Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009148

Physical Location & Seq

Genomic Coordinates Reverse (-)

26630594 .. 26631485

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAAATGTATCAGAATGTGCCAACTGGGGGAATAGCACAGCCATCAAAGGATGCTGGAGGGATTGCCAATGAAACAGTAAAGCCACACGAAAGTGAACGGCGTGAAGATGCTCCGAGCTCTTTGAATAGAATGCCTGTGACGCTTGTCACTAGGAGTATACTTGAAGTTGTAATACCAGAGCAGGCAGTTTCAAAGCTCATAACGAAATCGAGAAACAAGCTTGCTCAGATCAGTGAGTTATCAGGAGCTAATGTGACCCTGGTAGAGGATAGACCGGAGGAAACACAAAAGATCATTCGAATTTCAGGTACTCCAGAGCAGGCCGAGAGAGCTCAGAGCTTGCTTCAGGGCTTTATTTTAAGCACACAAGAAGACGGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010286 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0031053 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032870 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070878 GO:0070887 GO:0070918 GO:0071229 GO:0071310 GO:0071359 GO:0071395 GO:0071407 GO:0071495 GO:0071704 GO:0080134 GO:0090304 GO:0097159 GO:1900150 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

129

Amino Acids

13.95

Weight (kDa)

5.48

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53060 AT5G53060 AT5G53060
fragaria_vesca	FvH4_7g32010 FvH4_7g32010
malus_domestica	MD01G1222900.v1.1 MD07G1293700.v1.1
prunus_persica	Prupe.2G313500_v2.0.a1
pyrus_communis	pycom01g23230 pycom07g26650
rosa_chinensis	RchiOBHm_Chr1g0381621
rosa_laevigata	RLG00000026220
rosa_multiflora	Rmu_sc0003688.1_g000012 Rmu_sc0005891.1_g000007
rosa_roxburghii	Rroxscaffold_4G00278580
rosa_rugosa	Rorug01G0429700
rosa_samantha	Rh1AG453000 Rh1BG410000 Rh1CG424600 Rh1DG441800 Rh2CG399100
rosa_wichuraiana	Rw1G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	29, 268
AgsI	TTSAA	3 cut(s)	127, 167, 195
AjnI	CCWGG	1 cut(s)	261
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	6 cut(s)	120, 199, 223, 251, 335, 342
AluI	AGCT	6 cut(s)	120, 199, 223, 251, 335, 342
Alw21I	GWGCWC	2 cut(s)	122, 337
AoxI	GGCC	2 cut(s)	324, 379
ApoI	RAATTY	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	380
AsuII	TTCGAA	1 cut(s)	301
BanII	GRGCYC	2 cut(s)	122, 337
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	2 cut(s)	122, 337
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	43, 100
BmuI	ACTGGG	1 cut(s)	36
BoxI	GACNNNNGTC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	2 cut(s)	78, 300
Bpu14I	TTCGAA	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 268
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	29, 268
BseMII	CTCAG	2 cut(s)	242, 350
BseNI	ACTGG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	326, 381
BsiHKAI	GWGCWC	2 cut(s)	122, 337
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	29, 268
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	326, 381
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	122, 337
Bsp143I	GATC	2 cut(s)	231, 294
BspANI	GGCC	2 cut(s)	326, 381
BspCNI	CTCAG	2 cut(s)	241, 349
BspT104I	TTCGAA	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	231, 294
BssNAI	GTATAC	1 cut(s)	161
Bst1107I	GTATAC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	186, 225, 324, 344
BstDEI	CTNAG	3 cut(s)	228, 336, 384
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	234, 297
BstMBI	GATC	2 cut(s)	231, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 332
BstNI	CCWGG	1 cut(s)	263
BstPAI	GACNNNNGTC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	381
BstZ17I	GTATAC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	326, 381
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	186, 225, 324, 344
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	312
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	3 cut(s)	228, 336, 384
DpnI	GATC	2 cut(s)	233, 296
DpnII	GATC	2 cut(s)	231, 294
Ecl136II	GAGCTC	2 cut(s)	120, 335
Eco24I	GRGCYC	2 cut(s)	122, 337
Eco53kI	GAGCTC	2 cut(s)	120, 335
Eco57I	CTGAAG	1 cut(s)	332
EcoICRI	GAGCTC	2 cut(s)	120, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	2 cut(s)	122, 337
FaiI	YATR	2 cut(s)	161, 203
FblI	GTMKAC	1 cut(s)	160
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	2 cut(s)	122, 337
FspBI	CTAG	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	78, 300
HaeIII	GGCC	2 cut(s)	326, 381
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	221
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	98, 161
Hpy188I	TCNGA	4 cut(s)	15, 117, 231, 339
Hpy188III	TCNNGA	3 cut(s)	213, 246, 317
Hpy8I	GTNNAC	2 cut(s)	98, 161
HpyCH4III	ACNGT	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 332
HpyF3I	CTNAG	3 cut(s)	228, 336, 384
Kzo9I	GATC	2 cut(s)	231, 294
LmnI	GCTCC	2 cut(s)	118, 248
LweI	GCATC	2 cut(s)	43, 100
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	139, 148, 256
MalI	GATC	2 cut(s)	233, 296
MboI	GATC	2 cut(s)	231, 294
MboII	GAAGA	2 cut(s)	119, 386
MhlI	GDGCHC	2 cut(s)	122, 337
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	3 cut(s)	53, 262, 274
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	142, 332
NdeII	GATC	2 cut(s)	231, 294
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	139, 148, 256
NspV	TTCGAA	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	93
PctI	GAATGC	1 cut(s)	138
PshAI	GACNNNNGTC	1 cut(s)	146
Psp124BI	GAGCTC	2 cut(s)	122, 337
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	380
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	2 cut(s)	122, 337
SaqAI	TTAA	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	231, 294
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	122, 337
SetI	ASST	7 cut(s)	122, 201, 225, 253, 313, 337, 344
SfaNI	GCATC	2 cut(s)	43, 100
SfuI	TTCGAA	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	2 cut(s)	122, 337
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	212, 301
TasI	AATT	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	139, 148, 256
Tsp45I	GTSAC	3 cut(s)	139, 148, 256
TspDTI	ATGAA	2 cut(s)	17, 87
TspRI	CASTG	1 cut(s)	241
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.