Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014504

Physical Location & Seq

Genomic Coordinates Forward (+)

30886546 .. 30887685

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1215700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTGCCGCTTTGCTGCTTTTCGCTGCTCCAACGTAATGTCAACTGTGAAAACACTCTTACTTTTATTCTACTACCTAGTTCAAAATTCGTAGCTGATAATACTAAATGTGTTTCCTGCAGATTGACTATGTCGAGAATCGTAAGGAAGAAAAGCACAGAGGGGTTTTCGTGTGTACCTTACGTCACTACGCTGCTCAACTGTCTCCTTTACACTTGGTATGGACTCCCAGTTGTAAGCAACAAGTGGGAAAACGTTCCGCTCTTCACCATTAACGGCACAGGGATTCTTTTCGAGCTCTCATTCATCATCATCTATTTGTGGTTTTCTACAGCACGAGGGAAGGCAATAACTGCGACTGTGATACCTGCTATTGTGGTGTTCTGCATCACCGCCATTATCTCAGCCGTCGTTTTCCATGATCACCAACATCGAAAAGTATTTGTCGGAAGCGTCGCTATAGTGGCCTCTGTGTCAATGTATGCTTCTCCCCTGGTGGTTGTGAAGCAAGTGATACTAACAAAGAACGTCGAATACATGCCATTCTACGTGTCTCTTTTCTCGTTCATCTCAAGCTCCCTCTGGATGGCTTATGGACTACTCAGCCACGACATCTTTGTTGCGTCTCCTAATCTGGTCGGAACCCCATTGAGCATCCTTCAACTAGTTCTGTACTGCAAGTACAGGAAAGGGGGAACAGTGGAGTTACCAAACAAAAGGGATCCTGAAGGGAATAAGGTTAACGACGAAAAGACGATACAGCTGCAGGTTGTGATTTGTGACACAGAAAATGGCAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

268

Amino Acids

29.8

Weight (kDa)

8.97

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	43 - 111	7.4e-10	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	148 - 230	3.5e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53190
fragaria_vesca	FvH4_7g31080 FvH4_7g31080 FvH4_7g31080
malus_domestica	MD01G1215700.v1.1
prunus_persica	Prupe.2G307700_v2.0.a1 Prupe.2G307800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380151
rosa_laevigata	RLG00000026326
rosa_roxburghii	Rroxscaffold_4G00279630
rosa_rugosa	Rorug01G0418200 Rorug01G0418300 Rorug01G0418400
rosa_samantha	Rh1AG443200 Rh1BG398100 Rh1DG428900
rosa_wichuraiana	Rw1G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	376, 757
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	3 cut(s)	8, 260, 393
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	716, 729
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	177, 674, 683
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	84, 662
AhlI	ACTAGT	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	4 cut(s)	95, 298, 576, 763
AluI	AGCT	4 cut(s)	95, 298, 576, 763
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	3 cut(s)	209, 558, 630
AlwI	GGATC	2 cut(s)	716, 729
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	5 cut(s)	4, 15, 25, 193, 763
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	259, 382, 416
BamHI	GGATCC	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	2, 12, 180, 750
BccI	CCATC	1 cut(s)	580
BceAI	ACGGC	2 cut(s)	292, 392
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	209, 558, 630
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	2 cut(s)	78, 665
BfmI	CTRYAG	4 cut(s)	118, 330, 459, 764
BfuAI	ACCTGC	2 cut(s)	376, 757
BisI	GCNGC	6 cut(s)	5, 8, 16, 26, 194, 764
BlsI	GCNGC	6 cut(s)	6, 9, 17, 27, 195, 765
Bme1390I	CCNGG	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	643, 723
BmrFI	CCNGG	1 cut(s)	494
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	396, 663
BmuI	ACTGGG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	556
BsaAI	YACGTR	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	591, 654
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	2 cut(s)	417, 616
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	4 cut(s)	2, 12, 180, 750
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	3 cut(s)	209, 558, 630
BsmBI	CGTCTC	1 cut(s)	630
BsnI	GGCC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	421, 721
BspACI	CCGC	3 cut(s)	8, 260, 393
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	2 cut(s)	416, 615
BspLI	GGNNCC	2 cut(s)	643, 723
BspMAI	CTGCAG	2 cut(s)	122, 768
BspMI	ACCTGC	2 cut(s)	376, 757
BspPI	GGATC	2 cut(s)	716, 729
BspQI	GCTCTTC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	421, 721
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	4 cut(s)	47, 203, 361, 700
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	403, 602
BstF5I	GGATG	2 cut(s)	591, 654
BstKTI	GATC	2 cut(s)	424, 724
BstMAI	GTCTC	3 cut(s)	209, 558, 630
BstMBI	GATC	2 cut(s)	421, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 464
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	4 cut(s)	118, 330, 459, 764
BstV1I	GCAGC	4 cut(s)	2, 12, 180, 750
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	2 cut(s)	591, 654
BtsIMutI	CAGTG	1 cut(s)	705
BveI	ACCTGC	2 cut(s)	376, 757
CseI	GACGC	2 cut(s)	442, 612
Csp6I	GTAC	3 cut(s)	176, 673, 682
CviAII	CATG	2 cut(s)	419, 538
CviJI	RGCY	8 cut(s)	95, 298, 407, 467, 576, 590, 606, 763
CviKI_1	RGCY	8 cut(s)	95, 298, 407, 467, 576, 590, 606, 763
CviQI	GTAC	3 cut(s)	176, 673, 682
DdeI	CTNAG	2 cut(s)	403, 602
DpnI	GATC	2 cut(s)	423, 723
DpnII	GATC	2 cut(s)	421, 721
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	2 cut(s)	422, 541
FaiI	YATR	7 cut(s)	131, 222, 420, 461, 483, 539, 594
FatI	CATG	2 cut(s)	418, 537
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	5, 8, 16, 26, 194, 764
FokI	GGATG	2 cut(s)	598, 641
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	6 cut(s)	5, 8, 16, 26, 194, 764
FspBI	CTAG	2 cut(s)	78, 665
GluI	GCNGC	6 cut(s)	5, 8, 16, 26, 194, 764
HaeIII	GGCC	1 cut(s)	467
HgaI	GACGC	2 cut(s)	442, 612
Hin1II	CATG	2 cut(s)	422, 541
HincII	GTYRAC	2 cut(s)	43, 742
HindII	GTYRAC	2 cut(s)	43, 742
HinfI	GANTC	3 cut(s)	138, 225, 286
HpaI	GTTAAC	1 cut(s)	742
HphI	GGTGA	3 cut(s)	259, 382, 416
Hpy166II	GTNNAC	3 cut(s)	43, 176, 742
Hpy188I	TCNGA	2 cut(s)	449, 641
Hpy188III	TCNNGA	3 cut(s)	135, 583, 725
Hpy8I	GTNNAC	3 cut(s)	43, 176, 742
Hpy99I	CGWCG	4 cut(s)	413, 458, 533, 749
HpyAV	CCTTC	3 cut(s)	337, 668, 722
HpyCH4III	ACNGT	4 cut(s)	47, 203, 361, 700
HpyCH4IV	ACGT	5 cut(s)	34, 183, 255, 528, 549
HpyCH4V	TGCA	4 cut(s)	120, 387, 678, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 464
HpyF3I	CTNAG	2 cut(s)	403, 602
HpySE526I	ACGT	5 cut(s)	34, 183, 255, 528, 549
Hsp92II	CATG	2 cut(s)	422, 541
Ksp22I	TGATCA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	421, 721
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	33, 581
Lsp1109I	GCAGC	4 cut(s)	2, 12, 180, 750
LweI	GCATC	2 cut(s)	396, 663
MaeI	CTAG	2 cut(s)	78, 665
MaeII	ACGT	5 cut(s)	34, 183, 255, 528, 549
MaeIII	GTNAC	3 cut(s)	184, 705, 779
MalI	GATC	2 cut(s)	423, 723
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	2 cut(s)	421, 721
MboII	GAAGA	2 cut(s)	160, 256
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	3 cut(s)	55, 427, 619
MnlI	CCTC	4 cut(s)	154, 332, 478, 590
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	273, 741
MspA1I	CMGCKG	1 cut(s)	763
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	353, 464
NdeII	GATC	2 cut(s)	421, 721
NlaIII	CATG	2 cut(s)	422, 541
NlaIV	GGNNCC	2 cut(s)	643, 723
NmuCI	GTSAC	2 cut(s)	184, 779
NspI	RCATGY	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	138, 286
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	6 cut(s)	6, 9, 17, 27, 195, 765
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Ppu21I	YACGTR	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	643, 723
PsrI	GAACNNNNNNTAC	2 cut(s)	518, 550
PstI	CTGCAG	2 cut(s)	122, 768
PsuI	RGATCY	1 cut(s)	721
PsyI	GACNNNGTC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	763
RsaI	GTAC	3 cut(s)	177, 674, 683
RsaNI	GTAC	3 cut(s)	176, 673, 682
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	273, 741
SatI	GCNGC	6 cut(s)	5, 8, 16, 26, 194, 764
Sau3AI	GATC	2 cut(s)	421, 721
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	396, 663
SfcI	CTRYAG	4 cut(s)	118, 330, 459, 764
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SpeI	ACTAGT	1 cut(s)	664
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	8, 260, 393
SspMI	CTAG	2 cut(s)	78, 665
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	4 cut(s)	47, 203, 361, 700
TaiI	ACGT	5 cut(s)	37, 186, 258, 531, 552
TaqI	TCGA	4 cut(s)	134, 294, 433, 531
TasI	AATT	1 cut(s)	86
TatI	WGTACW	2 cut(s)	672, 681
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	138, 286
Tru1I	TTAA	2 cut(s)	273, 741
Tru9I	TTAA	2 cut(s)	273, 741
TscAI	CASTG	1 cut(s)	705
TseFI	GTSAC	2 cut(s)	184, 779
TseI	GCWGC	5 cut(s)	4, 15, 25, 193, 763
Tsp45I	GTSAC	2 cut(s)	184, 779
TspDTI	ATGAA	2 cut(s)	295, 556
TspRI	CASTG	1 cut(s)	705
Tth111I	GACNNNGTC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	78, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.