AG453000 Rh1BG410000 Rh1CG424600 Rh1DG441800 Rh2CG399100
rosa_wichuraiana	Rw1G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	3 cut(s)	15, 32, 214
AclWI	GGATC	5 cut(s)	148, 161, 185, 246, 259
AflIII	ACRYGT	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	50, 198
AlwI	GGATC	5 cut(s)	148, 161, 185, 246, 259
ApeKI	GCWGC	5 cut(s)	12, 43, 46, 49, 138
AsuHPI	GGTGA	2 cut(s)	46, 79
BamHI	GGATCC	2 cut(s)	153, 251
BbvI	GCAGC	5 cut(s)	24, 55, 58, 61, 150
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	50, 198
BisI	GCNGC	6 cut(s)	13, 16, 44, 47, 50, 139
BlsI	GCNGC	6 cut(s)	14, 17, 45, 48, 51, 140
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	155, 253
BmrFI	CCNGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	5 cut(s)	24, 55, 58, 61, 150
BsgI	GTGCAG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	50, 198
BsmBI	CGTCTC	2 cut(s)	50, 198
BsmI	GAATGC	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	153, 177, 251
BspACI	CCGC	3 cut(s)	15, 32, 214
BspLI	GGNNCC	2 cut(s)	155, 253
BspPI	GGATC	5 cut(s)	148, 161, 185, 246, 259
BsrBI	CCGCTC	1 cut(s)	214
BssMI	GATC	3 cut(s)	153, 177, 251
Bst2UI	CCWGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	156, 180, 254
BstMAI	GTCTC	2 cut(s)	50, 198
BstMBI	GATC	3 cut(s)	153, 177, 251
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 277
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	5 cut(s)	24, 55, 58, 61, 150
BstX2I	RGATCY	2 cut(s)	153, 251
BstYI	RGATCY	2 cut(s)	153, 251
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	81
CviJI	RGCY	2 cut(s)	193, 280
CviKI_1	RGCY	2 cut(s)	193, 280
DpnI	GATC	3 cut(s)	155, 179, 253
DpnII	GATC	3 cut(s)	153, 177, 251
EcoRII	CCWGG	1 cut(s)	254
Esp3I	CGTCTC	2 cut(s)	50, 198
FaiI	YATR	4 cut(s)	85, 97, 107, 273
Fnu4HI	GCNGC	6 cut(s)	13, 16, 44, 47, 50, 139
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	6 cut(s)	13, 16, 44, 47, 50, 139
GluI	GCNGC	6 cut(s)	13, 16, 44, 47, 50, 139
HinfI	GANTC	3 cut(s)	91, 196, 238
HphI	GGTGA	2 cut(s)	46, 79
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	90, 116, 243, 290
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	4 cut(s)	17, 31, 103, 242
HpyCH4IV	ACGT	2 cut(s)	171, 183
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 277
HpySE526I	ACGT	2 cut(s)	171, 183
Kzo9I	GATC	3 cut(s)	153, 177, 251
LmnI	GCTCC	2 cut(s)	116, 211
LpnPI	CCDG	5 cut(s)	38, 214, 241, 268, 281
Lsp1109I	GCAGC	5 cut(s)	24, 55, 58, 61, 150
MaeII	ACGT	2 cut(s)	171, 183
MaeIII	GTNAC	2 cut(s)	67, 235
MalI	GATC	3 cut(s)	155, 179, 253
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	3 cut(s)	153, 177, 251
MflI	RGATCY	2 cut(s)	153, 251
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	94, 181
MnlI	CCTC	3 cut(s)	202, 237, 270
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	49, 277
NdeII	GATC	3 cut(s)	153, 177, 251
NlaIV	GGNNCC	2 cut(s)	155, 253
NmuCI	GTSAC	2 cut(s)	67, 235
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	91, 196
PkrI	GCNGC	6 cut(s)	14, 17, 45, 48, 51, 140
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	155, 253
PsuI	RGATCY	2 cut(s)	153, 251
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	6 cut(s)	13, 16, 44, 47, 50, 139
Sau3AI	GATC	3 cut(s)	153, 177, 251
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	6 cut(s)	28, 42, 114, 174, 186, 195
SmiMI	CAYNNNNRTG	1 cut(s)	170
SsiI	CCGC	3 cut(s)	15, 32, 214
StyD4I	CCNGG	1 cut(s)	254
TaiI	ACGT	2 cut(s)	174, 186
TaqI	TCGA	1 cut(s)	222
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	91, 196
TseFI	GTSAC	2 cut(s)	67, 235
TseI	GCWGC	5 cut(s)	12, 43, 46, 49, 138
Tsp45I	GTSAC	2 cut(s)	67, 235
TspDTI	ATGAA	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.