Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009148

Physical Location & Seq

Genomic Coordinates Forward (+)

1505204 .. 1509543

Gene Structure 4340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGGAGAGGTCTAGATCGAAGAGATCGTACTACTATGAACAGCAGCAACACCAGGACTATGATACGGAGACCGTCGGCCGGACGAGGCCGAGGTACAACCACCACTACGCCAACGGCAACAACAGCCACCGCCACCGCGGAAGCGGCGGCGGAGGAGGTAGGGCGGCGAAGGCCCAGCAGCAGCAGGAGACGGCGTCGGTGACGGTGACGACGACGTATCGGATACTGTGCCACGATATGAAGGCGGGAGGGGTGATTGGGAAGTCCGGCAGCATTATCAAGTCGATCCGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTGGTTCCCGGAGACGAGGAGCGGATTATCGAGATTTCCGACACGCGGCGGCGGGACCCGGAGGGAAGGATCCCGGCGTTCTCTCCGGCGCAGGAGGCTCTGTTTCTGATCCACGAGCGGATTCTGGAGAGTGAGGTCGGCGGCGCCGATGAGGAGGATGAGTACGGCGGCGGCGGTGGAGGTGGTAGAGGAGGCGGTGGTGGGACACGTGTCGCGACGAGGCTTGTGGTGTCGAGAATGCATGTGGGGAGTTTGCTGGGGAAAGGAGGGAAGATAATAGAGCAAATGAGGATGGAGACAAAGACCCAGATTAGGGTTTTGCCAAGGGATCATAATCTGCCTCGCTGTGTTTCAATGTCTGAGGAGATTGTTCAGGTAGTAGGCGATCCGAATAATGTAAAGTCTGCTGTGGAAATTATTTCATCTCGCTTGAGGGAGAGTCAACACCGTGACCGCAATAATTTCCATGGACGAGCACATTCACCAGAACGGTTCTTTCCTCCTGATGATGATTATATTCCTCATATGAACAATGCAGGACGTAAGTCATCCATGGATGGGGCTGGTTTTGGATCAAGATTATCTGGCCCCAATACGAGGAACAACAACTATGGCTCCCGTTCATCTGGTTATATGATGGAACCAGGGTCTGCTCCAATGGATGATAATGTACAGCCCTTTTACGGAGAAGACCTTGTGTTTCGAATGCTTTGCCCAATTGATAAAGTTGATCTTGTAGTTGGAGAGTCTGATGGAATTATAGAATTGCTTCAAAATGAAATTGGTGTGGATGTCAGGGCTACTGACCGTGTGGCCGGAGCAGATGAACAGATAATCATCATTTCTTCTGAGGAGGGTCCTGATGATGAGCTGTTTCCAGCTCAGGAAGCTATGCTGCACATCCAAACTCGCATTGTCGATCTTATACCAGACAGAGACAACATTATAACTACTAGGTTGCTTGTTTCGTCAAGTGATATTGGATGCTTAGAGGGAAGAGATGGGTCTTTATCAGACATGAGGCGACTTACTGGCGCAAATATACAAATTCTGCCCAGAGAAGAACTTCCTTTGTGTGTATCAGGGAATGATATGCTTTTACAGATAGTAGGGGAAATAAAAGCAGCTCGAGATGCTCTAGTTGAGGTGACATCAAGACTAAGGAGTCACTTATACAGGGAGTTGTTTCAAAAGGATACCATGCCTCTTTCTGCGCCTGGCCCTGCAAGCAGTGCTCTAGATTACATAAATCCTGTTCGTGAAGCTCGTACCGGAAATGGTTCTTCTATAGCTACCTATCAGAATGTGCAAACTGCACAGCCATCAAAGGACTCTGGAGTGGTTGCTAGTGAAGCAGTAAAGCAGAATGAAAGTGAACGGCGTGAAGATGTTCCGACTGGGATGAATAGAATACCTGTGACACTTGTCACTCGGAGTATACTTGAAGTTGTCATACCTGAGAAGGCTGTTTCAAAGCTCATAACAAAATCGAAAAACATGCTTGCTCAAATCAGCGAGCTATCAGGAGCCAGGGTAACCCTGGTAGATGATAGTCCAGAGGTAACCCAAAAGATCATTCAAATTTCAGGTACTCCAGAGCAGACTGAGAGGGCTCAGAGCTTGCTCCAGGGTTTTATTTTAAGCACACAAGAAGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010286 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0031053 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032870 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070878 GO:0070887 GO:0070918 GO:0071229 GO:0071310 GO:0071359 GO:0071395 GO:0071407 GO:0071495 GO:0071704 GO:0080134 GO:0090304 GO:0097159 GO:1900150 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

661

Amino Acids

72.63

Weight (kDa)

5.68

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	72 - 121	1.4e-10	KH domain
KH_1	PF00013	182 - 249	4.1e-12	KH domain
KH_1	PF00013	589 - 651	3.5e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53060 AT5G53060 AT5G53060
fragaria_vesca	FvH4_7g32010 FvH4_7g32010
malus_domestica	MD01G1222900.v1.1 MD07G1293700.v1.1
prunus_persica	Prupe.2G313500_v2.0.a1
pyrus_communis	pycom01g23230 pycom07g26650
rosa_chinensis	RchiOBHm_Chr1g0381621
rosa_laevigata	RLG00000026220
rosa_multiflora	Rmu_sc0003688.1_g000012 Rmu_sc0005891.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278580
rosa_rugosa	Rorug01G0429700
rosa_samantha	Rh1AG453000 Rh1BG410000 Rh1CG424600 Rh1DG441800 Rh2CG399100
rosa_wichuraiana	Rw1G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1271
AasI	GACNNNNNNGTC	1 cut(s)	1488
AccB1I	GGYRCC	1 cut(s)	467
AccBSI	CCGCTC	2 cut(s)	346, 442
AccI	GTMKAC	1 cut(s)	1762
AccII	CGCG	4 cut(s)	138, 305, 370, 539
AclWI	GGATC	8 cut(s)	280, 317, 388, 401, 427, 660, 704, 904
AcoI	YGGCCR	2 cut(s)	76, 1137
AcsI	RAATTY	2 cut(s)	1371, 1905
AcvI	CACGTG	1 cut(s)	533
AcyI	GRCGYC	2 cut(s)	194, 468
AfaI	GTAC	6 cut(s)	29, 95, 488, 996, 1594, 1915
AfiI	CCNNNNNNNGG	8 cut(s)	78, 306, 369, 636, 637, 882, 921, 1007
AflIII	ACRYGT	2 cut(s)	530, 532
AgsI	TTSAA	6 cut(s)	678, 1097, 1514, 1769, 1797, 1904
AjnI	CCWGG	6 cut(s)	51, 967, 1540, 1853, 1863, 1950
AjuI	GAANNNNNNNTTGG	2 cut(s)	1884, 1916
Alw21I	GWGCWC	3 cut(s)	321, 802, 1561
Alw26I	GTCTC	5 cut(s)	62, 182, 330, 614, 1254
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	8 cut(s)	280, 317, 388, 401, 427, 660, 704, 904
AlwNI	CAGNNNCTG	1 cut(s)	974
Ama87I	CYCGRG	1 cut(s)	1452
AoxI	GGCC	6 cut(s)	76, 86, 171, 910, 1137, 1543
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	7 cut(s)	43, 178, 181, 270, 292, 1219, 1448
ApoI	RAATTY	2 cut(s)	1371, 1905
Asp700I	GAANNNNTTC	4 cut(s)	1092, 1389, 1603, 1713
AspLEI	GCGC	5 cut(s)	305, 415, 470, 1361, 1540
AspS9I	GGNCC	5 cut(s)	172, 379, 911, 1181, 1544
AsuC2I	CCSGG	3 cut(s)	333, 383, 398
AsuHPI	GGTGA	5 cut(s)	211, 217, 265, 798, 1483
AsuII	TTCGAA	1 cut(s)	1027
AvaI	CYCGRG	1 cut(s)	1452
AvaII	GGWCC	2 cut(s)	379, 1181
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	1939
BarI	GAAGNNNNNNTAC	4 cut(s)	11, 43, 1761, 1793
BauI	CACGAG	2 cut(s)	320, 437
BbrPI	CACGTG	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	1020
Bbv12I	GWGCWC	3 cut(s)	321, 802, 1561
BbvI	GCAGC	7 cut(s)	55, 190, 193, 282, 304, 1206, 1460
BccI	CCATC	6 cut(s)	610, 875, 955, 1070, 1319, 1654
BceAI	ACGGC	4 cut(s)	130, 207, 505, 1718
BcgI	CGANNNNNNTGC	4 cut(s)	1017, 1051, 1804, 1838
BciT130I	CCWGG	6 cut(s)	53, 969, 1542, 1855, 1865, 1952
BciVI	GTATCC	2 cut(s)	216, 1513
BcnI	CCSGG	3 cut(s)	333, 383, 398
BcoDI	GTCTC	5 cut(s)	62, 182, 330, 614, 1254
BfaI	CTAG	5 cut(s)	12, 1278, 1463, 1562, 1671
BfmI	CTRYAG	1 cut(s)	1611
BfoI	RGCGCY	1 cut(s)	471
BfuI	GTATCC	2 cut(s)	216, 1513
Bme1390I	CCNGG	9 cut(s)	53, 333, 383, 398, 969, 1542, 1855, 1865, 1952
Bme18I	GGWCC	2 cut(s)	379, 1181
BmeT110I	CYCGRG	1 cut(s)	1452
BmgT120I	GGNCC	5 cut(s)	172, 379, 911, 1181, 1544
BmrFI	CCNGG	9 cut(s)	53, 333, 383, 398, 969, 1542, 1855, 1865, 1952
BmrI	ACTGGG	1 cut(s)	1731
BmsI	GCATC	2 cut(s)	1298, 1447
BmuI	ACTGGG	1 cut(s)	1731
BoxI	GACNNNNGTC	3 cut(s)	533, 868, 1748
BpiI	GAAGAC	1 cut(s)	1020
BpmI	CTGGAG	4 cut(s)	470, 1680, 1902, 1934
Bpu10I	CCTNAGC	1 cut(s)	1206
Bpu14I	TTCGAA	1 cut(s)	1027
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	3 cut(s)	333, 383, 398
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	2 cut(s)	657, 1160
BsaHI	GRCGYC	2 cut(s)	194, 468
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	9 cut(s)	89, 136, 647, 790, 876, 968, 1854, 1863, 1951
BsaWI	WCCGGW	1 cut(s)	1595
Bsc4I	CCNNNNNNNGG	8 cut(s)	78, 306, 369, 636, 637, 882, 921, 1007
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	1360, 1726
Bse8I	GATNNNNATC	2 cut(s)	657, 1160
BseBI	CCWGG	6 cut(s)	53, 969, 1542, 1855, 1865, 1952
BseDI	CCNNGG	9 cut(s)	89, 136, 647, 790, 876, 968, 1854, 1863, 1951
BseGI	GGATG	9 cut(s)	487, 621, 872, 886, 991, 1120, 1224, 1313, 1731
BseJI	GATNNNNATC	2 cut(s)	657, 1160
BseLI	CCNNNNNNNGG	8 cut(s)	78, 306, 369, 636, 637, 882, 921, 1007
BseMII	CTCAG	6 cut(s)	675, 1164, 1220, 1773, 1920, 1952
BseNI	ACTGG	2 cut(s)	1360, 1726
BseRI	GAGGAG	6 cut(s)	168, 356, 491, 528, 701, 1190
BseSI	GKGCMC	1 cut(s)	321
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	7 cut(s)	55, 190, 193, 282, 304, 1206, 1460
BseYI	CCCAGC	2 cut(s)	174, 580
BsgI	GTGCAG	2 cut(s)	1205, 1623
Bsh1236I	CGCG	4 cut(s)	138, 305, 370, 539
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	6 cut(s)	78, 88, 173, 912, 1139, 1545
BshNI	GGYRCC	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	3 cut(s)	321, 802, 1561
BsiHKCI	CYCGRG	1 cut(s)	1452
BslFI	GGGAC	2 cut(s)	392, 541
BslI	CCNNNNNNNGG	8 cut(s)	78, 306, 369, 636, 637, 882, 921, 1007
BsmAI	GTCTC	5 cut(s)	62, 182, 330, 614, 1254
BsmBI	CGTCTC	2 cut(s)	182, 330
BsmFI	GGGAC	2 cut(s)	392, 541
BsmI	GAATGC	2 cut(s)	567, 1035
BsnI	GGCC	6 cut(s)	78, 88, 173, 912, 1139, 1545
Bso31I	GGTCTC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	1452
Bsp119I	TTCGAA	1 cut(s)	1027
Bsp1286I	GDGCHC	4 cut(s)	321, 802, 1561, 1939
Bsp1407I	TGTACA	1 cut(s)	994
Bsp19I	CCATGG	2 cut(s)	790, 876
Bsp68I	TCGCGA	1 cut(s)	539
BspANI	GGCC	6 cut(s)	78, 88, 173, 912, 1139, 1545
BspCNI	CTCAG	6 cut(s)	676, 1165, 1219, 1774, 1921, 1951
BspFNI	CGCG	4 cut(s)	138, 305, 370, 539
BspPI	GGATC	8 cut(s)	280, 317, 388, 401, 427, 660, 704, 904
BspT104I	TTCGAA	1 cut(s)	1027
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	62
BsrBI	CCGCTC	2 cut(s)	346, 442
BsrFI	RCCGGY	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	994
BsrI	ACTGG	2 cut(s)	1360, 1726
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	9 cut(s)	89, 136, 647, 790, 876, 968, 1854, 1863, 1951
BssNAI	GTATAC	1 cut(s)	1763
BssNI	GRCGYC	2 cut(s)	194, 468
BssSI	CACGAG	2 cut(s)	320, 437
BssT1I	CCWWGG	3 cut(s)	647, 790, 876
Bst1107I	GTATAC	1 cut(s)	1763
Bst2BI	CACGAG	2 cut(s)	320, 437
Bst2UI	CCWGG	6 cut(s)	53, 969, 1542, 1855, 1865, 1952
Bst4CI	ACNGT	6 cut(s)	73, 205, 228, 773, 816, 1133
Bst6I	CTCTTC	2 cut(s)	14, 1315
BstACI	GRCGYC	2 cut(s)	194, 468
BstAPI	GCANNNNNTGC	1 cut(s)	1556
BstAUI	TGTACA	1 cut(s)	994
BstBAI	YACGTR	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	1027
BstC8I	GCNNGC	4 cut(s)	1552, 1827, 1841, 1946
BstDEI	CTNAG	8 cut(s)	684, 1173, 1206, 1312, 1484, 1782, 1929, 1938
BstDSI	CCRYGG	3 cut(s)	136, 790, 876
BstEII	GGTNACC	2 cut(s)	1858, 1885
BstF5I	GGATG	9 cut(s)	487, 621, 872, 886, 991, 1120, 1224, 1313, 1731
BstFNI	CGCG	4 cut(s)	138, 305, 370, 539
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	5 cut(s)	305, 415, 470, 1361, 1540
BstMAI	GTCTC	5 cut(s)	62, 182, 330, 614, 1254
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	9 cut(s)	123, 144, 170, 419, 1211, 1457, 1551, 1556, 1676
BstNI	CCWGG	6 cut(s)	53, 969, 1542, 1855, 1865, 1952
BstNSI	RCATGY	2 cut(s)	569, 1825
BstPAI	GACNNNNGTC	3 cut(s)	533, 868, 1748
BstPI	GGTNACC	2 cut(s)	1858, 1885
BstSCI	CCNGG	9 cut(s)	51, 331, 381, 396, 967, 1540, 1853, 1863, 1950
BstSFI	CTRYAG	1 cut(s)	1611
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	4 cut(s)	138, 305, 370, 539
BstV1I	GCAGC	7 cut(s)	55, 190, 193, 282, 304, 1206, 1460
BstV2I	GAAGAC	1 cut(s)	1020
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	1763
BstZI	CGGCCG	1 cut(s)	76
BsuI	GTATCC	2 cut(s)	216, 1513
BsuRI	GGCC	6 cut(s)	78, 88, 173, 912, 1139, 1545
BtgI	CCRYGG	3 cut(s)	136, 790, 876
BtsCI	GGATG	9 cut(s)	487, 621, 872, 886, 991, 1120, 1224, 1313, 1731
BtsI	GCAGTG	1 cut(s)	1561
BtsIMutI	CAGTG	1 cut(s)	1561
BtuMI	TCGCGA	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	1552, 1827, 1841, 1946
CaiI	CAGNNNCTG	1 cut(s)	974
CfoI	GCGC	5 cut(s)	305, 415, 470, 1361, 1540
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	5 cut(s)	172, 379, 911, 1181, 1544
Cfr42I	CCGCGG	1 cut(s)	139
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	6 cut(s)	28, 94, 487, 995, 1593, 1914
CviAII	CATG	6 cut(s)	566, 791, 877, 1342, 1525, 1822
CviQI	GTAC	6 cut(s)	28, 94, 487, 995, 1593, 1914
DdeI	CTNAG	8 cut(s)	684, 1173, 1206, 1312, 1484, 1782, 1929, 1938
DinI	GGCGCC	1 cut(s)	469
DrdI	GACNNNNNNGTC	1 cut(s)	1488
DseDI	GACNNNNNNGTC	1 cut(s)	1488
EaeI	YGGCCR	2 cut(s)	76, 1137
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	14, 1315
EarI	CTCTTC	2 cut(s)	14, 1315
EciI	GGCGGA	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	76
Eco130I	CCWWGG	3 cut(s)	647, 790, 876
Eco24I	GRGCYC	1 cut(s)	1939
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	379, 1181
Eco52I	CGGCCG	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	1452
Eco91I	GGTNACC	2 cut(s)	1858, 1885
EcoO109I	RGGNCCY	2 cut(s)	379, 1181
EcoO65I	GGTNACC	2 cut(s)	1858, 1885
EcoRII	CCWGG	6 cut(s)	51, 967, 1540, 1853, 1863, 1950
EcoT14I	CCWWGG	3 cut(s)	647, 790, 876
EcoT22I	ATGCAT	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	1939
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
ErhI	CCWWGG	3 cut(s)	647, 790, 876
Esp3I	CGTCTC	2 cut(s)	182, 330
FaeI	CATG	6 cut(s)	569, 794, 880, 1345, 1528, 1825
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FaqI	GGGAC	2 cut(s)	392, 541
FatI	CATG	6 cut(s)	565, 790, 876, 1341, 1524, 1821
FauI	CCCGC	2 cut(s)	238, 369
FauNDI	CATATG	1 cut(s)	849
FblI	GTMKAC	1 cut(s)	1762
FokI	GGATG	9 cut(s)	494, 628, 859, 893, 998, 1127, 1211, 1320, 1738
FriOI	GRGCYC	1 cut(s)	1939
FspBI	CTAG	5 cut(s)	12, 1278, 1463, 1562, 1671
GlaI	GCGC	5 cut(s)	304, 414, 469, 1360, 1539
GsaI	CCCAGC	2 cut(s)	178, 584
GsuI	CTGGAG	4 cut(s)	470, 1680, 1902, 1934
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	6 cut(s)	78, 88, 173, 912, 1139, 1545
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	5 cut(s)	305, 415, 470, 1361, 1540
Hin1I	GRCGYC	2 cut(s)	194, 468
Hin1II	CATG	6 cut(s)	569, 794, 880, 1345, 1528, 1825
Hin6I	GCGC	5 cut(s)	303, 413, 468, 1359, 1538
HinP1I	GCGC	5 cut(s)	303, 413, 468, 1359, 1538
HincII	GTYRAC	1 cut(s)	767
HindII	GTYRAC	1 cut(s)	767
HinfI	GANTC	5 cut(s)	445, 763, 1070, 1489, 1655
HphI	GGTGA	5 cut(s)	211, 217, 265, 798, 1483
Hpy166II	GTNNAC	4 cut(s)	319, 767, 1700, 1763
Hpy8I	GTNNAC	4 cut(s)	319, 767, 1700, 1763
Hpy99I	CGWCG	5 cut(s)	77, 199, 214, 217, 544
HpyAV	CCTTC	4 cut(s)	163, 235, 384, 1780
HpyCH4III	ACNGT	6 cut(s)	73, 205, 228, 773, 816, 1133
HpyCH4IV	ACGT	4 cut(s)	215, 315, 532, 865
HpyCH4V	TGCA	7 cut(s)	319, 565, 860, 1222, 1550, 1633, 1640
HpyF10VI	GCNNNNNNNGC	9 cut(s)	123, 144, 170, 419, 1211, 1457, 1551, 1556, 1676
HpyF3I	CTNAG	8 cut(s)	684, 1173, 1206, 1312, 1484, 1782, 1929, 1938
HpySE526I	ACGT	4 cut(s)	215, 315, 532, 865
Hsp92I	GRCGYC	2 cut(s)	194, 468
Hsp92II	CATG	6 cut(s)	569, 794, 880, 1345, 1528, 1825
HspAI	GCGC	5 cut(s)	303, 413, 468, 1359, 1538
KasI	GGCGCC	1 cut(s)	467
KflI	GGGWCCC	1 cut(s)	379
KspI	CCGCGG	1 cut(s)	139
LmnI	GCTCC	6 cut(s)	343, 944, 982, 1142, 1850, 1953
Lsp1109I	GCAGC	7 cut(s)	55, 190, 193, 282, 304, 1206, 1460
LweI	GCATC	2 cut(s)	1298, 1447
MaeI	CTAG	5 cut(s)	12, 1278, 1463, 1562, 1671
MaeII	ACGT	4 cut(s)	215, 315, 532, 865
MaeIII	GTNAC	9 cut(s)	199, 205, 773, 1471, 1490, 1741, 1750, 1858, 1885
MbiI	CCGCTC	2 cut(s)	346, 442
MboII	GAAGA	8 cut(s)	31, 607, 1025, 1161, 1332, 1397, 1599, 1721
MfeI	CAATTG	1 cut(s)	1041
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	4 cut(s)	321, 802, 1561, 1939
MluCI	AATT	8 cut(s)	738, 784, 1041, 1080, 1088, 1104, 1371, 1905
Mly113I	GGCGCC	1 cut(s)	468
MlyI	GAGTC	4 cut(s)	772, 1079, 1498, 1649
MmeI	TCCRAC	3 cut(s)	387, 1045, 1742
Mph1103I	ATGCAT	1 cut(s)	567
MroXI	GAANNNNTTC	4 cut(s)	1092, 1389, 1603, 1713
MseI	TTAA	1 cut(s)	1964
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	9 cut(s)	53, 333, 383, 398, 969, 1542, 1855, 1865, 1952
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	2 cut(s)	567, 1035
MvaI	CCWGG	6 cut(s)	53, 969, 1542, 1855, 1865, 1952
MvnI	CGCG	4 cut(s)	138, 305, 370, 539
MwoI	GCNNNNNNNGC	9 cut(s)	123, 144, 170, 419, 1211, 1457, 1551, 1556, 1676
NarI	GGCGCC	1 cut(s)	468
NciI	CCSGG	3 cut(s)	333, 383, 398
NcoI	CCATGG	2 cut(s)	790, 876
NdeI	CATATG	1 cut(s)	849
NlaIII	CATG	6 cut(s)	569, 794, 880, 1345, 1528, 1825
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	7 cut(s)	199, 205, 773, 1471, 1490, 1741, 1750
NruI	TCGCGA	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	2 cut(s)	569, 1825
NspV	TTCGAA	1 cut(s)	1027
PaeR7I	CTCGAG	1 cut(s)	1452
PcsI	WCGNNNNNNNCGW	5 cut(s)	23, 209, 360, 468, 1588
PctI	GAATGC	2 cut(s)	567, 1035
PdmI	GAANNNNTTC	4 cut(s)	1092, 1389, 1603, 1713
PfeI	GAWTC	1 cut(s)	445
PflFI	GACNNNGTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	331
PleI	GAGTC	4 cut(s)	771, 1078, 1497, 1649
PluTI	GGCGCC	1 cut(s)	471
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
PpsI	GAGTC	4 cut(s)	771, 1078, 1497, 1649
Ppu21I	YACGTR	1 cut(s)	533
PpuMI	RGGWCCY	2 cut(s)	379, 1181
PshAI	GACNNNNGTC	3 cut(s)	533, 868, 1748
PsiI	TTATAA	1 cut(s)	1271
Psp5II	RGGWCCY	2 cut(s)	379, 1181
Psp6I	CCWGG	6 cut(s)	51, 967, 1540, 1853, 1863, 1950
PspCI	CACGTG	1 cut(s)	533
PspEI	GGTNACC	2 cut(s)	1858, 1885
PspFI	CCCAGC	2 cut(s)	174, 580
PspGI	CCWGG	6 cut(s)	51, 967, 1540, 1853, 1863, 1950
PspPI	GGNCC	5 cut(s)	172, 379, 911, 1181, 1544
PspPPI	RGGWCCY	2 cut(s)	379, 1181
PstNI	CAGNNNCTG	1 cut(s)	974
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	193
RruI	TCGCGA	1 cut(s)	539
RsaI	GTAC	6 cut(s)	29, 95, 488, 996, 1594, 1915
RsaNI	GTAC	6 cut(s)	28, 94, 487, 995, 1593, 1914
SacII	CCGCGG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	1964
Sau96I	GGNCC	5 cut(s)	172, 379, 911, 1181, 1544
SchI	GAGTC	4 cut(s)	772, 1079, 1498, 1649
ScrFI	CCNGG	9 cut(s)	53, 333, 383, 398, 969, 1542, 1855, 1865, 1952
SduI	GDGCHC	4 cut(s)	321, 802, 1561, 1939
SfaNI	GCATC	2 cut(s)	1298, 1447
SfcI	CTRYAG	1 cut(s)	1611
SfoI	GGCGCC	1 cut(s)	469
Sfr274I	CTCGAG	1 cut(s)	1452
Sfr303I	CCGCGG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	1027
SgrAI	CRCCGGYG	1 cut(s)	299
SgrBI	CCGCGG	1 cut(s)	139
SinI	GGWCC	2 cut(s)	379, 1181
SlaI	CTCGAG	1 cut(s)	1452
SmlI	CTYRAG	2 cut(s)	754, 1452
SmoI	CTYRAG	2 cut(s)	754, 1452
Sse9I	AATT	8 cut(s)	738, 784, 1041, 1080, 1088, 1104, 1371, 1905
SspDI	GGCGCC	1 cut(s)	467
SspMI	CTAG	5 cut(s)	12, 1278, 1463, 1562, 1671
StyD4I	CCNGG	9 cut(s)	51, 331, 381, 396, 967, 1540, 1853, 1863, 1950
StyI	CCWWGG	3 cut(s)	647, 790, 876
TaaI	ACNGT	6 cut(s)	73, 205, 228, 773, 816, 1133
TaiI	ACGT	4 cut(s)	218, 318, 535, 868
TaqI	TCGA	8 cut(s)	17, 284, 354, 557, 1027, 1242, 1453, 1814
TasI	AATT	8 cut(s)	738, 784, 1041, 1080, 1088, 1104, 1371, 1905
TatI	WGTACW	1 cut(s)	994
TauI	GCSGC	8 cut(s)	147, 150, 167, 373, 376, 468, 495, 498
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	1964
Tru9I	TTAA	1 cut(s)	1964
TscAI	CASTG	1 cut(s)	1561
TseFI	GTSAC	7 cut(s)	199, 205, 773, 1471, 1490, 1741, 1750
TseI	GCWGC	7 cut(s)	43, 178, 181, 270, 292, 1219, 1448
Tsp45I	GTSAC	7 cut(s)	199, 205, 773, 1471, 1490, 1741, 1750
TspDTI	ATGAA	9 cut(s)	51, 254, 735, 866, 936, 1116, 1164, 1707, 1742
TspGWI	ACGGA	2 cut(s)	80, 1023
TspRI	CASTG	1 cut(s)	1561
Tth111I	GACNNNGTC	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	379, 1181
XapI	RAATTY	2 cut(s)	1371, 1905
XbaI	TCTAGA	2 cut(s)	11, 1561
XceI	RCATGY	2 cut(s)	569, 1825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1861
XhoI	CTCGAG	1 cut(s)	1452
XmiI	GTMKAC	1 cut(s)	1762
XmnI	GAANNNNTTC	4 cut(s)	1092, 1389, 1603, 1713
XspI	CTAG	5 cut(s)	12, 1278, 1463, 1562, 1671
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.