AT5G53190

Mediates both low-affinity uptake and efflux of sugar across the

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21572143 .. 21574329
2187 bp
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UTR
Exon/CDS
Intron
AT5G53190.1

Sequence Viewer

Length: 792 bp
ATGGGTGATAAACTTCGATTATCCATCGGAATTTTGGGAAACGGAGCTTCTCTGTTGCTATATACAGCTCCAATAGTAACATTTTCAAGGGTGTTTAAGAAGAAAAGCACAGAGGAATTCTCATGTTTTCCTTACGTTATGACACTCTTTAACTGTTTGATATATACTTGGTACGGTTTACCGATTGTGAGTCATCTTTGGGAGAATCTTCCTCTCGTCACCATTAATGGAGTCGGCATCCTTCTCGAATCTATCTTCATTTTCATATATTTCTACTACGCATCACCAAAAGAAAAGATTAAGGTTGGTGTTACATTTGTTCCGGTGATCGTTGGGTTCGGCTTAACGACAGCAATCTCAGCCTTGGTATTTGACGACCATCGTCACCGAAAATCATTCGTCGGAAGTGTTGGCCTCGTGGCTTCCATCTCTATGTATGGTTCTCCTCTCGTCGTTATGAAGAAAGTGATAGAGACAAGAAGTGTGGAATACATGCCGTTTTACTTGTCCTTCTTCTCATTTCTGGCTAGTTCCCTTTGGTTGGCATATGGCTTACTCAGCCATGATCTCTTTCTTGCGTCACCTAATATGGTTGCGACTCCATTGGGAATTCTCCAACTTATCCTCTACTTCAAGTACAAGAATAAGAAGGATTTAGCACCAACAACAATGGTGATCACCAAACGAAATGATCATGATGACAAGAACAAAGCCACACTTGAGTTTGTTGTTGACGTTGATCGTAATAGTGATACCAATGAGAAGAATTCTAACAATGCCTCATCGATCTAA

Protein Analysis

263

Amino Acids

29.54

Weight (kDa)

9.03

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 9 - 97 8.6e-16 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 133 - 217 1.2e-23 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 30, 116, 609, 766
AfaI GTAC 2 cut(s) 173, 638
AfiI CCNNNNNNNGG 1 cut(s) 541
AgsI TTSAA 2 cut(s) 87, 634
AluBI AGCT 2 cut(s) 47, 68
AluI AGCT 2 cut(s) 47, 68
Alw26I GTCTC 1 cut(s) 467
AoxI GGCC 1 cut(s) 412
ApoI RAATTY 4 cut(s) 30, 116, 609, 766
AseI ATTAAT 1 cut(s) 225
AsuHPI GGTGA 8 cut(s) 17, 211, 276, 337, 377, 573, 670, 685
BauI CACGAG 1 cut(s) 416
BccI CCATC 3 cut(s) 32, 387, 434
BceAI ACGGC 1 cut(s) 481
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BclI TGATCA 2 cut(s) 675, 691
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 1 cut(s) 528
BmsI GCATC 2 cut(s) 246, 290
BoxI GACNNNNGTC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpuEI CTTGAG 1 cut(s) 740
Bsa29I ATCGAT 1 cut(s) 785
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 541
BseCI ATCGAT 1 cut(s) 785
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMII CTCAG 2 cut(s) 372, 571
BseRI GAGGAG 1 cut(s) 435
BshFI GGCC 1 cut(s) 414
BshVI ATCGAT 1 cut(s) 785
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 467
BsnI GGCC 1 cut(s) 414
Bsp143I GATC 6 cut(s) 327, 565, 675, 691, 739, 786
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 2 cut(s) 371, 570
BspDI ATCGAT 1 cut(s) 785
BspHI TCATGA 1 cut(s) 694
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 6 cut(s) 327, 565, 675, 691, 739, 786
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 416
Bst4CI ACNGT 2 cut(s) 155, 176
BstDEI CTNAG 2 cut(s) 358, 557
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 6 cut(s) 330, 568, 678, 694, 742, 789
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 6 cut(s) 327, 565, 675, 691, 739, 786
BstMWI GCNNNNNNNGC 2 cut(s) 359, 558
BstNSI RCATGY 1 cut(s) 496
BstPAI GACNNNNGTC 1 cut(s) 381
Bsu15I ATCGAT 1 cut(s) 785
BsuRI GGCC 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 785
BtsCI GGATG 1 cut(s) 237
CciI TCATGA 1 cut(s) 694
ClaI ATCGAT 1 cut(s) 785
CseI GACGC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 172, 637
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 4 cut(s) 123, 493, 563, 695
CviQI GTAC 2 cut(s) 172, 637
DdeI CTNAG 2 cut(s) 358, 557
DpnI GATC 6 cut(s) 329, 567, 677, 693, 741, 788
DpnII GATC 6 cut(s) 327, 565, 675, 691, 739, 786
Eco130I CCWWGG 1 cut(s) 363
EcoRI GAATTC 3 cut(s) 116, 609, 766
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 4 cut(s) 126, 496, 566, 698
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FatI CATG 4 cut(s) 122, 492, 562, 694
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 2 cut(s) 675, 691
FokI GGATG 1 cut(s) 224
FspBI CTAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 567
Hin1II CATG 4 cut(s) 126, 496, 566, 698
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 5 cut(s) 190, 205, 231, 248, 598
HpaII CCGG 1 cut(s) 323
HphI GGTGA 8 cut(s) 17, 211, 276, 337, 377, 573, 670, 685
Hpy166II GTNNAC 2 cut(s) 179, 733
Hpy188I TCNGA 2 cut(s) 29, 404
Hpy188III TCNNGA 2 cut(s) 245, 695
Hpy8I GTNNAC 2 cut(s) 179, 733
Hpy99I CGWCG 2 cut(s) 404, 455
HpyAV CCTTC 3 cut(s) 251, 520, 643
HpyCH4III ACNGT 2 cut(s) 155, 176
HpyCH4IV ACGT 2 cut(s) 135, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 558
HpyF3I CTNAG 2 cut(s) 358, 557
HpySE526I ACGT 2 cut(s) 135, 735
Hsp92II CATG 4 cut(s) 126, 496, 566, 698
Ksp22I TGATCA 2 cut(s) 675, 691
Kzo9I GATC 6 cut(s) 327, 565, 675, 691, 739, 786
LmnI GCTCC 2 cut(s) 44, 73
LpnPI CCDG 2 cut(s) 336, 509
LweI GCATC 2 cut(s) 246, 290
MaeI CTAG 1 cut(s) 528
MaeII ACGT 2 cut(s) 135, 735
MaeIII GTNAC 5 cut(s) 76, 217, 310, 383, 579
MalI GATC 6 cut(s) 329, 567, 677, 693, 741, 788
MboI GATC 6 cut(s) 327, 565, 675, 691, 739, 786
MboII GAAGA 6 cut(s) 112, 200, 247, 472, 505, 775
MluCI AATT 4 cut(s) 30, 116, 609, 766
MlyI GAGTC 3 cut(s) 199, 240, 592
MmeI TCCRAC 2 cut(s) 382, 640
MnlI CCTC 6 cut(s) 106, 222, 425, 456, 635, 790
MseI TTAA 5 cut(s) 96, 150, 225, 300, 344
MslI CAYNNNNRTG 1 cut(s) 431
MspI CCGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 359, 558
NdeI CATATG 1 cut(s) 547
NdeII GATC 6 cut(s) 327, 565, 675, 691, 739, 786
NlaIII CATG 4 cut(s) 126, 496, 566, 698
NmuCI GTSAC 3 cut(s) 217, 383, 579
NspI RCATGY 1 cut(s) 496
PagI TCATGA 1 cut(s) 694
PfeI GAWTC 2 cut(s) 205, 248
PleI GAGTC 3 cut(s) 198, 239, 592
PpsI GAGTC 3 cut(s) 198, 239, 592
PshAI GACNNNNGTC 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 225
RsaI GTAC 2 cut(s) 173, 638
RsaNI GTAC 2 cut(s) 172, 637
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 5 cut(s) 96, 150, 225, 300, 344
Sau3AI GATC 6 cut(s) 327, 565, 675, 691, 739, 786
SchI GAGTC 3 cut(s) 199, 240, 592
SetI ASST 6 cut(s) 49, 70, 138, 306, 586, 738
SfaNI GCATC 2 cut(s) 246, 290
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 4 cut(s) 30, 116, 609, 766
SspMI CTAG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 155, 176
TaiI ACGT 2 cut(s) 138, 738
TaqI TCGA 3 cut(s) 16, 246, 785
TasI AATT 4 cut(s) 30, 116, 609, 766
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 205, 248
Tru1I TTAA 5 cut(s) 96, 150, 225, 300, 344
Tru9I TTAA 5 cut(s) 96, 150, 225, 300, 344
TseFI GTSAC 3 cut(s) 217, 383, 579
Tsp45I GTSAC 3 cut(s) 217, 383, 579
TspDTI ATGAA 3 cut(s) 247, 253, 473
TspGWI ACGGA 1 cut(s) 57
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 4 cut(s) 30, 116, 609, 766
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.