Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014504

Physical Location & Seq

Genomic Coordinates Forward (+)

22498063 .. 22499707

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGAGAGAGGCTGCGATTGGCAACTGGAGTGATGGGAAATGCTGCTTCTTTGTTGCTTTACTCAACTCCCATATTGACTATGTCAAGGATCATAAGGAAGAAAAGTACAGAAGAGTTTTCATGCGTACCTTACATCACTGCACTGCTCAACTGTCTCCTTTATACTTGGTATGGATTGCCTGTTGTAAGCTGCGGCTGGGAAAACTTTCCAGTGGTTACCATCAATGGTCTAGGAATTCTTCTCGAGTTCTCATTCATTCTCATATACTTATGGTTTGCTTCACGTACAAGAAAGATGAAGGTAATTGCAATTCTGATACCACTTATCGTCATGTTCTTCATTACTGTGAGCATCTCAACCTTTGTTTTCCATGATCACCATCATCGAAAGGTATTTGTTGGAAGTATAGGGCTGGTGGCCTCTGTAAGCATGTATGGTTCTCCACTGGTAGTTGTGAAGCAAGTGATTGCAACAAAGAGTGTAGAATTCATGCCATTCTACTTGTCTTTCTTCTCATTCCTCTCTAGTTCACTTTGGATGGCATACGGACTACTGGGACATGATCTCTTTCTTGCGTCGCCTAATCTGGTTGGAAGCCCATTAGGCATATTTCAACTACTGCTCTACTGCAAGTACAGGAAAAGGGCAATGAAAACTATGGGAACACCAAACGAATGGGATCTTGAAGAGAATGATGAAAAGTCTAAACAGAAGCAGATTGTGATTAGTGAAAGTGAAAATGGAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

252

Amino Acids

28.34

Weight (kDa)

9.23

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	2.2e-15	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	6.9e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53190
fragaria_vesca	FvH4_7g31080 FvH4_7g31080 FvH4_7g31080
malus_domestica	MD01G1215700.v1.1
prunus_persica	Prupe.2G307700_v2.0.a1 Prupe.2G307800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380151
rosa_laevigata	RLG00000026326
rosa_roxburghii	Rroxscaffold_4G00279630
rosa_rugosa	Rorug01G0418200 Rorug01G0418300 Rorug01G0418400
rosa_samantha	Rh1AG443200 Rh1BG398100 Rh1DG428900
rosa_wichuraiana	Rw1G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	98, 690
AcsI	RAATTY	2 cut(s)	237, 488
AfaI	GTAC	4 cut(s)	109, 129, 289, 638
AgsI	TTSAA	2 cut(s)	617, 689
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	98, 690
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	13, 44, 192
ApoI	RAATTY	2 cut(s)	237, 488
Asp700I	GAANNNNTTC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	31, 179
BccI	CCATC	4 cut(s)	28, 230, 390, 535
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	233, 528
BglI	GCCNNNNNGGC	1 cut(s)	606
BisI	GCNGC	4 cut(s)	14, 45, 193, 196
BlsI	GCNGC	4 cut(s)	15, 46, 194, 197
BmeT110I	CYCGRG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	381
Bse1I	ACTGG	4 cut(s)	31, 212, 453, 561
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	381
BseGI	GGATG	1 cut(s)	546
BseJI	GATNNNNATC	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	657
BseNI	ACTGG	4 cut(s)	31, 212, 453, 561
BseXI	GCAGC	2 cut(s)	31, 179
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	90, 376, 565, 682
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	98, 690
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	4 cut(s)	31, 212, 453, 561
BssMI	GATC	4 cut(s)	90, 376, 565, 682
Bst4CI	ACNGT	2 cut(s)	155, 349
Bst6I	CTCTTC	2 cut(s)	108, 684
BstBAI	YACGTR	1 cut(s)	287
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	546
BstKTI	GATC	4 cut(s)	93, 379, 568, 685
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	90, 376, 565, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	436
BstPI	GGTNACC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	31, 179
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	2 cut(s)	138, 143
BtsIMutI	CAGTG	4 cut(s)	138, 143, 219, 446
CseI	GACGC	1 cut(s)	567
Csp6I	GTAC	4 cut(s)	108, 128, 288, 637
CviAII	CATG	6 cut(s)	123, 334, 374, 433, 493, 563
CviJI	RGCY	6 cut(s)	13, 192, 198, 415, 422, 600
CviKI_1	RGCY	6 cut(s)	13, 192, 198, 415, 422, 600
CviQI	GTAC	4 cut(s)	108, 128, 288, 637
DpnI	GATC	4 cut(s)	92, 378, 567, 684
DpnII	GATC	4 cut(s)	90, 376, 565, 682
Eam1104I	CTCTTC	2 cut(s)	108, 684
EarI	CTCTTC	2 cut(s)	108, 684
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRI	GAATTC	2 cut(s)	237, 488
FaeI	CATG	6 cut(s)	126, 337, 377, 436, 496, 566
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	6 cut(s)	122, 333, 373, 432, 492, 562
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	4 cut(s)	14, 45, 193, 196
FokI	GGATG	1 cut(s)	553
Fsp4HI	GCNGC	4 cut(s)	14, 45, 193, 196
FspBI	CTAG	2 cut(s)	233, 528
GluI	GCNGC	4 cut(s)	14, 45, 193, 196
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	422
HgaI	GACGC	1 cut(s)	567
Hin1II	CATG	6 cut(s)	126, 337, 377, 436, 496, 566
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	2 cut(s)	245, 686
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	155, 349
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	143, 311, 473, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	6 cut(s)	126, 337, 377, 436, 496, 566
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	90, 376, 565, 682
LpnPI	CCDG	9 cut(s)	12, 184, 195, 225, 401, 434, 542, 575, 625
Lsp1109I	GCAGC	2 cut(s)	31, 179
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	2 cut(s)	233, 528
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	92, 378, 567, 684
MboI	GATC	4 cut(s)	90, 376, 565, 682
MboII	GAAGA	6 cut(s)	112, 125, 233, 331, 505, 701
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	4 cut(s)	237, 306, 312, 488
MmeI	TCCRAC	2 cut(s)	382, 574
MnlI	CCTC	3 cut(s)	3, 433, 533
MroXI	GAANNNNTTC	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	606
NdeII	GATC	4 cut(s)	90, 376, 565, 682
NlaIII	CATG	6 cut(s)	126, 337, 377, 436, 496, 566
NspI	RCATGY	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	15, 46, 194, 197
Ppu21I	YACGTR	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	682
PsyI	GACNNNGTC	1 cut(s)	82
RsaI	GTAC	4 cut(s)	109, 129, 289, 638
RsaNI	GTAC	4 cut(s)	108, 128, 288, 637
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	4 cut(s)	14, 45, 193, 196
Sau3AI	GATC	4 cut(s)	90, 376, 565, 682
SetI	ASST	6 cut(s)	133, 194, 289, 306, 365, 396
SfaNI	GCATC	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	237, 306, 312, 488
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	233, 528
TaaI	ACNGT	2 cut(s)	155, 349
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	246, 388
TasI	AATT	4 cut(s)	237, 306, 312, 488
TatI	WGTACW	2 cut(s)	107, 636
TauI	GCSGC	1 cut(s)	198
TscAI	CASTG	4 cut(s)	145, 150, 219, 453
TseI	GCWGC	3 cut(s)	13, 44, 192
TspDTI	ATGAA	7 cut(s)	111, 247, 314, 331, 481, 668, 714
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	4 cut(s)	145, 150, 219, 453
Tth111I	GACNNNGTC	1 cut(s)	82
XapI	RAATTY	2 cut(s)	237, 488
XceI	RCATGY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	2 cut(s)	233, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.