Rh1BG398100

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
52225760 .. 52230921
5162 bp
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UTR
Exon/CDS
Intron
Rh1BG398100.1

Sequence Viewer

Length: 600 bp
ATGGGAGAGAGGCTGCGATTGGCAACTGGGGTGATGGGAAATGCTGCTTCTTTGTTGCTTTACTCGACTCCCGTATTGACTATGTCAAGGATCACAAGGAAGAAAAGTACAGAGGAGTTTTCATGTGTACCTTACATCACTGCATTGCTCAACTGTCTCCTTTATACTTGGTATGGATTGCCTGTTGTAAGCTGTGGCTGGGAAAACTTTCCAGTGGTTACCATCAATGGTCTAGGAATTCTTCTTGAGTTCTCATTCATTCTCATATACTTCTGGTTTGCTTCACCTACAAGAAAGATGAAGGTAATTGCAATTCTGATACCTGTTATGGTCATGTTCTGCATCACCGTTAGCATCTCAACCTTTGTTTTCCATGACCACCGTCATCGAAAGGAATTTGTTGGAAGTCTAGGGCTGGTGGCCTCTGTAACAATGTATGCTTCTCCACTGGTAGCTGTGAAGCAAGTGATTGTAACAAAGAGTGTAGAATTCATGCCATTCTACTTGTCTTTCTTCTCATTCCTCTCTAGTTCACTTTGGATGGCATACGGACTACTGGGCCATGATCTCTTTCTTGCGGTTTGTATAATATTAATCTAA

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

9.02

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 10 - 95 2.7e-14 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 133 - 195 7.8e-15 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014504)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 578
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 3 cut(s) 237, 395, 488
AfaI GTAC 2 cut(s) 109, 129
AluBI AGCT 2 cut(s) 192, 455
AluI AGCT 2 cut(s) 192, 455
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 420, 559
ApeKI GCWGC 2 cut(s) 13, 44
ApoI RAATTY 3 cut(s) 237, 395, 488
AseI ATTAAT 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 43, 276, 337
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 28, 230, 535
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 3 cut(s) 233, 410, 528
BisI GCNGC 2 cut(s) 14, 45
BlsI GCNGC 2 cut(s) 15, 46
BmgT120I GGNCC 1 cut(s) 559
BmrI ACTGGG 2 cut(s) 36, 566
BmsI GCATC 2 cut(s) 351, 363
BmuI ACTGGG 2 cut(s) 36, 566
BoxI GACNNNNGTC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 266
Bse1I ACTGG 4 cut(s) 31, 212, 453, 561
Bse3DI GCAATG 1 cut(s) 143
BseGI GGATG 1 cut(s) 546
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 4 cut(s) 31, 212, 453, 561
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 2 cut(s) 422, 561
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 422, 561
Bsp143I GATC 2 cut(s) 90, 565
BspACI CCGC 1 cut(s) 578
BspANI GGCC 2 cut(s) 422, 561
BspPI GGATC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 4 cut(s) 31, 212, 453, 561
BssMI GATC 2 cut(s) 90, 565
Bst4CI ACNGT 3 cut(s) 155, 349, 383
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 546
BstKTI GATC 2 cut(s) 93, 568
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 90, 565
BstPAI GACNNNNGTC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 422, 561
BtsCI GGATG 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 219, 446
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 108, 128
CviAII CATG 5 cut(s) 123, 334, 374, 493, 563
CviJI RGCY 7 cut(s) 13, 192, 198, 415, 422, 455, 561
CviKI_1 RGCY 7 cut(s) 13, 192, 198, 415, 422, 455, 561
CviQI GTAC 2 cut(s) 108, 128
DpnI GATC 2 cut(s) 92, 567
DpnII GATC 2 cut(s) 90, 565
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRI GAATTC 2 cut(s) 237, 488
FaeI CATG 5 cut(s) 126, 337, 377, 496, 566
FatI CATG 5 cut(s) 122, 333, 373, 492, 562
Fnu4HI GCNGC 2 cut(s) 14, 45
FokI GGATG 1 cut(s) 553
Fsp4HI GCNGC 2 cut(s) 14, 45
FspBI CTAG 3 cut(s) 233, 410, 528
GluI GCNGC 2 cut(s) 14, 45
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 422, 561
Hin1II CATG 5 cut(s) 126, 337, 377, 496, 566
HinfI GANTC 1 cut(s) 67
HphI GGTGA 3 cut(s) 43, 276, 337
Hpy166II GTNNAC 2 cut(s) 128, 533
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 128, 533
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 155, 349, 383
HpyCH4V TGCA 3 cut(s) 143, 311, 342
Hsp92II CATG 5 cut(s) 126, 337, 377, 496, 566
Kzo9I GATC 2 cut(s) 90, 565
LpnPI CCDG 9 cut(s) 12, 184, 195, 225, 259, 336, 401, 434, 542
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 351, 363
MaeI CTAG 3 cut(s) 233, 410, 528
MaeIII GTNAC 3 cut(s) 217, 427, 472
MalI GATC 2 cut(s) 92, 567
MboI GATC 2 cut(s) 90, 565
MboII GAAGA 3 cut(s) 112, 233, 505
MluCI AATT 5 cut(s) 237, 306, 312, 395, 488
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 4 cut(s) 3, 106, 433, 533
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 593
NdeII GATC 2 cut(s) 90, 565
NlaIII CATG 5 cut(s) 126, 337, 377, 496, 566
PdmI GAANNNNTTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 15, 46
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PshAI GACNNNNGTC 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 593
PspEI GGTNACC 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 82
RsaI GTAC 2 cut(s) 109, 129
RsaNI GTAC 2 cut(s) 108, 128
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 2 cut(s) 14, 45
Sau3AI GATC 2 cut(s) 90, 565
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 1 cut(s) 61
SetI ASST 7 cut(s) 133, 194, 289, 306, 325, 365, 457
SfaNI GCATC 2 cut(s) 351, 363
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 5 cut(s) 237, 306, 312, 395, 488
SsiI CCGC 1 cut(s) 578
SspI AATATT 1 cut(s) 591
SspMI CTAG 3 cut(s) 233, 410, 528
TaaI ACNGT 3 cut(s) 155, 349, 383
TaqI TCGA 2 cut(s) 65, 388
TasI AATT 5 cut(s) 237, 306, 312, 395, 488
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 3 cut(s) 145, 219, 453
TseI GCWGC 2 cut(s) 13, 44
TspDTI ATGAA 4 cut(s) 111, 247, 314, 481
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 3 cut(s) 145, 219, 453
Tth111I GACNNNGTC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 3 cut(s) 237, 395, 488
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 3 cut(s) 233, 410, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.