Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009148

Physical Location & Seq

Genomic Coordinates Forward (+)

54277972 .. 54278187

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG399100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTCGGCAGATCTAAAGTTGTTGCTGTTGGGTGGGCCCGAATGCATGCAGTCCCATCAGTCTTGGACGATGGACGGTGACAGAGAAGGTAGGGCGGTGAAGGCGCAACAGCAGCAGGAGACGACGACGCTGATGGTGACGACGACGTATCGGATTCTGTGCCACGACATGAAGGCCAAAGGGGTGATTGGGAAGTCTGGTAGCATTATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010286 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0031053 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032870 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070878 GO:0070887 GO:0070918 GO:0071229 GO:0071310 GO:0071359 GO:0071395 GO:0071407 GO:0071495 GO:0071704 GO:0080134 GO:0090304 GO:0097159 GO:1900150 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

71

Amino Acids

7.82

Weight (kDa)

8.71

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53060 AT5G53060 AT5G53060
fragaria_vesca	FvH4_7g32010 FvH4_7g32010
malus_domestica	MD01G1222900.v1.1 MD07G1293700.v1.1
prunus_persica	Prupe.2G313500_v2.0.a1
pyrus_communis	pycom01g23230 pycom07g26650
rosa_chinensis	RchiOBHm_Chr1g0381621
rosa_laevigata	RLG00000026220
rosa_multiflora	Rmu_sc0003688.1_g000012 Rmu_sc0005891.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278580
rosa_rugosa	Rorug01G0429700
rosa_samantha	Rh1AG453000 Rh1BG410000 Rh1CG424600 Rh1DG441800 Rh2CG399100
rosa_wichuraiana	Rw1G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	35, 174
ApaI	GGGCCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	35, 36
AsuHPI	GGTGA	4 cut(s)	89, 109, 148, 196
BaeGI	GKGCMC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	63, 64, 127
BcoDI	GTCTC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	35, 36
BmiI	GGNNCC	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	37, 176
BslFI	GGGAC	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	37, 176
Bsp120I	GGGCCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	37, 176
BspLI	GGNNCC	1 cut(s)	37
BssMI	GATC	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 112
BstNSI	RCATGY	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	37, 176
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	35, 36
CseI	GACGC	1 cut(s)	136
CviAII	CATG	2 cut(s)	46, 169
CviJI	RGCY	2 cut(s)	37, 176
CviKI_1	RGCY	2 cut(s)	37, 176
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	49, 172
FaiI	YATR	2 cut(s)	47, 170
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	45, 168
Fnu4HI	GCNGC	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	37, 176
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	49, 172
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	4 cut(s)	89, 109, 148, 196
Hpy188I	TCNGA	1 cut(s)	153
Hpy99I	CGWCG	4 cut(s)	127, 130, 145, 148
HpyAV	CCTTC	3 cut(s)	80, 94, 166
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	45, 49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 112
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	49, 172
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	101, 183
Lsp1109I	GCAGC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	77, 136
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	101, 112
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	49, 172
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	77, 136
NsiI	ATGCAT	1 cut(s)	47
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	37
PspOMI	GGGCCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	35, 36
PsuI	RGATCY	1 cut(s)	10
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	35, 36
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	2 cut(s)	91, 149
SgeI	CNNG	7 cut(s)	50, 58, 75, 128, 176, 181, 210
SphI	GCATGC	1 cut(s)	49
SsiI	CCGC	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	77, 136
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	2 cut(s)	77, 136
TspDTI	ATGAA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.